=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdHZkxko/inputs/sga_0.10.15-7+b1_ppc64el.buildinfo Source: sga Version: 0.10.15-7 rebuilderd-worker node: osuosl7-ppc64el +------------------------------------------------------------------------------+ | Downloading sources Thu, 27 Nov 2025 03:15:43 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.5 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [148 kB] Get:7 https://deb.debian.org/debian sid InRelease [176 kB] Get:8 https://deb.debian.org/debian experimental InRelease [82.8 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,548 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [94.2 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [35.8 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [104 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [1,032 B] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7,408 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:19 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [9,388 B] Get:21 https://deb.debian.org/debian experimental/main Sources [371 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [3,332 B] Fetched 33.8 MB in 5s (7,267 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/s/sga/sga_0.10.15-7.dsc' sga_0.10.15-7.dsc 2084 SHA256:b3ec2546141c8a35c7726788237794b3de9ceb57a89f5b58fe94713ddf63afbd 'https://deb.debian.org/debian/pool/main/s/sga/sga_0.10.15.orig.tar.gz' sga_0.10.15.orig.tar.gz 6569986 SHA256:1b18996e6ec47985bc4889a8cbc3cd4dd3a8c7d385ae9f450bd474e36342558b 'https://deb.debian.org/debian/pool/main/s/sga/sga_0.10.15-7.debian.tar.xz' sga_0.10.15-7.debian.tar.xz 214356 SHA256:708c923249099329004802eb6fe1b549b6421e5d3cf10d81c624db65e381117f 1b18996e6ec47985bc4889a8cbc3cd4dd3a8c7d385ae9f450bd474e36342558b sga_0.10.15.orig.tar.gz 708c923249099329004802eb6fe1b549b6421e5d3cf10d81c624db65e381117f sga_0.10.15-7.debian.tar.xz b3ec2546141c8a35c7726788237794b3de9ceb57a89f5b58fe94713ddf63afbd sga_0.10.15-7.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Thu, 27 Nov 2025 03:15:48 +0000 | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdHZkxko/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdHZkxko/inputs/sga_0.10.15-7+b1_ppc64el.buildinfo Rebuilding sga=0.10.15-7 in /srv/rebuilderd/tmp/rebuilderdHZkxko/inputs now. /srv/rebuilderd/tmp/rebuilderdHZkxko/inputs/sga_0.10.15-7+b1_ppc64el.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/sga-trb58E/sga-0.10.15 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [176 kB] Get:2 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm InRelease [157 kB] Get:3 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm InRelease [161 kB] Get:4 http://deb.debian.org/debian unstable/main ppc64el Packages [10.1 MB] Get:5 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el Packages [8321 kB] Get:6 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el Packages [8344 kB] Fetched 27.2 MB in 11s (2568 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20220903T155935Z/dists/bookworm/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20220921T235202Z/dists/bookworm/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libx11-6 ppc64el 2:1.8.1-2 [811 kB] Fetched 811 kB in 0s (59.1 MB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.1-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpkk8r7s2f/libx11-6_1.8.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.10 [731 kB] Fetched 731 kB in 0s (56.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphai4ke1v/libdb5.3_5.3.28+dfsg1-0.10_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libldap-2.5-0 ppc64el 2.5.12+dfsg-2+b1 [244 kB] Fetched 244 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0uus9sm2/libldap-2.5-0_2.5.12+dfsg-2+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el dash ppc64el 0.5.11+git20210903+057cd650a4ed-8 [121 kB] Fetched 121 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoku2rjiq/dash_0.5.11+git20210903+057cd650a4ed-8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg-7 [40.9 kB] Fetched 40.9 kB in 1s (32.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzu6cy5fx/libsasl2-modules-db_2.1.28+dfsg-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxau6 ppc64el 1:1.0.9-1 [20.3 kB] Fetched 20.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libxau6_1%3a1.0.9-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpwvet668u/libxau6_1.0.9-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el base-files ppc64el 12.2 [70.1 kB] Fetched 70.1 kB in 0s (6804 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3v1hq5y/base-files_12.2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (1708 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph1_89q87/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el fontconfig ppc64el 2.13.1-4.4 [419 kB] Fetched 419 kB in 0s (35.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdg0zy1uq/fontconfig_2.13.1-4.4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libc-dev-bin ppc64el 2.34-7 [248 kB] Fetched 248 kB in 2s (133 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_pazrtj_/libc-dev-bin_2.34-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxcb-shm0 ppc64el 1.15-1 [106 kB] Fetched 106 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz14fdytt/libxcb-shm0_1.15-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el perl-modules-5.34 all 5.34.0-5 [2850 kB] Fetched 2850 kB in 0s (111 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfevblqe5/perl-modules-5.34_5.34.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libmagic1 ppc64el 1:5.41-4 [137 kB] Fetched 137 kB in 0s (0 B/s) dpkg-name: info: moved 'libmagic1_1%3a5.41-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmplfq8v_qp/libmagic1_5.41-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpsl5 ppc64el 0.21.0-1.2 [59.3 kB] Fetched 59.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubx6hytq/libpsl5_0.21.0-1.2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpathplan4 ppc64el 2.42.2-7 [66.9 kB] Fetched 66.9 kB in 2s (40.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyn3xqmo9/libpathplan4_2.42.2-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el systemd ppc64el 251.4-3 [2906 kB] Fetched 2906 kB in 2s (1265 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzldcpzxu/systemd_251.4-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el fonts-dejavu-core all 2.37-2 [1069 kB] Fetched 1069 kB in 0s (67.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi72h13fz/fonts-dejavu-core_2.37-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libbz2-1.0 ppc64el 1.0.8-5 [50.4 kB] Fetched 50.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpegkrih3w/libbz2-1.0_1.0.8-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libltdl7 ppc64el 2.4.7-4 [406 kB] Fetched 406 kB in 0s (27.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxuuey0v/libltdl7_2.4.7-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el graphviz ppc64el 2.42.2-7 [664 kB] Fetched 664 kB in 2s (345 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiilahxs5/graphviz_2.42.2-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcap2 ppc64el 1:2.44-1 [25.3 kB] Fetched 25.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libcap2_1%3a2.44-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpbu1b69a3/libcap2_2.44-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el gettext-base ppc64el 0.21-9 [177 kB] Fetched 177 kB in 0s (15.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5j8am8vf/gettext-base_0.21-9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el file ppc64el 1:5.41-4 [67.6 kB] Fetched 67.6 kB in 0s (6688 kB/s) dpkg-name: info: moved 'file_1%3a5.41-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpqbd0f1bs/file_5.41-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libc6 ppc64el 2.34-7 [2878 kB] Fetched 2878 kB in 2s (1260 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4r5fdaa2/libc6_2.34-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgvc6 ppc64el 2.42.2-7 [752 kB] Fetched 752 kB in 2s (345 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps3g5vfvh/libgvc6_2.42.2-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgvpr2 ppc64el 2.42.2-7 [219 kB] Fetched 219 kB in 2s (119 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd9k4uom8/libgvpr2_2.42.2-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxdmcp6 ppc64el 1:1.1.2-3 [26.2 kB] Fetched 26.2 kB in 0s (0 B/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.2-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpl3edtr8r/libxdmcp6_1.1.2-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el lsb-base all 11.2 [29.1 kB] Fetched 29.1 kB in 0s (1647 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpig1yse62/lsb-base_11.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libasan8 ppc64el 12.2.0-1 [2185 kB] Fetched 2185 kB in 2s (949 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpudu5pr6p/libasan8_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el util-linux-extra ppc64el 2.38.1-1 [177 kB] Fetched 177 kB in 0s (13.4 MB/s) Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el libglib2.0-0 ppc64el 2.73.3-3 [1516 kB] Fetched 1516 kB in 0s (76.0 MB/s) Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libubsan1 ppc64el 12.2.0-1 [897 kB] dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwv6hn8a4/util-linux-extra_2.38.1-1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0rk3zo1b/libglib2.0-0_2.73.3-3_ppc64el.deb' Fetched 897 kB in 2s (402 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9d57xh5y/libubsan1_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el mawk ppc64el 1.3.4.20200120-3.1 [123 kB] Fetched 123 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsliihlhn/mawk_1.3.4.20200120-3.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el x11-common all 1:7.7+23 [252 kB] Fetched 252 kB in 0s (24.2 MB/s) dpkg-name: info: moved 'x11-common_1%3a7.7+23_all.deb' to '/srv/rebuilderd/tmp/tmpjjw2334w/x11-common_7.7+23_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libnsl-dev ppc64el 1.3.0-2 [73.6 kB] Fetched 73.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx02636z2/libnsl-dev_1.3.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-4.1 [197 kB] Fetched 197 kB in 0s (18.3 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.2.11.dfsg-4.1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpt2lql5s4/zlib1g-dev_1.2.11.dfsg-4.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el init-system-helpers all 1.64 [49.2 kB] Fetched 49.2 kB in 0s (4467 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9b231ajo/init-system-helpers_1.64_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libitm1 ppc64el 12.2.0-1 [28.9 kB] Fetched 28.9 kB in 2s (19.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4y0ekeco/libitm1_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libseccomp2 ppc64el 2.5.4-1+b1 [55.3 kB] Fetched 55.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmf6y7kdy/libseccomp2_2.5.4-1+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxaw7 ppc64el 2:1.0.14-1 [214 kB] Fetched 214 kB in 0s (0 B/s) dpkg-name: info: moved 'libxaw7_2%3a1.0.14-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmprce7wapq/libxaw7_1.0.14-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libatomic1 ppc64el 12.2.0-1 [9768 B] Fetched 9768 B in 1s (9611 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp36qvc8uy/libatomic1_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libhogweed6 ppc64el 3.8.1-2 [331 kB] Fetched 331 kB in 0s (32.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe3sthe94/libhogweed6_3.8.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el intltool-debian all 0.35.0+20060710.5 [26.8 kB] Fetched 26.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp40n1m6mw/intltool-debian_0.35.0+20060710.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libncursesw6 ppc64el 6.3+20220423-2 [150 kB] Fetched 150 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5aziqy1r/libncursesw6_6.3+20220423-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libfreetype6 ppc64el 2.12.1+dfsg-3 [460 kB] Fetched 460 kB in 0s (41.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz1ez0gif/libfreetype6_2.12.1+dfsg-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpython3.10-stdlib ppc64el 3.10.6-1 [1689 kB] Fetched 1689 kB in 2s (792 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1g6ojlo9/libpython3.10-stdlib_3.10.6-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxcb-render0 ppc64el 1.15-1 [116 kB] Fetched 116 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpozybogfp/libxcb-render0_1.15-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libc-bin ppc64el 2.34-7 [934 kB] Fetched 934 kB in 2s (555 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplob9vhgc/libc-bin_2.34-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el python3.10 ppc64el 3.10.6-1 [545 kB] Fetched 545 kB in 2s (290 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmdk_7c99/python3.10_3.10.6-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpcre2-8-0 ppc64el 10.40-1 [247 kB] Fetched 247 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq4j_dxx0/libpcre2-8-0_10.40-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libp11-kit0 ppc64el 0.24.1-1 [351 kB] Fetched 351 kB in 0s (30.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmproab3b2h/libp11-kit0_0.24.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el debianutils ppc64el 5.7-0.3 [103 kB] Fetched 103 kB in 0s (10.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppwmcnbos/debianutils_5.7-0.3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el groff-base ppc64el 1.22.4-8 [944 kB] Fetched 944 kB in 0s (66.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfuyc4n49/groff-base_1.22.4-8_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.38.90.20220713-2 [2094 kB] Fetched 2094 kB in 0s (100 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprnd8p5t_/binutils-powerpc64le-linux-gnu_2.38.90.20220713-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el binutils ppc64el 2.38.90.20220713-2 [63.6 kB] Fetched 63.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvxeiutov/binutils_2.38.90.20220713-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el dwz ppc64el 0.14-1 [103 kB] Fetched 103 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9yjab5h4/dwz_0.14-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el liblsan0 ppc64el 12.2.0-1 [980 kB] Fetched 980 kB in 2s (482 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp27dogmlz/liblsan0_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgdbm6 ppc64el 1.23-1+b1 [87.8 kB] Fetched 87.8 kB in 2s (57.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa4bsh0bg/libgdbm6_1.23-1+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libudev1 ppc64el 251.4-3 [190 kB] Fetched 190 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68i5hgrm/libudev1_251.4-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el debhelper all 13.9.1 [1071 kB] Fetched 1071 kB in 0s (73.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1nvqqnm3/debhelper_13.9.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libncurses6 ppc64el 6.3+20220423-2 [117 kB] Fetched 117 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpghl8y13t/libncurses6_6.3+20220423-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el linux-libc-dev ppc64el 5.18.16-1 [1609 kB] Fetched 1609 kB in 3s (643 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp87jarl8c/linux-libc-dev_5.18.16-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libfontconfig1 ppc64el 2.13.1-4.4 [369 kB] Fetched 369 kB in 0s (29.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp59jkqr9d/libfontconfig1_2.13.1-4.4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpython3.10-minimal ppc64el 3.10.6-1 [826 kB] Fetched 826 kB in 2s (421 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmporgyap7h/libpython3.10-minimal_3.10.6-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libssl3 ppc64el 3.0.5-2 [2043 kB] Fetched 2043 kB in 0s (106 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89hs1rcs/libssl3_3.0.5-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el findutils ppc64el 4.9.0-3 [700 kB] Fetched 700 kB in 0s (66.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgwkyudfb/findutils_4.9.0-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el dh-python all 5.20220819 [114 kB] Fetched 114 kB in 1s (101 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9_9e1c8q/dh-python_5.20220819_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpam-modules-bin ppc64el 1.5.2-2 [117 kB] Fetched 117 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5e22zqa0/libpam-modules-bin_1.5.2-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpchi4ma__/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgmp10 ppc64el 2:6.2.1+dfsg1-1 [575 kB] Fetched 575 kB in 0s (50.4 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.2.1+dfsg1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpuos7cyvy/libgmp10_6.2.1+dfsg1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpipeline1 ppc64el 1.5.6-2 [41.4 kB] Fetched 41.4 kB in 1s (31.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5wr2wum/libpipeline1_1.5.6-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpng16-16 ppc64el 1.6.37-5 [305 kB] Fetched 305 kB in 0s (28.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptctor_96/libpng16-16_1.6.37-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libjson-c5 ppc64el 0.16-1 [47.8 kB] Fetched 47.8 kB in 1s (33.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfq4lbet_/libjson-c5_0.16-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libelf1 ppc64el 0.187-1 [190 kB] Fetched 190 kB in 0s (18.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa2qt0pue/libelf1_0.187-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libmpfr6 ppc64el 4.1.0-3 [916 kB] Fetched 916 kB in 0s (50.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5v8hsanc/libmpfr6_4.1.0-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el python3-minimal ppc64el 3.10.6-1 [38.7 kB] Fetched 38.7 kB in 1s (30.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp18t4l8ry/python3-minimal_3.10.6-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el hostname ppc64el 3.23 [15.6 kB] Fetched 15.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9cvzyon5/hostname_3.23_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libthai-data all 0.1.29-1 [176 kB] Fetched 176 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4o296n0/libthai-data_0.1.29-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libjpeg62-turbo ppc64el 1:2.1.2-1 [170 kB] Fetched 170 kB in 0s (0 B/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.2-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp_fcmj61j/libjpeg62-turbo_2.1.2-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (5020 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpozqw6ejj/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgraphite2-3 ppc64el 1.3.14-1 [86.8 kB] Fetched 86.8 kB in 0s (8293 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq2fawx1e/libgraphite2-3_1.3.14-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el diffutils ppc64el 1:3.8-1 [401 kB] Fetched 401 kB in 0s (37.9 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.8-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpp1igng09/diffutils_3.8-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libargon2-1 ppc64el 0~20171227-0.3 [22.9 kB] Fetched 22.9 kB in 1s (17.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmkmchkz1/libargon2-1_0~20171227-0.3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgd3 ppc64el 2.3.3-6 [149 kB] Fetched 149 kB in 2s (91.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj8n7rxa1/libgd3_2.3.3-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcairo2 ppc64el 1.16.0-6 [631 kB] Fetched 631 kB in 0s (47.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3vp6l0si/libcairo2_1.16.0-6_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libperl5.34 ppc64el 5.34.0-5 [4161 kB] Fetched 4161 kB in 0s (99.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcxldibwo/libperl5.34_5.34.0-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el cpp ppc64el 4:12.2.0-1 [20.0 kB] Fetched 20.0 kB in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a12.2.0-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp4odu3gaa/cpp_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxcb1 ppc64el 1.15-1 [148 kB] Fetched 148 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9h5rtt4q/libxcb1_1.15-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libdatrie1 ppc64el 0.2.13-2 [45.4 kB] Fetched 45.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp19d50dh1/libdatrie1_0.2.13-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgpg-error0 ppc64el 1.45-2 [91.7 kB] Fetched 91.7 kB in 0s (8935 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjrzgknnw/libgpg-error0_1.45-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libsm6 ppc64el 2:1.2.3-1 [36.0 kB] Fetched 36.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libsm6_2%3a1.2.3-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpnp6zahrt/libsm6_1.2.3-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxmu6 ppc64el 2:1.1.3-3 [65.7 kB] Fetched 65.7 kB in 0s (6479 kB/s) dpkg-name: info: moved 'libxmu6_2%3a1.1.3-3_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp0wy72y72/libxmu6_1.1.3-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcrypt-dev ppc64el 1:4.4.28-2 [131 kB] Fetched 131 kB in 0s (12.6 MB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.28-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp8__7yh_9/libcrypt-dev_4.4.28-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libjbig0 ppc64el 2.1-3.1+b2 [30.4 kB] Fetched 30.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwrv6omne/libjbig0_2.1-3.1+b2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcom-err2 ppc64el 1.46.5-2 [76.2 kB] Fetched 76.2 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpveuobn9o/libcom-err2_1.46.5-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libnettle8 ppc64el 3.8.1-2 [309 kB] Fetched 309 kB in 0s (24.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp068f_py8/libnettle8_3.8.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el debconf all 1.5.79 [143 kB] Fetched 143 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9cggqjdd/debconf_1.5.79_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el sysvinit-utils ppc64el 3.04-1 [29.1 kB] Fetched 29.1 kB in 1s (31.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp34mjiwun/sysvinit-utils_3.04-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el xz-utils ppc64el 5.2.5-2.1 [223 kB] Fetched 223 kB in 0s (19.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2z6g9u4o/xz-utils_5.2.5-2.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el dmsetup ppc64el 2:1.02.185-1 [86.7 kB] Fetched 86.7 kB in 1s (58.1 kB/s) dpkg-name: info: moved 'dmsetup_2%3a1.02.185-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpz07sstg0/dmsetup_1.02.185-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libdpkg-perl all 1.21.9 [1621 kB] Fetched 1621 kB in 0s (92.7 MB/s) Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libhts3 ppc64el 1.13+ds-2+b1 [433 kB] Fetched 433 kB in 2s (221 kB/s) Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el cpp-12 ppc64el 12.2.0-1 [8842 kB] Fetched 8842 kB in 3s (3373 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjt62x4sk/libdpkg-perl_1.21.9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpusqg4sbw/libhts3_1.13+ds-2+b1_ppc64el.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphp0a6hq_/cpp-12_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libkmod2 ppc64el 30+20220630-3 [65.9 kB] Fetched 65.9 kB in 2s (41.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa_oaixur/libkmod2_30+20220630-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libtasn1-6 ppc64el 4.18.0-4 [61.0 kB] Fetched 61.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64d8sbjt/libtasn1-6_4.18.0-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libfdisk1 ppc64el 2.38.1-1 [266 kB] Fetched 266 kB in 1s (191 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp51172ldv/libfdisk1_2.38.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libtool all 2.4.7-4 [526 kB] Fetched 526 kB in 0s (36.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57ucu8re/libtool_2.4.7-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcryptsetup12 ppc64el 2:2.5.0-2 [290 kB] Fetched 290 kB in 2s (187 kB/s) dpkg-name: info: moved 'libcryptsetup12_2%3a2.5.0-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpxoi5b9rt/libcryptsetup12_2.5.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libdebhelper-perl all 13.9.1 [196 kB] Fetched 196 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0voqfqsz/libdebhelper-perl_13.9.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpixman-1-0 ppc64el 0.40.0-1 [492 kB] Fetched 492 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwmf67vaa/libpixman-1-0_0.40.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el binutils-common ppc64el 2.38.90.20220713-2 [2313 kB] Fetched 2313 kB in 0s (103 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpffshu1zw/binutils-common_2.38.90.20220713-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el gettext ppc64el 0.21-9 [1339 kB] Fetched 1339 kB in 0s (79.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_qm0mk65/gettext_0.21-9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libkrb5support0 ppc64el 1.20-1 [69.6 kB] Fetched 69.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp455o2h5f/libkrb5support0_1.20-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libicu71 ppc64el 71.1-3 [9340 kB] Fetched 9340 kB in 0s (152 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmhrmt9kq/libicu71_71.1-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el autopoint all 0.21-9 [510 kB] Fetched 510 kB in 0s (44.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpahgn7ekm/autopoint_0.21-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el mount ppc64el 2.38.1-1 [200 kB] Fetched 200 kB in 2s (120 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgx98s6ej/mount_2.38.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el python3.10-minimal ppc64el 3.10.6-1 [1980 kB] Fetched 1980 kB in 2s (843 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7kyd22an/python3.10-minimal_3.10.6-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libisl23 ppc64el 0.25-1 [759 kB] Fetched 759 kB in 0s (55.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6iisgzz1/libisl23_0.25-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpangocairo-1.0-0 ppc64el 1.50.9+ds-1 [64.1 kB] Fetched 64.1 kB in 1s (54.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwb5u1s70/libpangocairo-1.0-0_1.50.9+ds-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libuuid1 ppc64el 2.38.1-1 [87.4 kB] Fetched 87.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphy5jmilo/libuuid1_2.38.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el bsdextrautils ppc64el 2.38.1-1 [152 kB] Fetched 152 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy2ok0vup/bsdextrautils_2.38.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libharfbuzz0b ppc64el 2.7.4-1+b1 [1495 kB] Fetched 1495 kB in 0s (96.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppqkli3y6/libharfbuzz0b_2.7.4-1+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libdeflate0 ppc64el 1.12-1 [50.9 kB] Fetched 50.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvymtrvzn/libdeflate0_1.12-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libtirpc-common all 1.3.3+ds-1 [14.0 kB] Fetched 14.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvwuu57my/libtirpc-common_1.3.3+ds-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libselinux1 ppc64el 3.4-1+b1 [103 kB] Fetched 103 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf08lx7v0/libselinux1_3.4-1+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxt6 ppc64el 1:1.2.1-1 [200 kB] Fetched 200 kB in 0s (18.6 MB/s) dpkg-name: info: moved 'libxt6_1%3a1.2.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpfitokq8g/libxt6_1.2.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libreadline8 ppc64el 8.2~rc2-2 [183 kB] Fetched 183 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptfoinz1v/libreadline8_8.2~rc2-2_ppc64el.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el libsparsehash-dev all 2.0.3-2 [76.8 kB] Fetched 76.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl543v2ul/libsparsehash-dev_2.0.3-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el rpcsvc-proto ppc64el 1.4.2-4 [65.1 kB] Fetched 65.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfshc7sgl/rpcsvc-proto_1.4.2-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el perl-base ppc64el 5.34.0-5 [1642 kB] Fetched 1642 kB in 0s (84.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu44i4v9w/perl-base_5.34.0-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el libbamtools2.5.2 ppc64el 2.5.2+dfsg-2 [161 kB] Fetched 161 kB in 1s (160 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfgfehhse/libbamtools2.5.2_2.5.2+dfsg-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el gcc-12-base ppc64el 12.2.0-1 [208 kB] Fetched 208 kB in 2s (128 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp_2amnjp/gcc-12-base_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libmd0 ppc64el 1.0.4-2 [30.8 kB] Fetched 30.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxhvt1lh0/libmd0_1.0.4-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el python3-distutils all 3.10.6-1 [141 kB] Fetched 141 kB in 2s (83.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvh0to4qk/python3-distutils_3.10.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgdbm-compat4 ppc64el 1.23-1+b1 [59.2 kB] Fetched 59.2 kB in 1s (43.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpufcj6lbg/libgdbm-compat4_1.23-1+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libmount1 ppc64el 2.38.1-1 [244 kB] Fetched 244 kB in 0s (21.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp14wjnldu/libmount1_2.38.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpam0g ppc64el 1.5.2-2 [135 kB] Fetched 135 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgbfok77d/libpam0g_1.5.2-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg-7 [87.4 kB] Fetched 87.4 kB in 1s (61.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm_h_khkv/libsasl2-2_2.1.28+dfsg-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el bash ppc64el 5.2~rc2-2 [1559 kB] Fetched 1559 kB in 0s (83.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0xya3zcf/bash_5.2~rc2-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Fetched 15.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv2jurn1z/dh-strip-nondeterminism_1.13.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el gcc-12 ppc64el 12.2.0-1 [17.2 MB] Fetched 17.2 MB in 2s (7153 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy93o3_3t/gcc-12_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libffi8 ppc64el 3.4.2-4 [26.9 kB] Fetched 26.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpry8b64d4/libffi8_3.4.2-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [35.3 kB] Fetched 35.3 kB in 0s (0 B/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.10-1.1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpk6nnhrhh/libxrender1_0.9.10-1.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libsub-override-perl all 0.09-3 [10.4 kB] Fetched 10.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1pt2kxw7/libsub-override-perl_0.09-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libmpc3 ppc64el 1.2.1-2 [48.4 kB] Fetched 48.4 kB in 0s (4799 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsiu91r2k/libmpc3_1.2.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxext6 ppc64el 2:1.3.4-1 [54.6 kB] Fetched 54.6 kB in 0s (0 B/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp4v_osbl5/libxext6_1.3.4-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpcre3 ppc64el 2:8.39-14 [341 kB] Fetched 341 kB in 0s (0 B/s) dpkg-name: info: moved 'libpcre3_2%3a8.39-14_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpyxb4rdw2/libpcre3_8.39-14_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libkrb5-3 ppc64el 1.20-1 [398 kB] Fetched 398 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdh8c7u9w/libkrb5-3_1.20-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libdebconfclient0 ppc64el 0.264 [51.0 kB] Fetched 51.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc3pl4d10/libdebconfclient0_0.264_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el g++ ppc64el 4:12.2.0-1 [1632 B] Fetched 1632 B in 0s (0 B/s) dpkg-name: info: moved 'g++_4%3a12.2.0-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpssx5cqfl/g++_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgnutls30 ppc64el 3.7.7-2 [1381 kB] Fetched 1381 kB in 0s (74.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4onbfyg2/libgnutls30_3.7.7-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el ucf all 3.0043 [74.0 kB] Fetched 74.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj_twipxu/ucf_3.0043_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el liblerc4 ppc64el 4.0.0+ds-1 [182 kB] Fetched 182 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnq9skno1/liblerc4_4.0.0+ds-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el gcc ppc64el 4:12.2.0-1 [5212 B] Fetched 5212 B in 0s (0 B/s) dpkg-name: info: moved 'gcc_4%3a12.2.0-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp3vwjs1c9/gcc_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el sed ppc64el 4.8-1 [321 kB] Fetched 321 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk8nb9osi/sed_4.8-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el base-passwd ppc64el 3.6.0 [61.0 kB] Fetched 61.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx0s8zrx5/base-passwd_3.6.0_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpam-modules ppc64el 1.5.2-2 [358 kB] Fetched 358 kB in 0s (30.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw8tnfch2/libpam-modules_1.5.2-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libwebp7 ppc64el 1.2.2-2+b1 [260 kB] Fetched 260 kB in 0s (23.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg8ppdzg4/libwebp7_1.2.2-2+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libacl1 ppc64el 2.3.1-1 [32.8 kB] Fetched 32.8 kB in 0s (3227 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuofwnt_q/libacl1_2.3.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el dpkg ppc64el 1.21.9 [2578 kB] Fetched 2578 kB in 0s (92.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph7crqvr0/dpkg_1.21.9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el tar ppc64el 1.34+dfsg-1 [867 kB] Fetched 867 kB in 0s (60.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmparzhnenr/tar_1.34+dfsg-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcdt5 ppc64el 2.42.2-7 [65.3 kB] Fetched 65.3 kB in 1s (44.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpghac5mfu/libcdt5_2.42.2-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpango-1.0-0 ppc64el 1.50.9+ds-1 [252 kB] Fetched 252 kB in 2s (143 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyyejmv54/libpango-1.0-0_1.50.9+ds-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libsystemd0 ppc64el 251.4-3 [434 kB] Fetched 434 kB in 0s (34.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt3gl8byw/libsystemd0_251.4-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libbinutils ppc64el 2.38.90.20220713-2 [583 kB] Fetched 583 kB in 0s (46.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0zuu0grd/libbinutils_2.38.90.20220713-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcc1-0 ppc64el 12.2.0-1 [43.4 kB] Fetched 43.4 kB in 1s (32.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8wrphbxc/libcc1-0_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el autoconf all 2.71-2 [343 kB] Fetched 343 kB in 0s (30.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7h1cmvub/autoconf_2.71-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libaudit-common all 1:3.0.7-1 [16.0 kB] Fetched 16.0 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit-common_1%3a3.0.7-1_all.deb' to '/srv/rebuilderd/tmp/tmptck2y3n9/libaudit-common_3.0.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2+b2 [65.9 kB] Fetched 65.9 kB in 0s (6407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd0gf_x77/librtmp1_2.4+20151223.gitfa8646d.1-2+b2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el ncurses-base all 6.3+20220423-2 [282 kB] Fetched 282 kB in 0s (23.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa_l519vv/ncurses-base_6.3+20220423-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-4.1 [96.0 kB] Fetched 96.0 kB in 0s (0 B/s) dpkg-name: info: moved 'zlib1g_1%3a1.2.11.dfsg-4.1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpfxni2ify/zlib1g_1.2.11.dfsg-4.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libc6-dev ppc64el 2.34-7 [1989 kB] Fetched 1989 kB in 2s (901 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5llfjetb/libc6-dev_2.34-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el liblz4-1 ppc64el 1.9.4-1 [78.1 kB] Fetched 78.1 kB in 0s (7792 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuf_hwjf5/liblz4-1_1.9.4-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el grep ppc64el 3.7-1 [411 kB] Fetched 411 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsnzampzk/grep_3.7-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el help2man ppc64el 1.49.2 [203 kB] Fetched 203 kB in 1s (142 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjqmx2el4/help2man_1.49.2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcap-ng0 ppc64el 0.8.3-1+b1 [19.9 kB] Fetched 19.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplyvv0_9v/libcap-ng0_0.8.3-1+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libbsd0 ppc64el 0.11.6-1 [119 kB] Fetched 119 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3vo8gd5z/libbsd0_0.11.6-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libexpat1 ppc64el 2.4.8-1 [105 kB] Fetched 105 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwuk2qy62/libexpat1_2.4.8-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1+b1 [750 kB] Fetched 750 kB in 0s (45.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpexppczaz/libxml2_2.9.14+dfsg-1+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el samtools ppc64el 1.13-4 [599 kB] Fetched 599 kB in 2s (290 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfcbj_79t/samtools_1.13-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el util-linux ppc64el 2.38.1-1 [1272 kB] Fetched 1272 kB in 0s (88.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpha2h16ov/util-linux_2.38.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libbrotli1 ppc64el 1.0.9-2+b4 [289 kB] Fetched 289 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnngmfsrh/libbrotli1_1.0.9-2+b4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libsmartcols1 ppc64el 2.38.1-1 [175 kB] Fetched 175 kB in 0s (16.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtibtb8s/libsmartcols1_2.38.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libidn2-0 ppc64el 2.3.3-1+b1 [126 kB] Fetched 126 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp128453nx/libidn2-0_2.3.3-1+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el liblzma5 ppc64el 5.2.5-2.1 [177 kB] Fetched 177 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpplqfo2ya/liblzma5_5.2.5-2.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el m4 ppc64el 1.4.19-1 [305 kB] Fetched 305 kB in 0s (28.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyyldhhsy/m4_1.4.19-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libtiff5 ppc64el 4.4.0-4 [323 kB] Fetched 323 kB in 0s (28.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ddhfbxf/libtiff5_4.4.0-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el g++-12 ppc64el 12.2.0-1 [9738 kB] Fetched 9738 kB in 3s (3373 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3d9egkc5/g++-12_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libip4tc2 ppc64el 1.8.8-1 [38.1 kB] Fetched 38.1 kB in 1s (29.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5nmpwf2/libip4tc2_1.8.8-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libmagic-mgc ppc64el 1:5.41-4 [295 kB] Fetched 295 kB in 0s (24.4 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.41-4_ppc64el.deb' to '/srv/rebuilderd/tmp/tmphfpmkczh/libmagic-mgc_5.41-4_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el bsdutils ppc64el 1:2.38.1-1 [158 kB] Fetched 158 kB in 0s (14.8 MB/s) dpkg-name: info: moved 'bsdutils_1%3a2.38.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpa67_heyk/bsdutils_2.38.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcrypt1 ppc64el 1:4.4.28-2 [97.6 kB] Fetched 97.6 kB in 0s (0 B/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.28-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmplr7sbd0j/libcrypt1_4.4.28-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgcrypt20 ppc64el 1.10.1-2 [753 kB] Fetched 753 kB in 0s (55.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2pxqh7t/libgcrypt20_1.10.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpangoft2-1.0-0 ppc64el 1.50.9+ds-1 [79.4 kB] Fetched 79.4 kB in 1s (70.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_c6_8ai5/libpangoft2-1.0-0_1.50.9+ds-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el sensible-utils all 0.0.17 [21.5 kB] Fetched 21.5 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rssse1p/sensible-utils_0.0.17_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el readline-common all 8.2~rc2-2 [75.8 kB] Fetched 75.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpavsr73jw/readline-common_8.2~rc2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main ppc64el po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm9f8sxrx/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libkeyutils1 ppc64el 1.6.3-1 [16.9 kB] Fetched 16.9 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsbuouy1y/libkeyutils1_1.6.3-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libx11-data all 2:1.8.1-2 [308 kB] Fetched 308 kB in 0s (0 B/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.1-2_all.deb' to '/srv/rebuilderd/tmp/tmpqnigi7z8/libx11-data_1.8.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el dpkg-dev all 1.21.9 [2361 kB] Fetched 2361 kB in 0s (124 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp13wnwkzh/dpkg-dev_1.21.9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libquadmath0 ppc64el 12.2.0-1 [149 kB] Fetched 149 kB in 1s (163 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4nc4tyh4/libquadmath0_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el liblab-gamut1 ppc64el 2.42.2-7 [221 kB] Fetched 221 kB in 2s (125 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsrdduj_v/liblab-gamut1_2.42.2-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el python3-ruffus all 2.8.4-4 [152 kB] Fetched 152 kB in 2s (82.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptejy85de/python3-ruffus_2.8.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libsystemd-shared ppc64el 251.4-3 [1759 kB] Fetched 1759 kB in 2s (786 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp54ei7_5k/libsystemd-shared_251.4-3_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el fontconfig-config all 2.13.1-4.4 [281 kB] Fetched 281 kB in 0s (21.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplgsqnfe2/fontconfig-config_2.13.1-4.4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libxpm4 ppc64el 1:3.5.12-1 [46.9 kB] Fetched 46.9 kB in 0s (0 B/s) dpkg-name: info: moved 'libxpm4_1%3a3.5.12-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp4nbbe1er/libxpm4_3.5.12-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el media-types all 8.0.0 [33.4 kB] Fetched 33.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp80j5qn0x/media-types_8.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpython3-stdlib ppc64el 3.10.6-1 [21.7 kB] Fetched 21.7 kB in 1s (16.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0lofqgg/libpython3-stdlib_3.10.6-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el patch ppc64el 2.7.6-7 [134 kB] Fetched 134 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptp4r9798/patch_2.7.6-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libaudit1 ppc64el 1:3.0.7-1+b1 [55.6 kB] Fetched 55.6 kB in 0s (0 B/s) dpkg-name: info: moved 'libaudit1_1%3a3.0.7-1+b1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpt_wo74tl/libaudit1_3.0.7-1+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libtirpc-dev ppc64el 1.3.3+ds-1 [209 kB] Fetched 209 kB in 0s (19.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph3776ck5/libtirpc-dev_1.3.3+ds-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el perl ppc64el 5.34.0-5 [298 kB] Fetched 298 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp76dk2ted/perl_5.34.0-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el libcurl3-gnutls ppc64el 7.85.0-1 [378 kB] Fetched 378 kB in 0s (31.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplpws7gj8/libcurl3-gnutls_7.85.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el gzip ppc64el 1.12-1 [144 kB] Fetched 144 kB in 0s (11.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_huritc8/gzip_1.12-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgssapi-krb5-2 ppc64el 1.20-1 [182 kB] Fetched 182 kB in 0s (16.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp25zut5m2/libgssapi-krb5-2_1.20-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libhtscodecs2 ppc64el 1.2.2-1 [64.8 kB] Fetched 64.8 kB in 2s (42.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpke66imnv/libhtscodecs2_1.2.2-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libice6 ppc64el 2:1.0.10-1 [63.3 kB] Fetched 63.3 kB in 0s (6113 kB/s) dpkg-name: info: moved 'libice6_2%3a1.0.10-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpyvtqgz8g/libice6_1.0.10-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el python3 ppc64el 3.10.6-1 [38.2 kB] Fetched 38.2 kB in 2s (23.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprk65nl26/python3_3.10.6-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libpam-runtime all 1.5.2-2 [200 kB] Fetched 200 kB in 0s (18.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj1ciwjdd/libpam-runtime_1.5.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libstdc++-12-dev ppc64el 12.2.0-1 [2158 kB] Fetched 2158 kB in 2s (913 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqi6ueia2/libstdc++-12-dev_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el bzip2 ppc64el 1.0.8-5 [50.6 kB] Fetched 50.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu_sxa1iv/bzip2_1.0.8-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.185-1 [131 kB] Fetched 131 kB in 2s (81.8 kB/s) dpkg-name: info: moved 'libdevmapper1.02.1_2%3a1.02.185-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmp58cqd5ly/libdevmapper1.02.1_1.02.185-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el build-essential ppc64el 12.9 [7712 B] Fetched 7712 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9_wvt2mq/build-essential_12.9_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libmpdec3 ppc64el 2.5.1-2 [97.3 kB] Fetched 97.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiithmr_h/libmpdec3_2.5.1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libnsl2 ppc64el 1.3.0-2 [44.8 kB] Fetched 44.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_txdg04v/libnsl2_1.3.0-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el python3-lib2to3 all 3.10.6-1 [79.9 kB] Fetched 79.9 kB in 1s (56.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9pdkgefb/python3-lib2to3_3.10.6-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Fetched 26.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuu1j9cao/libfile-stripnondeterminism-perl_1.13.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el liblocale-gettext-perl ppc64el 1.07-4+b2 [19.6 kB] Fetched 19.6 kB in 1s (20.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpihrpqsdw/liblocale-gettext-perl_1.07-4+b2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libctf0 ppc64el 2.38.90.20220713-2 [96.1 kB] Fetched 96.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6iuigg41/libctf0_2.38.90.20220713-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el automake all 1:1.16.5-1.3 [823 kB] Fetched 823 kB in 0s (47.0 MB/s) dpkg-name: info: moved 'automake_1%3a1.16.5-1.3_all.deb' to '/srv/rebuilderd/tmp/tmpwf676ski/automake_1.16.5-1.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libctf-nobfd0 ppc64el 2.38.90.20220713-2 [156 kB] Fetched 156 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7wdrk8ui/libctf-nobfd0_2.38.90.20220713-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el coreutils ppc64el 8.32-4.1 [2875 kB] Fetched 2875 kB in 0s (110 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvy6rqqpk/coreutils_8.32-4.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libcgraph6 ppc64el 2.42.2-7 [89.1 kB] Fetched 89.1 kB in 1s (72.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpujkl8nhe/libcgraph6_2.42.2-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el make ppc64el 4.3-4.1 [404 kB] Fetched 404 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0426o71/make_4.3-4.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libuchardet0 ppc64el 0.0.7-1 [70.3 kB] Fetched 70.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4amcdlky/libuchardet0_0.0.7-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgcc-s1 ppc64el 12.2.0-1 [31.4 kB] Fetched 31.4 kB in 1s (36.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp363fh6dc/libgcc-s1_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libtsan2 ppc64el 12.2.0-1 [2263 kB] Fetched 2263 kB in 2s (954 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5qgazwfw/libtsan2_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libstdc++6 ppc64el 12.2.0-1 [705 kB] Fetched 705 kB in 2s (419 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzcbrgs9n/libstdc++6_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libsqlite3-0 ppc64el 3.39.2-1 [889 kB] Fetched 889 kB in 0s (70.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6dyjivqi/libsqlite3-0_3.39.2-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libann0 ppc64el 1.1.2+doc-7 [28.1 kB] Fetched 28.1 kB in 1s (34.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8fkyw9k4/libann0_1.1.2+doc-7_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libattr1 ppc64el 1:2.5.1-1 [22.8 kB] Fetched 22.8 kB in 0s (2180 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.1-1_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpsjtez_wu/libattr1_2.5.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgcc-12-dev ppc64el 12.2.0-1 [1319 kB] Fetched 1319 kB in 2s (709 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplm5_qqjq/libgcc-12-dev_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el man-db ppc64el 2.10.2-2 [1436 kB] Fetched 1436 kB in 2s (718 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz1lyhwla/man-db_2.10.2-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220921T235202Z bookworm/main ppc64el libbamtools-dev ppc64el 2.5.2+dfsg-2 [228 kB] Fetched 228 kB in 1s (166 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaemiub0g/libbamtools-dev_2.5.2+dfsg-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libnghttp2-14 ppc64el 1.49.0-1 [88.6 kB] Fetched 88.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ucqt_yn/libnghttp2-14_1.49.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libapparmor1 ppc64el 3.0.7-1 [106 kB] Fetched 106 kB in 2s (64.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptvnwgmoh/libapparmor1_3.0.7-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libtinfo6 ppc64el 6.3+20220423-2 [361 kB] Fetched 361 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk5aw78r7/libtinfo6_6.3+20220423-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el python3-pysam ppc64el 0.17.0+ds-2+b2 [1632 kB] Fetched 1632 kB in 2s (768 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ogot4n9/python3-pysam_0.17.0+ds-2+b2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgts-0.7-5 ppc64el 0.7.6+darcs121130-5 [169 kB] Fetched 169 kB in 1s (221 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpglsnk3hi/libgts-0.7-5_0.7.6+darcs121130-5_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el login ppc64el 1:4.11.1+dfsg1-2 [618 kB] Fetched 618 kB in 0s (52.6 MB/s) dpkg-name: info: moved 'login_1%3a4.11.1+dfsg1-2_ppc64el.deb' to '/srv/rebuilderd/tmp/tmpr7az9wp5/login_4.11.1+dfsg1-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libk5crypto3 ppc64el 1.20-1 [123 kB] Fetched 123 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3t4penwl/libk5crypto3_1.20-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libfribidi0 ppc64el 1.0.8-2.1 [66.1 kB] Fetched 66.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf_1uhf5z/libfribidi0_1.0.8-2.1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libthai0 ppc64el 0.1.29-1 [59.4 kB] Fetched 59.4 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpymt0s5m9/libthai0_0.1.29-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libblkid1 ppc64el 2.38.1-1 [223 kB] Fetched 223 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps5juhmed/libblkid1_2.38.1-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el ncurses-bin ppc64el 6.3+20220423-2 [446 kB] Fetched 446 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvy_nz1hz/ncurses-bin_6.3+20220423-2_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libunistring2 ppc64el 1.0-1 [422 kB] Fetched 422 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1azg9z9o/libunistring2_1.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libgomp1 ppc64el 12.2.0-1 [123 kB] Fetched 123 kB in 2s (73.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpopr5yjpb/libgomp1_12.2.0-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libtirpc3 ppc64el 1.3.3+ds-1 [96.7 kB] Fetched 96.7 kB in 0s (8049 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsqywsksk/libtirpc3_1.3.3+ds-1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libssh2-1 ppc64el 1.10.0-3+b1 [189 kB] Fetched 189 kB in 0s (15.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkmx0ctj_/libssh2-1_1.10.0-3+b1_ppc64el.deb' Get:1 http://snapshot.debian.org/archive/debian/20220903T155935Z bookworm/main ppc64el libzstd1 ppc64el 1.5.2+dfsg-1 [295 kB] Fetched 295 kB in 0s (26.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmtdkccpa/libzstd1_1.5.2+dfsg-1_ppc64el.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture ppc64el dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_ppc64el.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_ppc64el.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp2e84nd53/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture ppc64el is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.2VTd_oFo7d as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.2VTd_oFo7d 127.0.0.1 - - [27/Nov/2025 03:20:24] code 404, message File not found 127.0.0.1 - - [27/Nov/2025 03:20:24] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:35127 ./ InRelease 127.0.0.1 - - [27/Nov/2025 03:20:24] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:35127 ./ Release [462 B] 127.0.0.1 - - [27/Nov/2025 03:20:24] code 404, message File not found 127.0.0.1 - - [27/Nov/2025 03:20:24] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:35127 ./ Release.gpg 127.0.0.1 - - [27/Nov/2025 03:20:24] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:35127 ./ Packages [316 kB] Fetched 316 kB in 0s (13.7 MB/s) Reading package lists... no package providing usr-is-merged found -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./gcc-12-base_12.2.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libc6_2.34-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libgcc-s1_12.2.0-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./mawk_1.3.4.20200120-3.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./base-files_12.2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libtinfo6_6.3%2b20220423-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./debianutils_5.7-0.3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./bash_5.2%7erc2-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libcap2_2.44-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libgpg-error0_1.45-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libgcrypt20_1.10.1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./liblz4-1_1.9.4-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./liblzma5_5.2.5-2.1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libzstd1_1.5.2%2bdfsg-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libsystemd0_251.4-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./bsdutils_2.38.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libacl1_2.3.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libattr1_2.5.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libgmp10_6.2.1%2bdfsg1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libpcre2-8-0_10.40-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libselinux1_3.4-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./coreutils_8.32-4.1_ppc64el.deb HTTP/1.1" 200 - 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127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libaudit-common_3.0.7-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libcap-ng0_0.8.3-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libaudit1_3.0.7-1%2bb1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libcrypt1_4.4.28-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./perl-base_5.34.0-5_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./debconf_1.5.79_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libpam0g_1.5.2-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libdb5.3_5.3.28%2bdfsg1-0.10_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libpam-modules-bin_1.5.2-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libpam-modules_1.5.2-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libpam-runtime_1.5.2-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./login_4.11.1%2bdfsg1-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./ncurses-bin_6.3%2b20220423-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./sed_4.8-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libblkid1_2.38.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libmount1_2.38.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libsmartcols1_2.38.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libudev1_251.4-3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libuuid1_2.38.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./util-linux-extra_2.38.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./util-linux_2.38.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libdebconfclient0_0.264_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./base-passwd_3.6.0_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./init-system-helpers_1.64_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./libc-bin_2.34-7_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./ncurses-base_6.3%2b20220423-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./lsb-base_11.2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:25] "GET /./sysvinit-utils_3.04-1_ppc64el.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.2VTd_oFo7d 127.0.0.1 - - [27/Nov/2025 03:20:27] code 404, message File not found 127.0.0.1 - - [27/Nov/2025 03:20:27] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:35127 ./ InRelease 127.0.0.1 - - [27/Nov/2025 03:20:27] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:35127 ./ Release 127.0.0.1 - - [27/Nov/2025 03:20:27] code 404, message File not found 127.0.0.1 - - [27/Nov/2025 03:20:27] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:35127 ./ Release.gpg Reading package lists... no package providing usr-is-merged found -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.2VTd_oFo7d no package called usr-is-merged is installed -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [27/Nov/2025 03:20:36] "GET /./liblocale-gettext-perl_1.07-4%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:36] "GET /./mount_2.38.1-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:36] "GET /./libargon2-1_0%7e20171227-0.3_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:36] "GET /./dmsetup_1.02.185-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:36] "GET /./libdevmapper1.02.1_1.02.185-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:36] "GET /./libjson-c5_0.16-1_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:36] "GET /./libssl3_3.0.5-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:36] "GET /./libcryptsetup12_2.5.0-2_ppc64el.deb HTTP/1.1" 200 - 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127.0.0.1 - - [27/Nov/2025 03:20:37] "GET /./help2man_1.49.2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:37] "GET /./samtools_1.13-4_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:37] "GET /./python3-ruffus_2.8.4-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:37] "GET /./libbamtools-dev_2.5.2%2bdfsg-2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:37] "GET /./python3-pysam_0.17.0%2bds-2%2bb2_ppc64el.deb HTTP/1.1" 200 - 127.0.0.1 - - [27/Nov/2025 03:20:37] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp2e84nd53/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.2VTd_oFo7d Reading package lists... Building dependency tree... Reading state information... libx11-6 is already the newest version (2:1.8.1-2). libx11-6 set to manually installed. libdb5.3 is already the newest version (5.3.28+dfsg1-0.10). libldap-2.5-0 is already the newest version (2.5.12+dfsg-2+b1). libldap-2.5-0 set to manually installed. dash is already the newest version (0.5.11+git20210903+057cd650a4ed-8). libsasl2-modules-db is already the newest version (2.1.28+dfsg-7). libsasl2-modules-db set to manually installed. libxau6 is already the newest version (1:1.0.9-1). libxau6 set to manually installed. base-files is already the newest version (12.2). dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. fontconfig is already the newest version (2.13.1-4.4). fontconfig set to manually installed. libc-dev-bin is already the newest version (2.34-7). libc-dev-bin set to manually installed. libxcb-shm0 is already the newest version (1.15-1). libxcb-shm0 set to manually installed. perl-modules-5.34 is already the newest version (5.34.0-5). perl-modules-5.34 set to manually installed. libmagic1 is already the newest version (1:5.41-4). libmagic1 set to manually installed. libpsl5 is already the newest version (0.21.0-1.2). libpsl5 set to manually installed. libpathplan4 is already the newest version (2.42.2-7). libpathplan4 set to manually installed. systemd is already the newest version (251.4-3). systemd set to manually installed. fonts-dejavu-core is already the newest version (2.37-2). fonts-dejavu-core set to manually installed. libbz2-1.0 is already the newest version (1.0.8-5). libltdl7 is already the newest version (2.4.7-4). libltdl7 set to manually installed. graphviz is already the newest version (2.42.2-7). graphviz set to manually installed. libcap2 is already the newest version (1:2.44-1). gettext-base is already the newest version (0.21-9). gettext-base set to manually installed. file is already the newest version (1:5.41-4). file set to manually installed. libc6 is already the newest version (2.34-7). libgvc6 is already the newest version (2.42.2-7). libgvc6 set to manually installed. libgvpr2 is already the newest version (2.42.2-7). libgvpr2 set to manually installed. libxdmcp6 is already the newest version (1:1.1.2-3). libxdmcp6 set to manually installed. lsb-base is already the newest version (11.2). libasan8 is already the newest version (12.2.0-1). libasan8 set to manually installed. util-linux-extra is already the newest version (2.38.1-1). libglib2.0-0 is already the newest version (2.73.3-3). libglib2.0-0 set to manually installed. libubsan1 is already the newest version (12.2.0-1). libubsan1 set to manually installed. mawk is already the newest version (1.3.4.20200120-3.1). x11-common is already the newest version (1:7.7+23). x11-common set to manually installed. libnsl-dev is already the newest version (1.3.0-2). libnsl-dev set to manually installed. zlib1g-dev is already the newest version (1:1.2.11.dfsg-4.1). zlib1g-dev set to manually installed. init-system-helpers is already the newest version (1.64). libitm1 is already the newest version (12.2.0-1). libitm1 set to manually installed. libseccomp2 is already the newest version (2.5.4-1+b1). libseccomp2 set to manually installed. libxaw7 is already the newest version (2:1.0.14-1). libxaw7 set to manually installed. libatomic1 is already the newest version (12.2.0-1). libatomic1 set to manually installed. libhogweed6 is already the newest version (3.8.1-2). libhogweed6 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.5). intltool-debian set to manually installed. libncursesw6 is already the newest version (6.3+20220423-2). libncursesw6 set to manually installed. libfreetype6 is already the newest version (2.12.1+dfsg-3). libfreetype6 set to manually installed. libpython3.10-stdlib is already the newest version (3.10.6-1). libpython3.10-stdlib set to manually installed. libxcb-render0 is already the newest version (1.15-1). libxcb-render0 set to manually installed. libc-bin is already the newest version (2.34-7). python3.10 is already the newest version (3.10.6-1). python3.10 set to manually installed. libpcre2-8-0 is already the newest version (10.40-1). libp11-kit0 is already the newest version (0.24.1-1). libp11-kit0 set to manually installed. debianutils is already the newest version (5.7-0.3). groff-base is already the newest version (1.22.4-8). groff-base set to manually installed. binutils-powerpc64le-linux-gnu is already the newest version (2.38.90.20220713-2). binutils-powerpc64le-linux-gnu set to manually installed. binutils is already the newest version (2.38.90.20220713-2). binutils set to manually installed. dwz is already the newest version (0.14-1). dwz set to manually installed. liblsan0 is already the newest version (12.2.0-1). liblsan0 set to manually installed. libgdbm6 is already the newest version (1.23-1+b1). libgdbm6 set to manually installed. libudev1 is already the newest version (251.4-3). debhelper is already the newest version (13.9.1). debhelper set to manually installed. libncurses6 is already the newest version (6.3+20220423-2). libncurses6 set to manually installed. linux-libc-dev is already the newest version (5.18.16-1). linux-libc-dev set to manually installed. libfontconfig1 is already the newest version (2.13.1-4.4). libfontconfig1 set to manually installed. libpython3.10-minimal is already the newest version (3.10.6-1). libpython3.10-minimal set to manually installed. libssl3 is already the newest version (3.0.5-2). libssl3 set to manually installed. findutils is already the newest version (4.9.0-3). dh-python is already the newest version (5.20220819). dh-python set to manually installed. libpam-modules-bin is already the newest version (1.5.2-2). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libgmp10 is already the newest version (2:6.2.1+dfsg1-1). libpipeline1 is already the newest version (1.5.6-2). libpipeline1 set to manually installed. libpng16-16 is already the newest version (1.6.37-5). libpng16-16 set to manually installed. libjson-c5 is already the newest version (0.16-1). libjson-c5 set to manually installed. libelf1 is already the newest version (0.187-1). libelf1 set to manually installed. libmpfr6 is already the newest version (4.1.0-3). libmpfr6 set to manually installed. python3-minimal is already the newest version (3.10.6-1). python3-minimal set to manually installed. hostname is already the newest version (3.23). libthai-data is already the newest version (0.1.29-1). libthai-data set to manually installed. libjpeg62-turbo is already the newest version (1:2.1.2-1). libjpeg62-turbo set to manually installed. autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. libgraphite2-3 is already the newest version (1.3.14-1). libgraphite2-3 set to manually installed. diffutils is already the newest version (1:3.8-1). libargon2-1 is already the newest version (0~20171227-0.3). libargon2-1 set to manually installed. libgd3 is already the newest version (2.3.3-6). libgd3 set to manually installed. libcairo2 is already the newest version (1.16.0-6). libcairo2 set to manually installed. libperl5.34 is already the newest version (5.34.0-5). libperl5.34 set to manually installed. cpp is already the newest version (4:12.2.0-1). cpp set to manually installed. libxcb1 is already the newest version (1.15-1). libxcb1 set to manually installed. libdatrie1 is already the newest version (0.2.13-2). libdatrie1 set to manually installed. libgpg-error0 is already the newest version (1.45-2). libsm6 is already the newest version (2:1.2.3-1). libsm6 set to manually installed. libxmu6 is already the newest version (2:1.1.3-3). libxmu6 set to manually installed. libcrypt-dev is already the newest version (1:4.4.28-2). libcrypt-dev set to manually installed. libjbig0 is already the newest version (2.1-3.1+b2). libjbig0 set to manually installed. libcom-err2 is already the newest version (1.46.5-2). libcom-err2 set to manually installed. libnettle8 is already the newest version (3.8.1-2). libnettle8 set to manually installed. debconf is already the newest version (1.5.79). sysvinit-utils is already the newest version (3.04-1). xz-utils is already the newest version (5.2.5-2.1). xz-utils set to manually installed. dmsetup is already the newest version (2:1.02.185-1). dmsetup set to manually installed. libdpkg-perl is already the newest version (1.21.9). libdpkg-perl set to manually installed. libhts3 is already the newest version (1.13+ds-2+b1). libhts3 set to manually installed. cpp-12 is already the newest version (12.2.0-1). cpp-12 set to manually installed. libkmod2 is already the newest version (30+20220630-3). libkmod2 set to manually installed. libtasn1-6 is already the newest version (4.18.0-4). libtasn1-6 set to manually installed. libfdisk1 is already the newest version (2.38.1-1). libfdisk1 set to manually installed. libtool is already the newest version (2.4.7-4). libtool set to manually installed. libcryptsetup12 is already the newest version (2:2.5.0-2). libcryptsetup12 set to manually installed. libdebhelper-perl is already the newest version (13.9.1). libdebhelper-perl set to manually installed. libpixman-1-0 is already the newest version (0.40.0-1). libpixman-1-0 set to manually installed. binutils-common is already the newest version (2.38.90.20220713-2). binutils-common set to manually installed. gettext is already the newest version (0.21-9). gettext set to manually installed. libkrb5support0 is already the newest version (1.20-1). libkrb5support0 set to manually installed. libicu71 is already the newest version (71.1-3). libicu71 set to manually installed. autopoint is already the newest version (0.21-9). autopoint set to manually installed. mount is already the newest version (2.38.1-1). mount set to manually installed. python3.10-minimal is already the newest version (3.10.6-1). python3.10-minimal set to manually installed. libisl23 is already the newest version (0.25-1). libisl23 set to manually installed. libpangocairo-1.0-0 is already the newest version (1.50.9+ds-1). libpangocairo-1.0-0 set to manually installed. libuuid1 is already the newest version (2.38.1-1). bsdextrautils is already the newest version (2.38.1-1). bsdextrautils set to manually installed. libharfbuzz0b is already the newest version (2.7.4-1+b1). libharfbuzz0b set to manually installed. libdeflate0 is already the newest version (1.12-1). libdeflate0 set to manually installed. libtirpc-common is already the newest version (1.3.3+ds-1). libtirpc-common set to manually installed. libselinux1 is already the newest version (3.4-1+b1). libxt6 is already the newest version (1:1.2.1-1). libxt6 set to manually installed. libreadline8 is already the newest version (8.2~rc2-2). libreadline8 set to manually installed. libsparsehash-dev is already the newest version (2.0.3-2). libsparsehash-dev set to manually installed. rpcsvc-proto is already the newest version (1.4.2-4). rpcsvc-proto set to manually installed. perl-base is already the newest version (5.34.0-5). libbamtools2.5.2 is already the newest version (2.5.2+dfsg-2). libbamtools2.5.2 set to manually installed. gcc-12-base is already the newest version (12.2.0-1). libmd0 is already the newest version (1.0.4-2). libmd0 set to manually installed. python3-distutils is already the newest version (3.10.6-1). python3-distutils set to manually installed. libgdbm-compat4 is already the newest version (1.23-1+b1). libgdbm-compat4 set to manually installed. libmount1 is already the newest version (2.38.1-1). libpam0g is already the newest version (1.5.2-2). libsasl2-2 is already the newest version (2.1.28+dfsg-7). libsasl2-2 set to manually installed. bash is already the newest version (5.2~rc2-2). dh-strip-nondeterminism is already the newest version (1.13.0-1). dh-strip-nondeterminism set to manually installed. gcc-12 is already the newest version (12.2.0-1). gcc-12 set to manually installed. libffi8 is already the newest version (3.4.2-4). libffi8 set to manually installed. libxrender1 is already the newest version (1:0.9.10-1.1). libxrender1 set to manually installed. libsub-override-perl is already the newest version (0.09-3). libsub-override-perl set to manually installed. libmpc3 is already the newest version (1.2.1-2). libmpc3 set to manually installed. libxext6 is already the newest version (2:1.3.4-1). libxext6 set to manually installed. libpcre3 is already the newest version (2:8.39-14). libkrb5-3 is already the newest version (1.20-1). libkrb5-3 set to manually installed. libdebconfclient0 is already the newest version (0.264). g++ is already the newest version (4:12.2.0-1). g++ set to manually installed. libgnutls30 is already the newest version (3.7.7-2). libgnutls30 set to manually installed. ucf is already the newest version (3.0043). ucf set to manually installed. liblerc4 is already the newest version (4.0.0+ds-1). liblerc4 set to manually installed. gcc is already the newest version (4:12.2.0-1). gcc set to manually installed. sed is already the newest version (4.8-1). base-passwd is already the newest version (3.6.0). libpam-modules is already the newest version (1.5.2-2). libwebp7 is already the newest version (1.2.2-2+b1). libwebp7 set to manually installed. libacl1 is already the newest version (2.3.1-1). dpkg is already the newest version (1.21.9). tar is already the newest version (1.34+dfsg-1). libcdt5 is already the newest version (2.42.2-7). libcdt5 set to manually installed. libpango-1.0-0 is already the newest version (1.50.9+ds-1). libpango-1.0-0 set to manually installed. libsystemd0 is already the newest version (251.4-3). libbinutils is already the newest version (2.38.90.20220713-2). libbinutils set to manually installed. libcc1-0 is already the newest version (12.2.0-1). libcc1-0 set to manually installed. autoconf is already the newest version (2.71-2). autoconf set to manually installed. libaudit-common is already the newest version (1:3.0.7-1). librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b2). librtmp1 set to manually installed. ncurses-base is already the newest version (6.3+20220423-2). zlib1g is already the newest version (1:1.2.11.dfsg-4.1). libc6-dev is already the newest version (2.34-7). libc6-dev set to manually installed. liblz4-1 is already the newest version (1.9.4-1). grep is already the newest version (3.7-1). help2man is already the newest version (1.49.2). help2man set to manually installed. libcap-ng0 is already the newest version (0.8.3-1+b1). libbsd0 is already the newest version (0.11.6-1). libbsd0 set to manually installed. libexpat1 is already the newest version (2.4.8-1). libexpat1 set to manually installed. libxml2 is already the newest version (2.9.14+dfsg-1+b1). libxml2 set to manually installed. samtools is already the newest version (1.13-4). samtools set to manually installed. util-linux is already the newest version (2.38.1-1). libbrotli1 is already the newest version (1.0.9-2+b4). libbrotli1 set to manually installed. libsmartcols1 is already the newest version (2.38.1-1). libidn2-0 is already the newest version (2.3.3-1+b1). libidn2-0 set to manually installed. liblzma5 is already the newest version (5.2.5-2.1). m4 is already the newest version (1.4.19-1). m4 set to manually installed. libtiff5 is already the newest version (4.4.0-4). libtiff5 set to manually installed. g++-12 is already the newest version (12.2.0-1). g++-12 set to manually installed. libip4tc2 is already the newest version (1.8.8-1). libip4tc2 set to manually installed. libmagic-mgc is already the newest version (1:5.41-4). libmagic-mgc set to manually installed. bsdutils is already the newest version (1:2.38.1-1). libcrypt1 is already the newest version (1:4.4.28-2). libgcrypt20 is already the newest version (1.10.1-2). libpangoft2-1.0-0 is already the newest version (1.50.9+ds-1). libpangoft2-1.0-0 set to manually installed. sensible-utils is already the newest version (0.0.17). sensible-utils set to manually installed. readline-common is already the newest version (8.2~rc2-2). readline-common set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libkeyutils1 is already the newest version (1.6.3-1). libkeyutils1 set to manually installed. libx11-data is already the newest version (2:1.8.1-2). libx11-data set to manually installed. dpkg-dev is already the newest version (1.21.9). dpkg-dev set to manually installed. libquadmath0 is already the newest version (12.2.0-1). libquadmath0 set to manually installed. liblab-gamut1 is already the newest version (2.42.2-7). liblab-gamut1 set to manually installed. python3-ruffus is already the newest version (2.8.4-4). python3-ruffus set to manually installed. libsystemd-shared is already the newest version (251.4-3). libsystemd-shared set to manually installed. fontconfig-config is already the newest version (2.13.1-4.4). fontconfig-config set to manually installed. libxpm4 is already the newest version (1:3.5.12-1). libxpm4 set to manually installed. media-types is already the newest version (8.0.0). media-types set to manually installed. libpython3-stdlib is already the newest version (3.10.6-1). libpython3-stdlib set to manually installed. patch is already the newest version (2.7.6-7). patch set to manually installed. libaudit1 is already the newest version (1:3.0.7-1+b1). libtirpc-dev is already the newest version (1.3.3+ds-1). libtirpc-dev set to manually installed. perl is already the newest version (5.34.0-5). perl set to manually installed. libcurl3-gnutls is already the newest version (7.85.0-1). libcurl3-gnutls set to manually installed. gzip is already the newest version (1.12-1). libgssapi-krb5-2 is already the newest version (1.20-1). libgssapi-krb5-2 set to manually installed. libhtscodecs2 is already the newest version (1.2.2-1). libhtscodecs2 set to manually installed. libice6 is already the newest version (2:1.0.10-1). libice6 set to manually installed. python3 is already the newest version (3.10.6-1). python3 set to manually installed. libpam-runtime is already the newest version (1.5.2-2). libstdc++-12-dev is already the newest version (12.2.0-1). libstdc++-12-dev set to manually installed. bzip2 is already the newest version (1.0.8-5). bzip2 set to manually installed. libdevmapper1.02.1 is already the newest version (2:1.02.185-1). libdevmapper1.02.1 set to manually installed. build-essential is already the newest version (12.9). build-essential set to manually installed. libmpdec3 is already the newest version (2.5.1-2). libmpdec3 set to manually installed. libnsl2 is already the newest version (1.3.0-2). libnsl2 set to manually installed. python3-lib2to3 is already the newest version (3.10.6-1). python3-lib2to3 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.13.0-1). libfile-stripnondeterminism-perl set to manually installed. liblocale-gettext-perl is already the newest version (1.07-4+b2). liblocale-gettext-perl set to manually installed. libctf0 is already the newest version (2.38.90.20220713-2). libctf0 set to manually installed. automake is already the newest version (1:1.16.5-1.3). automake set to manually installed. libctf-nobfd0 is already the newest version (2.38.90.20220713-2). libctf-nobfd0 set to manually installed. coreutils is already the newest version (8.32-4.1). libcgraph6 is already the newest version (2.42.2-7). libcgraph6 set to manually installed. make is already the newest version (4.3-4.1). make set to manually installed. libuchardet0 is already the newest version (0.0.7-1). libuchardet0 set to manually installed. libgcc-s1 is already the newest version (12.2.0-1). libtsan2 is already the newest version (12.2.0-1). libtsan2 set to manually installed. libstdc++6 is already the newest version (12.2.0-1). libstdc++6 set to manually installed. libsqlite3-0 is already the newest version (3.39.2-1). libsqlite3-0 set to manually installed. libann0 is already the newest version (1.1.2+doc-7). libann0 set to manually installed. libattr1 is already the newest version (1:2.5.1-1). libgcc-12-dev is already the newest version (12.2.0-1). libgcc-12-dev set to manually installed. man-db is already the newest version (2.10.2-2). man-db set to manually installed. libbamtools-dev is already the newest version (2.5.2+dfsg-2). libbamtools-dev set to manually installed. libnghttp2-14 is already the newest version (1.49.0-1). libnghttp2-14 set to manually installed. libapparmor1 is already the newest version (3.0.7-1). libapparmor1 set to manually installed. libtinfo6 is already the newest version (6.3+20220423-2). python3-pysam is already the newest version (0.17.0+ds-2+b2). python3-pysam set to manually installed. libgts-0.7-5 is already the newest version (0.7.6+darcs121130-5). libgts-0.7-5 set to manually installed. login is already the newest version (1:4.11.1+dfsg1-2). libk5crypto3 is already the newest version (1.20-1). libk5crypto3 set to manually installed. libfribidi0 is already the newest version (1.0.8-2.1). libfribidi0 set to manually installed. libthai0 is already the newest version (0.1.29-1). libthai0 set to manually installed. libblkid1 is already the newest version (2.38.1-1). ncurses-bin is already the newest version (6.3+20220423-2). libunistring2 is already the newest version (1.0-1). libunistring2 set to manually installed. libgomp1 is already the newest version (12.2.0-1). libgomp1 set to manually installed. libtirpc3 is already the newest version (1.3.3+ds-1). libtirpc3 set to manually installed. libssh2-1 is already the newest version (1.10.0-3+b1). libssh2-1 set to manually installed. libzstd1 is already the newest version (1.5.2+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.2VTd_oFo7d (Reading database ... 15122 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.2VTd_oFo7d I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.2VTd_oFo7d I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.2VTd_oFo7d... I: success in 52.2365 seconds Downloading dependency 1 of 260: libx11-6:ppc64el=2:1.8.1-2 Downloading dependency 2 of 260: libdb5.3:ppc64el=5.3.28+dfsg1-0.10 Downloading dependency 3 of 260: libldap-2.5-0:ppc64el=2.5.12+dfsg-2+b1 Downloading dependency 4 of 260: dash:ppc64el=0.5.11+git20210903+057cd650a4ed-8 Downloading dependency 5 of 260: libsasl2-modules-db:ppc64el=2.1.28+dfsg-7 Downloading dependency 6 of 260: libxau6:ppc64el=1:1.0.9-1 Downloading dependency 7 of 260: base-files:ppc64el=12.2 Downloading dependency 8 of 260: dh-autoreconf:ppc64el=20 Downloading dependency 9 of 260: fontconfig:ppc64el=2.13.1-4.4 Downloading dependency 10 of 260: libc-dev-bin:ppc64el=2.34-7 Downloading dependency 11 of 260: libxcb-shm0:ppc64el=1.15-1 Downloading dependency 12 of 260: perl-modules-5.34:ppc64el=5.34.0-5 Downloading dependency 13 of 260: libmagic1:ppc64el=1:5.41-4 Downloading dependency 14 of 260: libpsl5:ppc64el=0.21.0-1.2 Downloading dependency 15 of 260: libpathplan4:ppc64el=2.42.2-7 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SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildL8yefn/debrebuild.sbuildrc.FcKektrthbhv sbuild --build=ppc64el --host=ppc64el --no-source --arch-any --no-arch-all --binNMU-changelog= sga (0.10.15-7+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for ppc64el; no source changes. * Rebuild against libbamtools2.5.2 -- ppc64el Build Daemon (ppc64el-unicamp-01) Fri, 02 Sep 2022 20:08:08 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildL8yefn/debrebuild.tar.m07r9fBELIEp --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --starting-build-commands=grep -iq "^Rules-Requires-Root:" "%p/debian/control" || sed -i "1iRules-Requires-Root: no" "%p/debian/control" --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/sga-trb58E --dsc-dir=sga-0.10.15 /srv/rebuilderd/tmp/rebuilderdHZkxko/inputs/sga_0.10.15-7.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on osuosl7-ppc64el.debian.net +==============================================================================+ | sga 0.10.15-7+b1 (ppc64el) Thu, 27 Nov 2025 03:21:17 +0000 | +==============================================================================+ Package: sga Version: 0.10.15-7+b1 Source Version: 0.10.15-7 Distribution: unstable Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildL8yefn/debrebuild.tar.m07r9fBELIEp to /srv/rebuilderd/tmp/tmp.sbuild.KtCkhwZHVh... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Thu, 27 Nov 2025 03:21:24 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdHZkxko/inputs/sga_0.10.15-7.dsc exists in /srv/rebuilderd/tmp/rebuilderdHZkxko/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 27 Nov 2025 03:21:25 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, libsparsehash-dev, zlib1g-dev | libz-dev, libbamtools-dev, help2man, samtools, python3, python3-ruffus, python3-pysam, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-python, libsparsehash-dev, zlib1g-dev, libbamtools-dev, help2man, samtools, python3, python3-ruffus, python3-pysam, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/sga-trb58E/resolver-w1WoR3/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Thu, 27 Nov 2025 03:21:31 +0000 | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment Thu, 27 Nov 2025 03:21:31 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.57+deb13-powerpc64le-64k #1 SMP Debian 6.12.57-1 (2025-11-05) ppc64el (ppc64le) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-12_12.2.0-1 gcc-12_12.2.0-1 libc6-dev_2.34-7 libstdc++-12-dev_12.2.0-1 libstdc++6_12.2.0-1 linux-libc-dev_5.18.16-1 Package versions: autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.6.0 bash_5.2~rc2-2 binutils_2.38.90.20220713-2 binutils-common_2.38.90.20220713-2 binutils-powerpc64le-linux-gnu_2.38.90.20220713-2 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:12.2.0-1 cpp-12_12.2.0-1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.9.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-python_5.20220819 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dmsetup_2:1.02.185-1 dpkg_1.21.9 dpkg-dev_1.21.9 dwz_0.14-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 g++_4:12.2.0-1 g++-12_12.2.0-1 gcc_4:12.2.0-1 gcc-12_12.2.0-1 gcc-12-base_12.2.0-1 gettext_0.21-9 gettext-base_0.21-9 graphviz_2.42.2-7 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 help2man_1.49.2 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libann0_1.1.2+doc-7 libapparmor1_3.0.7-1 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-1 libatomic1_12.2.0-1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbamtools-dev_2.5.2+dfsg-2 libbamtools2.5.2_2.5.2+dfsg-2 libbinutils_2.38.90.20220713-2 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b4 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5 libc-bin_2.34-7 libc-dev-bin_2.34-7 libc6_2.34-7 libc6-dev_2.34-7 libcairo2_1.16.0-6 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-1 libcdt5_2.42.2-7 libcgraph6_2.42.2-7 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2 libctf0_2.38.90.20220713-2 libcurl3-gnutls_7.85.0-1 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdeflate0_1.12-1 libdevmapper1.02.1_2:1.02.185-1 libdpkg-perl_1.21.9 libelf1_0.187-1 libexpat1_2.4.8-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontconfig1_2.13.1-4.4 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-1 libgcc-s1_12.2.0-1 libgcrypt20_1.10.1-2 libgd3_2.3.3-6 libgdbm-compat4_1.23-1+b1 libgdbm6_1.23-1+b1 libglib2.0-0_2.73.3-3 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libgts-0.7-5_0.7.6+darcs121130-5 libgvc6_2.42.2-7 libgvpr2_2.42.2-7 libharfbuzz0b_2.7.4-1+b1 libhogweed6_3.8.1-2 libhts3_1.13+ds-2+b1 libhtscodecs2_1.2.2-1 libice6_2:1.0.10-1 libicu71_71.1-3 libidn2-0_2.3.3-1+b1 libip4tc2_1.8.8-1 libisl23_0.25-1 libitm1_12.2.0-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.1.2-1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblab-gamut1_2.42.2-7 libldap-2.5-0_2.5.12+dfsg-2+b1 liblerc4_4.0.0+ds-1 liblocale-gettext-perl_1.07-4+b2 liblsan0_12.2.0-1 libltdl7_2.4.7-4 liblz4-1_1.9.4-1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.49.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpango-1.0-0_1.50.9+ds-1 libpangocairo-1.0-0_1.50.9+ds-1 libpangoft2-1.0-0_1.50.9+ds-1 libpathplan4_2.42.2-7 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-2 libpixman-1-0_0.40.0-1 libpng16-16_1.6.37-5 libpsl5_0.21.0-1.2 libpython3-stdlib_3.10.6-1 libpython3.10-minimal_3.10.6-1 libpython3.10-stdlib_3.10.6-1 libquadmath0_12.2.0-1 libreadline8_8.2~rc2-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-7 libsasl2-modules-db_2.1.28+dfsg-7 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b1 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-1 libsparsehash-dev_2.0.3-2 libsqlite3-0_3.39.2-1 libssh2-1_1.10.0-3+b1 libssl3_3.0.5-2 libstdc++-12-dev_12.2.0-1 libstdc++6_12.2.0-1 libsub-override-perl_0.09-3 libsystemd-shared_251.4-3 libsystemd0_251.4-3 libtasn1-6_4.18.0-4 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan2_12.2.0-1 libubsan1_12.2.0-1 libuchardet0_0.0.7-1 libudev1_251.4-3 libunistring2_1.0-1 libuuid1_2.38.1-1 libwebp7_1.2.2-2+b1 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxaw7_2:1.0.14-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.14+dfsg-1+b1 libxmu6_2:1.1.3-3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1.1 libxt6_1:1.2.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.16-1 login_1:4.11.1+dfsg1-2 lsb-base_11.2 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 po-debconf_1.0.21+nmu1 python3_3.10.6-1 python3-distutils_3.10.6-1 python3-lib2to3_3.10.6-1 python3-minimal_3.10.6-1 python3-pysam_0.17.0+ds-2+b2 python3-ruffus_2.8.4-4 python3.10_3.10.6-1 python3.10-minimal_3.10.6-1 readline-common_8.2~rc2-2 rpcsvc-proto_1.4.2-4 samtools_1.13-4 sed_4.8-1 sensible-utils_0.0.17 systemd_251.4-3 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 ucf_3.0043 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 x11-common_1:7.7+23 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build Thu, 27 Nov 2025 03:21:31 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sga Binary: sga Architecture: any Version: 0.10.15-7 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/jts/sga Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/sga Vcs-Git: https://salsa.debian.org/med-team/sga.git Build-Depends: debhelper-compat (= 13), dh-python, libsparsehash-dev, zlib1g-dev | libz-dev, libbamtools-dev, help2man, samtools , python3 , python3-ruffus , python3-pysam Package-List: sga deb science optional arch=any Checksums-Sha1: 55b540d2f1cae3a44de8da6db8f413826bdb5f14 6569986 sga_0.10.15.orig.tar.gz 4598b0bf58446b932f202a8bfa7e9d9d3bc018de 214356 sga_0.10.15-7.debian.tar.xz Checksums-Sha256: 1b18996e6ec47985bc4889a8cbc3cd4dd3a8c7d385ae9f450bd474e36342558b 6569986 sga_0.10.15.orig.tar.gz 708c923249099329004802eb6fe1b549b6421e5d3cf10d81c624db65e381117f 214356 sga_0.10.15-7.debian.tar.xz Files: 990aed1593f8072650c6366e5cf32519 6569986 sga_0.10.15.orig.tar.gz 420c1f46b48f89950ac7e500402215e8 214356 sga_0.10.15-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmFEoJwACgkQPCZ2P2xn 5uIThw/5AcAmhXJYwdZ93J6fhmzcEOSTkqi8GdH/9Nlt3BCVIZlJR3/6vcttoVUo sKob/Rr78LGESV215LOC13J9soUrZa6giB6aM+wU+hVhD81dCt7zz2bsMSvwopC8 DNmWt3cZta4xDM7MxuBL5cztJZThE8ewwbZ3VQmGHix/aAMOlcK2EsP9iQCpRepF Ovmc4kDe1USc6erpE3cohGVlHfoJy4JXggHjvKqHz4u4YGFLQNpHpT70LH9HSrgh thqrPnnI9I2CjNxF2WSYIFMCD5f1Iq9TWihNi4H6m0keRgZcFE1lKjKuP8WYT9rK GLvaAGaLC1sB0BZ0lLpf18pySxNUzA/EtX6RzBes0UMRG9SkWG2lOFTyZRJjhC/3 Mz3FGKLROVKjTOerTgdhDKCoAPa/VLwXIYZLX/xxHxVelJibqPHRlWuS6xaJkunW OzPueUfUSynrS9kQZ5bM0CIfmhl+9zqWKNIfvwRDqmTh5meaH/oYneMgUIKSJgLa PBU8/Qc+FzpObFe71EIRa/5vs+kUQcvLIoeFqYMoDLd5WFwyFlTTe035u4SKpA7q EOADJZbbLzqBP89tgkWjglsUCVClDBUeyuocQXREI85kW9GkoWnwvKqkZaRNncxO UdqDEwW4NwADMhzii6hdLiJxBiYBhcLkP+ciz4TxX2wUKU6qO1U= =KU9x -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify signature on ./sga_0.10.15-7.dsc since GnuPG is not installed dpkg-source: info: extracting sga in /build/sga-trb58E/sga-0.10.15 dpkg-source: info: unpacking sga_0.10.15.orig.tar.gz dpkg-source: info: unpacking sga_0.10.15-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0002-no-rpath.patch dpkg-source: info: applying 0003-do-not-dist-unsup-script.patch dpkg-source: info: applying 0004-Add-help-to-sga-bam2de.pl.patch dpkg-source: info: applying 0005-Remove-extensions-on-scripts-we-ship.patch dpkg-source: info: applying 0006-remove-google-addsense.patch dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying no_privacy_breach_url.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying no_enforcing_c++98.patch dpkg-source: info: applying gcc9.patch Install fakeroot ---------------- Setup apt archive ----------------- Merged Build-Depends: fakeroot Filtered Build-Depends: fakeroot dpkg-deb: building package 'sbuild-build-depends-fakeroot-dummy' in '/build/sga-trb58E/resolver-w1WoR3/apt_archive/sbuild-build-depends-fakeroot-dummy.deb'. Install fakeroot build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 0.10.15-7+b1 +------------------------------------------------------------------------------+ | Starting Timed Build Commands Thu, 27 Nov 2025 03:21:37 +0000 | +------------------------------------------------------------------------------+ grep -iq "^Rules-Requires-Root:" "/build/sga-trb58E/sga-0.10.15/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/sga-trb58E/sga-0.10.15/debian/control" -------------------------------------------------------------------------------------------------------------------------------------------------------------------- I: Finished running 'grep -iq "^Rules-Requires-Root:" "/build/sga-trb58E/sga-0.10.15/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/sga-trb58E/sga-0.10.15/debian/control"'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1662149288 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package sga dpkg-buildpackage: info: source version 0.10.15-7+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by ppc64el Build Daemon (ppc64el-unicamp-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --with python3 --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --with python3 --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src configure.ac:7: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:7: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:7: the top level configure.ac:24: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:24: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... m4/m4_ax_openmp.m4:70: AX_OPENMP is expanded from... configure.ac:24: the top level configure.ac:12: installing './compile' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' Algorithm/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/sga-trb58E/sga-0.10.15' dh_auto_configure -- --with-bamtools=/usr/ cd src && ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-bamtools=/usr/ checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ranlib... ranlib checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes checking for library containing gzopen... -lz checking for library containing clock_gettime... none required checking for OpenMP flag of C++ compiler... -fopenmp checking for host type... you are not using osx so multi-threading should work. checking for google/sparse_hash_set... yes checking for google/sparse_hash_set... (cached) yes checking for google/sparse_hash_map... yes checking for unordered_map... yes checking for tr1/unordered_map... yes checking for ext/hash_map... yes checking for unordered_set... yes checking for tr1/unordered_set... yes checking for ext/hash_set... yes checking for api/BamReader.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating bin/Makefile config.status: creating Thirdparty/Makefile config.status: creating Util/Makefile config.status: creating SQG/Makefile config.status: creating Bigraph/Makefile config.status: creating Algorithm/Makefile config.status: creating StringGraph/Makefile config.status: creating Concurrency/Makefile config.status: creating SuffixTools/Makefile config.status: creating GraphDiff/Makefile config.status: creating Scaffold/Makefile config.status: creating SGA/Makefile config.status: creating config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/sga-trb58E/sga-0.10.15' dh_auto_build -a -O--sourcedirectory=src cd src && make -j8 make[1]: Entering directory '/build/sga-trb58E/sga-0.10.15/src' make all-recursive make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src' Making all in bin make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/bin' cp -n sga-bam2de.pl sga-bam2de cp -n sga-mergeDriver.pl sga-mergeDriver make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/bin' Making all in Thirdparty make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Thirdparty' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gzstream.o gzstream.C gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -std=gnu99 -O3 -c -o stdaln.o stdaln.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o overlapper.o overlapper.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o multiple_alignment.o multiple_alignment.cpp gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -std=gnu99 -O3 -c -o bcr.o bcr.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o MurmurHash3.o MurmurHash3.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o count_min_sketch.o count_min_sketch.cpp MurmurHash3.cpp: In function ‘void MurmurHash3_x86_32(const void*, int, uint32_t, void*)’: MurmurHash3.cpp:132:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 132 | case 3: k1 ^= tail[2] << 16; | ~~~^~~~~~~~~~~~~~~~ MurmurHash3.cpp:133:3: note: here 133 | case 2: k1 ^= tail[1] << 8; | ^~~~ MurmurHash3.cpp:133:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 133 | case 2: k1 ^= tail[1] << 8; | ~~~^~~~~~~~~~~~~~~ MurmurHash3.cpp:134:3: note: here 134 | case 1: k1 ^= tail[0]; | ^~~~ MurmurHash3.cpp: In function ‘void MurmurHash3_x86_128(const void*, int, uint32_t, void*)’: MurmurHash3.cpp:207:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 207 | case 15: k4 ^= tail[14] << 16; | ~~~^~~~~~~~~~~~~~~~~ MurmurHash3.cpp:208:3: note: here 208 | case 14: k4 ^= tail[13] << 8; | ^~~~ MurmurHash3.cpp:208:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 208 | case 14: k4 ^= tail[13] << 8; | ~~~^~~~~~~~~~~~~~~~ MurmurHash3.cpp:209:3: note: here 209 | case 13: k4 ^= tail[12] << 0; | ^~~~ MurmurHash3.cpp:210:56: warning: this statement may fall through [-Wimplicit-fallthrough=] 210 | k4 *= c4; k4 = ROTL32(k4,18); k4 *= c1; h4 ^= k4; | ~~~^~~~~ MurmurHash3.cpp:212:3: note: here 212 | case 12: k3 ^= tail[11] << 24; | ^~~~ MurmurHash3.cpp:212:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 212 | case 12: k3 ^= tail[11] << 24; | ~~~^~~~~~~~~~~~~~~~~ MurmurHash3.cpp:213:3: note: here 213 | case 11: k3 ^= tail[10] << 16; | ^~~~ MurmurHash3.cpp:213:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 213 | case 11: k3 ^= tail[10] << 16; | ~~~^~~~~~~~~~~~~~~~~ MurmurHash3.cpp:214:3: note: here 214 | case 10: k3 ^= tail[ 9] << 8; | ^~~~ MurmurHash3.cpp:214:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 214 | case 10: k3 ^= tail[ 9] << 8; | ~~~^~~~~~~~~~~~~~~~ MurmurHash3.cpp:215:3: note: here 215 | case 9: k3 ^= tail[ 8] << 0; | ^~~~ MurmurHash3.cpp:216:56: warning: this statement may fall through [-Wimplicit-fallthrough=] 216 | k3 *= c3; k3 = ROTL32(k3,17); k3 *= c4; h3 ^= k3; | ~~~^~~~~ MurmurHash3.cpp:218:3: note: here 218 | case 8: k2 ^= tail[ 7] << 24; | ^~~~ MurmurHash3.cpp:218:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 218 | case 8: k2 ^= tail[ 7] << 24; | ~~~^~~~~~~~~~~~~~~~~ MurmurHash3.cpp:219:3: note: here 219 | case 7: k2 ^= tail[ 6] << 16; | ^~~~ MurmurHash3.cpp:219:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 219 | case 7: k2 ^= tail[ 6] << 16; | ~~~^~~~~~~~~~~~~~~~~ MurmurHash3.cpp:220:3: note: here 220 | case 6: k2 ^= tail[ 5] << 8; | ^~~~ MurmurHash3.cpp:220:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 220 | case 6: k2 ^= tail[ 5] << 8; | ~~~^~~~~~~~~~~~~~~~ MurmurHash3.cpp:221:3: note: here 221 | case 5: k2 ^= tail[ 4] << 0; | ^~~~ MurmurHash3.cpp:222:56: warning: this statement may fall through [-Wimplicit-fallthrough=] 222 | k2 *= c2; k2 = ROTL32(k2,16); k2 *= c3; h2 ^= k2; | ~~~^~~~~ MurmurHash3.cpp:224:3: note: here 224 | case 4: k1 ^= tail[ 3] << 24; | ^~~~ MurmurHash3.cpp:224:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 224 | case 4: k1 ^= tail[ 3] << 24; | ~~~^~~~~~~~~~~~~~~~~ MurmurHash3.cpp:225:3: note: here 225 | case 3: k1 ^= tail[ 2] << 16; | ^~~~ MurmurHash3.cpp:225:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 225 | case 3: k1 ^= tail[ 2] << 16; | ~~~^~~~~~~~~~~~~~~~~ MurmurHash3.cpp:226:3: note: here 226 | case 2: k1 ^= tail[ 1] << 8; | ^~~~ MurmurHash3.cpp:226:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 226 | case 2: k1 ^= tail[ 1] << 8; | ~~~^~~~~~~~~~~~~~~~ MurmurHash3.cpp:227:3: note: here 227 | case 1: k1 ^= tail[ 0] << 0; | ^~~~ MurmurHash3.cpp: In function ‘void MurmurHash3_x64_128(const void*, int, uint32_t, void*)’: MurmurHash3.cpp:296:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 296 | case 15: k2 ^= uint64_t(tail[14]) << 48; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:297:3: note: here 297 | case 14: k2 ^= uint64_t(tail[13]) << 40; | ^~~~ MurmurHash3.cpp:297:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 297 | case 14: k2 ^= uint64_t(tail[13]) << 40; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:298:3: note: here 298 | case 13: k2 ^= uint64_t(tail[12]) << 32; | ^~~~ MurmurHash3.cpp:298:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 298 | case 13: k2 ^= uint64_t(tail[12]) << 32; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:299:3: note: here 299 | case 12: k2 ^= uint64_t(tail[11]) << 24; | ^~~~ MurmurHash3.cpp:299:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 299 | case 12: k2 ^= uint64_t(tail[11]) << 24; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:300:3: note: here 300 | case 11: k2 ^= uint64_t(tail[10]) << 16; | ^~~~ MurmurHash3.cpp:300:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 300 | case 11: k2 ^= uint64_t(tail[10]) << 16; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:301:3: note: here 301 | case 10: k2 ^= uint64_t(tail[ 9]) << 8; | ^~~~ MurmurHash3.cpp:301:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 301 | case 10: k2 ^= uint64_t(tail[ 9]) << 8; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:302:3: note: here 302 | case 9: k2 ^= uint64_t(tail[ 8]) << 0; | ^~~~ MurmurHash3.cpp:303:56: warning: this statement may fall through [-Wimplicit-fallthrough=] 303 | k2 *= c2; k2 = ROTL64(k2,33); k2 *= c1; h2 ^= k2; | ~~~^~~~~ MurmurHash3.cpp:305:3: note: here 305 | case 8: k1 ^= uint64_t(tail[ 7]) << 56; | ^~~~ MurmurHash3.cpp:305:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 305 | case 8: k1 ^= uint64_t(tail[ 7]) << 56; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:306:3: note: here 306 | case 7: k1 ^= uint64_t(tail[ 6]) << 48; | ^~~~ MurmurHash3.cpp:306:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 306 | case 7: k1 ^= uint64_t(tail[ 6]) << 48; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:307:3: note: here 307 | case 6: k1 ^= uint64_t(tail[ 5]) << 40; | ^~~~ MurmurHash3.cpp:307:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 307 | case 6: k1 ^= uint64_t(tail[ 5]) << 40; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:308:3: note: here 308 | case 5: k1 ^= uint64_t(tail[ 4]) << 32; | ^~~~ MurmurHash3.cpp:308:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 308 | case 5: k1 ^= uint64_t(tail[ 4]) << 32; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:309:3: note: here 309 | case 4: k1 ^= uint64_t(tail[ 3]) << 24; | ^~~~ MurmurHash3.cpp:309:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 309 | case 4: k1 ^= uint64_t(tail[ 3]) << 24; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:310:3: note: here 310 | case 3: k1 ^= uint64_t(tail[ 2]) << 16; | ^~~~ MurmurHash3.cpp:310:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | case 3: k1 ^= uint64_t(tail[ 2]) << 16; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:311:3: note: here 311 | case 2: k1 ^= uint64_t(tail[ 1]) << 8; | ^~~~ MurmurHash3.cpp:311:15: warning: this statement may fall through [-Wimplicit-fallthrough=] 311 | case 2: k1 ^= uint64_t(tail[ 1]) << 8; | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ MurmurHash3.cpp:312:3: note: here 312 | case 1: k1 ^= uint64_t(tail[ 0]) << 0; | ^~~~ bcr.c: In function ‘ld_restore’: bcr.c:183:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 183 | fread(&ld->max, sizeof(int), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bcr.c:186:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 186 | fread(&x, sizeof(int), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bcr.c:189:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 189 | fread(ld->a[i], 8, x, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~ overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::gap_s1_start’ [-Wmissing-field-initializers] 37 | OverlapperParams default_params = { 2, -6, -3, -2, ALT_OVERLAP }; | ^ overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::gap_s1_end’ [-Wmissing-field-initializers] overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::gap_s2_start’ [-Wmissing-field-initializers] overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::gap_s2_end’ [-Wmissing-field-initializers] overlapper.cpp:37:64: warning: missing initializer for member ‘OverlapperParams::use_m_ops’ [-Wmissing-field-initializers] overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::gap_s1_start’ [-Wmissing-field-initializers] 38 | OverlapperParams ungapped_params = { 2, -10000, -3, -2, ALT_OVERLAP }; | ^ overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::gap_s1_end’ [-Wmissing-field-initializers] overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::gap_s2_start’ [-Wmissing-field-initializers] overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::gap_s2_end’ [-Wmissing-field-initializers] overlapper.cpp:38:69: warning: missing initializer for member ‘OverlapperParams::use_m_ops’ [-Wmissing-field-initializers] stdaln.c: In function ‘aln_local_core’: stdaln.c:756:17: warning: ‘free’ called on pointer ‘*(int **)((char *)(void *) ivtmp.560_622)’ with nonzero offset 4 [-Wfree-nonheap-object] 756 | free(s_array[i]); | ^~~~~~~~~~~~~~~~ rm -f libthirdparty.a ar cru libthirdparty.a gzstream.o stdaln.o overlapper.o multiple_alignment.o bcr.o MurmurHash3.o count_min_sketch.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libthirdparty.a make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Thirdparty' Making all in Util make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Util' g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Util.o `test -f 'Util.cpp' || echo './'`Util.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Alphabet.o `test -f 'Alphabet.cpp' || echo './'`Alphabet.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Contig.o `test -f 'Contig.cpp' || echo './'`Contig.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-ReadTable.o `test -f 'ReadTable.cpp' || echo './'`ReadTable.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-ReadInfoTable.o `test -f 'ReadInfoTable.cpp' || echo './'`ReadInfoTable.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-SeqReader.o `test -f 'SeqReader.cpp' || echo './'`SeqReader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-DNAString.o `test -f 'DNAString.cpp' || echo './'`DNAString.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Match.o `test -f 'Match.cpp' || echo './'`Match.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Pileup.o `test -f 'Pileup.cpp' || echo './'`Pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-BitChar.o `test -f 'BitChar.cpp' || echo './'`BitChar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Interval.o `test -f 'Interval.cpp' || echo './'`Interval.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-SeqCoord.o `test -f 'SeqCoord.cpp' || echo './'`SeqCoord.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-MultiOverlap.o `test -f 'MultiOverlap.cpp' || echo './'`MultiOverlap.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-QualityVector.o `test -f 'QualityVector.cpp' || echo './'`QualityVector.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-SGAStats.o `test -f 'SGAStats.cpp' || echo './'`SGAStats.cpp In file included from Pileup.h:12, from Pileup.cpp:10: Pileup.cpp: In member function ‘DNADouble Pileup::calculateSimpleAlphaProb() const’: Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \ | ^~ Pileup.cpp:46:5: note: in expansion of macro ‘WARN_ONCE’ 46 | WARN_ONCE("Fix Pileup::calculateSimpleDNADouble numerical stability"); | ^~~~~~~~~ Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 33 | printf("WARNING: [%s]\n", (x)); _warn_once = false; | ^~~~~~~~~~ Pileup.cpp:46:5: note: in expansion of macro ‘WARN_ONCE’ 46 | WARN_ONCE("Fix Pileup::calculateSimpleDNADouble numerical stability"); | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-Quality.o `test -f 'Quality.cpp' || echo './'`Quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-PrimerScreen.o `test -f 'PrimerScreen.cpp' || echo './'`PrimerScreen.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-BitVector.o `test -f 'BitVector.cpp' || echo './'`BitVector.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-CorrectionThresholds.o `test -f 'CorrectionThresholds.cpp' || echo './'`CorrectionThresholds.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-KmerDistribution.o `test -f 'KmerDistribution.cpp' || echo './'`KmerDistribution.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-ClusterReader.o `test -f 'ClusterReader.cpp' || echo './'`ClusterReader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-MultiAlignment.o `test -f 'MultiAlignment.cpp' || echo './'`MultiAlignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-StdAlnTools.o `test -f 'StdAlnTools.cpp' || echo './'`StdAlnTools.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-VCFUtil.o `test -f 'VCFUtil.cpp' || echo './'`VCFUtil.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-QualityTable.o `test -f 'QualityTable.cpp' || echo './'`QualityTable.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-BloomFilter.o `test -f 'BloomFilter.cpp' || echo './'`BloomFilter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libutil_a-VariantIndex.o `test -f 'VariantIndex.cpp' || echo './'`VariantIndex.cpp rm -f libutil.a ar cru libutil.a libutil_a-Util.o libutil_a-Alphabet.o libutil_a-Contig.o libutil_a-ReadTable.o libutil_a-ReadInfoTable.o libutil_a-SeqReader.o libutil_a-DNAString.o libutil_a-Match.o libutil_a-Pileup.o libutil_a-BitChar.o libutil_a-Interval.o libutil_a-SeqCoord.o libutil_a-MultiOverlap.o libutil_a-QualityVector.o libutil_a-SGAStats.o libutil_a-Quality.o libutil_a-PrimerScreen.o libutil_a-BitVector.o libutil_a-CorrectionThresholds.o libutil_a-KmerDistribution.o libutil_a-ClusterReader.o libutil_a-MultiAlignment.o libutil_a-StdAlnTools.o libutil_a-VCFUtil.o libutil_a-QualityTable.o libutil_a-BloomFilter.o libutil_a-VariantIndex.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libutil.a make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Util' Making all in SQG make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SQG' g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I../Util -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsqg_a-SQG.o `test -f 'SQG.cpp' || echo './'`SQG.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -I../Util -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsqg_a-ASQG.o `test -f 'ASQG.cpp' || echo './'`ASQG.cpp rm -f libsqg.a ar cru libsqg.a libsqg_a-SQG.o libsqg_a-ASQG.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libsqg.a make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SQG' Making all in Bigraph make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Bigraph' g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbigraph_a-Bigraph.o `test -f 'Bigraph.cpp' || echo './'`Bigraph.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbigraph_a-Vertex.o `test -f 'Vertex.cpp' || echo './'`Vertex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbigraph_a-Edge.o `test -f 'Edge.cpp' || echo './'`Edge.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbigraph_a-EdgeDesc.o `test -f 'EdgeDesc.cpp' || echo './'`EdgeDesc.cpp In file included from ../Util/EncodedString.h:22, from Vertex.h:23, from Vertex.cpp:9: ../Util/EncodedString.h: In instantiation of ‘void EncodedString::_copy(const EncodedString&) [with Codec = DNACodec]’: ../Util/EncodedString.h:43:18: required from ‘EncodedString::EncodedString(const EncodedString&) [with Codec = DNACodec]’ /usr/include/c++/12/bits/move.h:204:11: required from ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = EncodedString; _Require<__not_<__is_tuple_like<_Tp> >, is_move_constructible<_Tp>, is_move_assignable<_Tp> > = void]’ Vertex.cpp:46:18: required from here ../Util/EncodedString.h:236:31: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 236 | assert(m_capacity = other.m_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ rm -f libbigraph.a ar cru libbigraph.a libbigraph_a-Bigraph.o libbigraph_a-Vertex.o libbigraph_a-Edge.o libbigraph_a-EdgeDesc.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libbigraph.a make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Bigraph' Making all in Algorithm make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Algorithm' g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-OverlapAlgorithm.o `test -f 'OverlapAlgorithm.cpp' || echo './'`OverlapAlgorithm.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-SearchSeed.o `test -f 'SearchSeed.cpp' || echo './'`SearchSeed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-OverlapBlock.o `test -f 'OverlapBlock.cpp' || echo './'`OverlapBlock.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-SearchHistory.o `test -f 'SearchHistory.cpp' || echo './'`SearchHistory.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ErrorCorrectProcess.o `test -f 'ErrorCorrectProcess.cpp' || echo './'`ErrorCorrectProcess.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-QCProcess.o `test -f 'QCProcess.cpp' || echo './'`QCProcess.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-OverlapTools.o `test -f 'OverlapTools.cpp' || echo './'`OverlapTools.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-DPAlignment.o `test -f 'DPAlignment.cpp' || echo './'`DPAlignment.cpp In file included from SearchHistory.h:12, from OverlapBlock.h:15, from OverlapBlock.cpp:11: OverlapBlock.cpp: In member function ‘std::string OverlapBlock::getFullString(const std::string&) const’: ../Util/Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \ | ^~ OverlapBlock.cpp:88:9: note: in expansion of macro ‘WARN_ONCE’ 88 | WARN_ONCE("getFullString() called on block with no history") | ^~~~~~~~~ ../Util/Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 33 | printf("WARNING: [%s]\n", (x)); _warn_once = false; | ^~~~~~~~~~ OverlapBlock.cpp:88:9: note: in expansion of macro ‘WARN_ONCE’ 88 | WARN_ONCE("getFullString() called on block with no history") | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ConnectProcess.o `test -f 'ConnectProcess.cpp' || echo './'`ConnectProcess.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-StringGraphGenerator.o `test -f 'StringGraphGenerator.cpp' || echo './'`StringGraphGenerator.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-FMMergeProcess.o `test -f 'FMMergeProcess.cpp' || echo './'`FMMergeProcess.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-StatsProcess.o `test -f 'StatsProcess.cpp' || echo './'`StatsProcess.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ClusterProcess.o `test -f 'ClusterProcess.cpp' || echo './'`ClusterProcess.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ReadCluster.o `test -f 'ReadCluster.cpp' || echo './'`ReadCluster.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-LRAlignment.o `test -f 'LRAlignment.cpp' || echo './'`LRAlignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-StringThreader.o `test -f 'StringThreader.cpp' || echo './'`StringThreader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-ExtensionDP.o `test -f 'ExtensionDP.cpp' || echo './'`ExtensionDP.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-HaplotypeBuilder.o `test -f 'HaplotypeBuilder.cpp' || echo './'`HaplotypeBuilder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-GapFillProcess.o `test -f 'GapFillProcess.cpp' || echo './'`GapFillProcess.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-VariationBuilderCommon.o `test -f 'VariationBuilderCommon.cpp' || echo './'`VariationBuilderCommon.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../GraphDiff -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libalgorithm_a-KmerOverlaps.o `test -f 'KmerOverlaps.cpp' || echo './'`KmerOverlaps.cpp In file included from ReadCluster.cpp:10: In constructor ‘ClusterNode::ClusterNode(ClusterNode&&)’, inlined from ‘ClusterNode ReadCluster::addSeed(const std::string&, bool)’ at ReadCluster.cpp:60:20: ReadCluster.h:17:8: warning: ‘emptyNode.ClusterNode::fwdCanonicalID’ may be used uninitialized [-Wmaybe-uninitialized] 17 | struct ClusterNode | ^~~~~~~~~~~ ReadCluster.cpp: In member function ‘ClusterNode ReadCluster::addSeed(const std::string&, bool)’: ReadCluster.cpp:55:25: note: ‘emptyNode.ClusterNode::fwdCanonicalID’ was declared here 55 | ClusterNode emptyNode; | ^~~~~~~~~ In constructor ‘ClusterNode::ClusterNode(ClusterNode&&)’, inlined from ‘ClusterNode ReadCluster::addSeed(const std::string&, bool)’ at ReadCluster.cpp:60:20: ReadCluster.h:17:8: warning: ‘emptyNode.ClusterNode::isReverseInterval’ may be used uninitialized [-Wmaybe-uninitialized] 17 | struct ClusterNode | ^~~~~~~~~~~ ReadCluster.cpp: In member function ‘ClusterNode ReadCluster::addSeed(const std::string&, bool)’: ReadCluster.cpp:55:25: note: ‘emptyNode.ClusterNode::isReverseInterval’ was declared here 55 | ClusterNode emptyNode; | ^~~~~~~~~ rm -f libalgorithm.a ar cru libalgorithm.a libalgorithm_a-OverlapAlgorithm.o libalgorithm_a-SearchSeed.o libalgorithm_a-OverlapBlock.o libalgorithm_a-SearchHistory.o libalgorithm_a-ErrorCorrectProcess.o libalgorithm_a-QCProcess.o libalgorithm_a-OverlapTools.o libalgorithm_a-DPAlignment.o libalgorithm_a-ConnectProcess.o libalgorithm_a-StringGraphGenerator.o libalgorithm_a-FMMergeProcess.o libalgorithm_a-StatsProcess.o libalgorithm_a-ClusterProcess.o libalgorithm_a-ReadCluster.o libalgorithm_a-LRAlignment.o libalgorithm_a-StringThreader.o libalgorithm_a-ExtensionDP.o libalgorithm_a-HaplotypeBuilder.o libalgorithm_a-GapFillProcess.o libalgorithm_a-VariationBuilderCommon.o libalgorithm_a-KmerOverlaps.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libalgorithm.a make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Algorithm' Making all in StringGraph make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/StringGraph' g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGUtil.o `test -f 'SGUtil.cpp' || echo './'`SGUtil.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGAlgorithms.o `test -f 'SGAlgorithms.cpp' || echo './'`SGAlgorithms.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGVisitors.o `test -f 'SGVisitors.cpp' || echo './'`SGVisitors.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-CompleteOverlapSet.o `test -f 'CompleteOverlapSet.cpp' || echo './'`CompleteOverlapSet.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-RemovalAlgorithm.o `test -f 'RemovalAlgorithm.cpp' || echo './'`RemovalAlgorithm.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGSearch.o `test -f 'SGSearch.cpp' || echo './'`SGSearch.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../Thirdparty -I../Algorithm -I../SQG -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libstringgraph_a-SGWalk.o `test -f 'SGWalk.cpp' || echo './'`SGWalk.cpp In file included from ../Bigraph/GraphCommon.h:14, from ../Bigraph/Bigraph.h:16, from SGAlgorithms.h:13, from SGAlgorithms.cpp:9: SGAlgorithms.cpp: In function ‘Edge* SGAlgorithms::createEdgesFromOverlap(StringGraph*, const Overlap&, bool, size_t)’: ../Util/Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \ | ^~ SGAlgorithms.cpp:60:9: note: in expansion of macro ‘WARN_ONCE’ 60 | WARN_ONCE("Edge limit reached for vertex when loading graph"); | ^~~~~~~~~ ../Util/Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 33 | printf("WARNING: [%s]\n", (x)); _warn_once = false; | ^~~~~~~~~~ SGAlgorithms.cpp:60:9: note: in expansion of macro ‘WARN_ONCE’ 60 | WARN_ONCE("Edge limit reached for vertex when loading graph"); | ^~~~~~~~~ rm -f libstringgraph.a ar cru libstringgraph.a libstringgraph_a-SGUtil.o libstringgraph_a-SGAlgorithms.o libstringgraph_a-SGVisitors.o libstringgraph_a-CompleteOverlapSet.o libstringgraph_a-RemovalAlgorithm.o libstringgraph_a-SGSearch.o libstringgraph_a-SGWalk.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libstringgraph.a make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/StringGraph' Making all in Concurrency make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Concurrency' g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../SuffixTools -I../Thirdparty -I../Algorithm -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libconcurrency_a-OverlapProcess.o `test -f 'OverlapProcess.cpp' || echo './'`OverlapProcess.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../SuffixTools -I../Thirdparty -I../Algorithm -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libconcurrency_a-RmdupProcess.o `test -f 'RmdupProcess.cpp' || echo './'`RmdupProcess.cpp rm -f libconcurrency.a ar cru libconcurrency.a libconcurrency_a-OverlapProcess.o libconcurrency_a-RmdupProcess.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libconcurrency.a make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Concurrency' Making all in SuffixTools make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SuffixTools' g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-STCommon.o `test -f 'STCommon.cpp' || echo './'`STCommon.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-Occurrence.o `test -f 'Occurrence.cpp' || echo './'`Occurrence.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SuffixArray.o `test -f 'SuffixArray.cpp' || echo './'`SuffixArray.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SuffixCompare.o `test -f 'SuffixCompare.cpp' || echo './'`SuffixCompare.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-InverseSuffixArray.o `test -f 'InverseSuffixArray.cpp' || echo './'`InverseSuffixArray.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SACAInducedCopying.o `test -f 'SACAInducedCopying.cpp' || echo './'`SACAInducedCopying.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTAlgorithms.o `test -f 'BWTAlgorithms.cpp' || echo './'`BWTAlgorithms.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTDiskConstruction.o `test -f 'BWTDiskConstruction.cpp' || echo './'`BWTDiskConstruction.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTReader.o `test -f 'BWTReader.cpp' || echo './'`BWTReader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTWriter.o `test -f 'BWTWriter.cpp' || echo './'`BWTWriter.cpp In file included from ../Util/EncodedString.h:22, from Occurrence.h:13, from RLBWT.h:13, from BWT.h:18, from BWTDiskConstruction.h:19, from BWTDiskConstruction.cpp:12: ../Util/EncodedString.h: In instantiation of ‘void EncodedString::_copy(const EncodedString&) [with Codec = DNACodec]’: ../Util/EncodedString.h:43:18: required from ‘EncodedString::EncodedString(const EncodedString&) [with Codec = DNACodec]’ /usr/include/c++/12/bits/new_allocator.h:175:4: required from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = EncodedString; _Args = {EncodedString}; _Tp = EncodedString]’ /usr/include/c++/12/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = EncodedString; _Args = {EncodedString}; _Tp = EncodedString; allocator_type = std::allocator >]’ /usr/include/c++/12/bits/vector.tcc:117:30: required from ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {EncodedString}; _Tp = EncodedString; _Alloc = std::allocator >; reference = EncodedString&]’ /usr/include/c++/12/bits/stl_vector.h:1294:21: required from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = EncodedString; _Alloc = std::allocator >; value_type = EncodedString]’ BWTDiskConstruction.cpp:252:36: required from here ../Util/EncodedString.h:236:31: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 236 | assert(m_capacity = other.m_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SAReader.o `test -f 'SAReader.cpp' || echo './'`SAReader.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SAWriter.o `test -f 'SAWriter.cpp' || echo './'`SAWriter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-GapArray.o `test -f 'GapArray.cpp' || echo './'`GapArray.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-RankProcess.o `test -f 'RankProcess.cpp' || echo './'`RankProcess.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SBWT.o `test -f 'SBWT.cpp' || echo './'`SBWT.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-RLBWT.o `test -f 'RLBWT.cpp' || echo './'`RLBWT.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTWriterBinary.o `test -f 'BWTWriterBinary.cpp' || echo './'`BWTWriterBinary.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTReaderBinary.o `test -f 'BWTReaderBinary.cpp' || echo './'`BWTReaderBinary.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTWriterAscii.o `test -f 'BWTWriterAscii.cpp' || echo './'`BWTWriterAscii.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTReaderAscii.o `test -f 'BWTReaderAscii.cpp' || echo './'`BWTReaderAscii.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTIntervalCache.o `test -f 'BWTIntervalCache.cpp' || echo './'`BWTIntervalCache.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-QuickBWT.o `test -f 'QuickBWT.cpp' || echo './'`QuickBWT.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-SampledSuffixArray.o `test -f 'SampledSuffixArray.cpp' || echo './'`SampledSuffixArray.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTCABauerCoxRosone.o `test -f 'BWTCABauerCoxRosone.cpp' || echo './'`BWTCABauerCoxRosone.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-BWTCARopebwt.o `test -f 'BWTCARopebwt.cpp' || echo './'`BWTCARopebwt.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsuffixtools_a-PopulationIndex.o `test -f 'PopulationIndex.cpp' || echo './'`PopulationIndex.cpp rm -f libsuffixtools.a ar cru libsuffixtools.a libsuffixtools_a-STCommon.o libsuffixtools_a-Occurrence.o libsuffixtools_a-SuffixArray.o libsuffixtools_a-SuffixCompare.o libsuffixtools_a-InverseSuffixArray.o libsuffixtools_a-SACAInducedCopying.o libsuffixtools_a-BWTAlgorithms.o libsuffixtools_a-BWTDiskConstruction.o libsuffixtools_a-BWTReader.o libsuffixtools_a-BWTWriter.o libsuffixtools_a-SAReader.o libsuffixtools_a-SAWriter.o libsuffixtools_a-GapArray.o libsuffixtools_a-RankProcess.o libsuffixtools_a-SBWT.o libsuffixtools_a-RLBWT.o libsuffixtools_a-BWTReader.o libsuffixtools_a-BWTWriter.o libsuffixtools_a-BWTWriterBinary.o libsuffixtools_a-BWTReaderBinary.o libsuffixtools_a-BWTWriterAscii.o libsuffixtools_a-BWTReaderAscii.o libsuffixtools_a-BWTIntervalCache.o libsuffixtools_a-QuickBWT.o libsuffixtools_a-SampledSuffixArray.o libsuffixtools_a-BWTCABauerCoxRosone.o libsuffixtools_a-BWTCARopebwt.o libsuffixtools_a-PopulationIndex.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libsuffixtools.a make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SuffixTools' Making all in Scaffold make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Scaffold' g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldVertex.o `test -f 'ScaffoldVertex.cpp' || echo './'`ScaffoldVertex.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldEdge.o `test -f 'ScaffoldEdge.cpp' || echo './'`ScaffoldEdge.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldGraph.o `test -f 'ScaffoldGraph.cpp' || echo './'`ScaffoldGraph.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldVisitors.o `test -f 'ScaffoldVisitors.cpp' || echo './'`ScaffoldVisitors.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldLink.o `test -f 'ScaffoldLink.cpp' || echo './'`ScaffoldLink.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldRecord.o `test -f 'ScaffoldRecord.cpp' || echo './'`ScaffoldRecord.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldGroup.o `test -f 'ScaffoldGroup.cpp' || echo './'`ScaffoldGroup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldSearch.o `test -f 'ScaffoldSearch.cpp' || echo './'`ScaffoldSearch.cpp In file included from ../Bigraph/GraphCommon.h:14, from ../Bigraph/Bigraph.h:16, from ScaffoldVertex.h:12, from ScaffoldGroup.h:13, from ScaffoldGroup.cpp:10: ScaffoldGroup.cpp: In member function ‘void ScaffoldGroup::getSecondaryLinks()’: ../Util/Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \ | ^~ ScaffoldGroup.cpp:279:13: note: in expansion of macro ‘WARN_ONCE’ 279 | WARN_ONCE("Recalculate xzDir"); | ^~~~~~~~~ ../Util/Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 33 | printf("WARNING: [%s]\n", (x)); _warn_once = false; | ^~~~~~~~~~ ScaffoldGroup.cpp:279:13: note: in expansion of macro ‘WARN_ONCE’ 279 | WARN_ONCE("Recalculate xzDir"); | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldWalk.o `test -f 'ScaffoldWalk.cpp' || echo './'`ScaffoldWalk.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldAlgorithms.o `test -f 'ScaffoldAlgorithms.cpp' || echo './'`ScaffoldAlgorithms.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Thirdparty -I../Bigraph -I../SQG -I../Algorithm -I../StringGraph -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libscaffold_a-ScaffoldSequenceCollection.o `test -f 'ScaffoldSequenceCollection.cpp' || echo './'`ScaffoldSequenceCollection.cpp rm -f libscaffold.a ar cru libscaffold.a libscaffold_a-ScaffoldVertex.o libscaffold_a-ScaffoldEdge.o libscaffold_a-ScaffoldGraph.o libscaffold_a-ScaffoldVisitors.o libscaffold_a-ScaffoldLink.o libscaffold_a-ScaffoldRecord.o libscaffold_a-ScaffoldGroup.o libscaffold_a-ScaffoldSearch.o libscaffold_a-ScaffoldWalk.o libscaffold_a-ScaffoldAlgorithms.o libscaffold_a-ScaffoldSequenceCollection.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libscaffold.a make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Scaffold' Making all in GraphDiff make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/GraphDiff' g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-DindelUtil.o `test -f 'DindelUtil.cpp' || echo './'`DindelUtil.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-DindelRealignWindow.o `test -f 'DindelRealignWindow.cpp' || echo './'`DindelRealignWindow.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-DindelHMM.o `test -f 'DindelHMM.cpp' || echo './'`DindelHMM.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-OverlapHaplotypeBuilder.o `test -f 'OverlapHaplotypeBuilder.cpp' || echo './'`OverlapHaplotypeBuilder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-StringHaplotypeBuilder.o `test -f 'StringHaplotypeBuilder.cpp' || echo './'`StringHaplotypeBuilder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-DeBruijnHaplotypeBuilder.o `test -f 'DeBruijnHaplotypeBuilder.cpp' || echo './'`DeBruijnHaplotypeBuilder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-PairedDeBruijnHaplotypeBuilder.o `test -f 'PairedDeBruijnHaplotypeBuilder.cpp' || echo './'`PairedDeBruijnHaplotypeBuilder.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Util -I../StringGraph -I../SQG -I../SuffixTools -I../Thirdparty -I../Algorithm -I../Concurrency -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libgraphdiff_a-HapgenUtil.o `test -f 'HapgenUtil.cpp' || echo './'`HapgenUtil.cpp DindelUtil.cpp: In function ‘DindelReturnCode DindelUtil::runDindelPairMatePair(const std::string&, const StringVector&, const StringVector&, const GraphCompareParameters&, std::ostream&, std::ostream&, std::ostream&, DindelReadReferenceAlignmentVector*)’: DindelUtil.cpp:65:10: warning: variable ‘has_complex_variant’ set but not used [-Wunused-but-set-variable] 65 | bool has_complex_variant = false; | ^~~~~~~~~~~~~~~~~~~ DeBruijnHaplotypeBuilder.cpp: In member function ‘Vertex* DeBruijnHaplotypeBuilder::extendUnambiguously(Vertex*, StringGraph*, EdgeDir, size_t, size_t)’: DeBruijnHaplotypeBuilder.cpp:227:16: warning: variable ‘ext_count’ set but not used [-Wunused-but-set-variable] 227 | size_t ext_count = 0; | ^~~~~~~~~ DindelRealignWindow.cpp: In member function ‘void DindelHaplotype::write(std::ostream&) const’: DindelRealignWindow.cpp:762:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 762 | for (size_t x=0; x::const_iterator i=it->second.begin();i!=it->second.end();i++) std::cout << " " << *i; std::cout << std::endl; | ^~~ DindelRealignWindow.cpp:1037:115: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1037 | for (std::list::const_iterator i=it->second.begin();i!=it->second.end();i++) std::cout << " " << *i; std::cout << std::endl; | ^~~ DindelRealignWindow.cpp: In member function ‘void DindelRealignWindow::computeHaplotypePairLikelihoods(std::vector&, std::unordered_map, std::__cxx11::list >&, const std::vector >&)’: DindelRealignWindow.cpp:2589:12: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2589 | for (int h1=0;h1&, const std::vector >&, double, int)’: DindelRealignWindow.cpp:2743:17: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2743 | for (size_t x=0;x&, const std::vector >&, double, int)’: DindelRealignWindow.cpp:2906:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2906 | for (size_t x=0;x::_copy(const EncodedString&) [with Codec = DNACodec]’: ../Util/EncodedString.h:43:18: required from ‘EncodedString::EncodedString(const EncodedString&) [with Codec = DNACodec]’ /usr/include/c++/12/bits/new_allocator.h:175:4: required from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = EncodedString; _Args = {EncodedString}; _Tp = EncodedString]’ /usr/include/c++/12/bits/alloc_traits.h:516:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = EncodedString; _Args = {EncodedString}; _Tp = EncodedString; allocator_type = std::allocator >]’ /usr/include/c++/12/bits/vector.tcc:117:30: required from ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {EncodedString}; _Tp = EncodedString; _Alloc = std::allocator >; reference = EncodedString&]’ /usr/include/c++/12/bits/stl_vector.h:1294:21: required from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = EncodedString; _Alloc = std::allocator >; value_type = EncodedString]’ index.cpp:130:27: required from here ../Util/EncodedString.h:236:31: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 236 | assert(m_capacity = other.m_capacity); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-merge.o `test -f 'merge.cpp' || echo './'`merge.cpp assemble.cpp: In function ‘void parseAssembleOptions(int, char**)’: assemble.cpp:234:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 234 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ oview.cpp: In function ‘void parseOviewOptions(int, char**)’: oview.cpp:202:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 202 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-subgraph.o `test -f 'subgraph.cpp' || echo './'`subgraph.cpp rmdup.cpp: In function ‘void parseRmdupOptions(int, char**)’: rmdup.cpp:348:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 348 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ correct.cpp: In function ‘void parseCorrectOptions(int, char**)’: correct.cpp:330:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 330 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ merge.cpp: In function ‘void parseMergeOptions(int, char**)’: merge.cpp:173:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 173 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-scaffold.o `test -f 'scaffold.cpp' || echo './'`scaffold.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-scaffold2fasta.o `test -f 'scaffold2fasta.cpp' || echo './'`scaffold2fasta.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-connect.o `test -f 'connect.cpp' || echo './'`connect.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-walk.o `test -f 'walk.cpp' || echo './'`walk.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-filter.o `test -f 'filter.cpp' || echo './'`filter.cpp subgraph.cpp: In function ‘void parseSubgraphOptions(int, char**)’: subgraph.cpp:169:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 169 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-kmer-count.o `test -f 'kmer-count.cpp' || echo './'`kmer-count.cpp scaffold2fasta.cpp: In function ‘void parseScaffold2fastaOptions(int, char**)’: scaffold2fasta.cpp:196:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 196 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ scaffold.cpp: In function ‘void parseScaffoldOptions(int, char**)’: scaffold.cpp:189:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 189 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-stats.o `test -f 'stats.cpp' || echo './'`stats.cpp filter.cpp: In function ‘void parseFilterOptions(int, char**)’: filter.cpp:217:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 217 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ walk.cpp: In function ‘void parseWalkOptions(int, char**)’: walk.cpp:323:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 323 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from connect.cpp:15: connect.cpp: In function ‘int connectMain(int, char**)’: ../Util/Util.h:32:53: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 32 | #define WARN_ONCE(x) static bool _warn_once = true; if(_warn_once) \ | ^~ connect.cpp:297:17: note: in expansion of macro ‘WARN_ONCE’ 297 | WARN_ONCE("check orientation of result"); | ^~~~~~~~~ ../Util/Util.h:33:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 33 | printf("WARNING: [%s]\n", (x)); _warn_once = false; | ^~~~~~~~~~ connect.cpp:297:17: note: in expansion of macro ‘WARN_ONCE’ 297 | WARN_ONCE("check orientation of result"); | ^~~~~~~~~ connect.cpp: In function ‘void parseConnectOptions(int, char**)’: connect.cpp:465:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 465 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-fm-merge.o `test -f 'fm-merge.cpp' || echo './'`fm-merge.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-gmap.o `test -f 'gmap.cpp' || echo './'`gmap.cpp kmer-count.cpp: In function ‘void parseKmerCountOptions(int, char**)’: kmer-count.cpp:63:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 63 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-filterBAM.o `test -f 'filterBAM.cpp' || echo './'`filterBAM.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-cluster.o `test -f 'cluster.cpp' || echo './'`cluster.cpp stats.cpp: In function ‘void parseStatsOptions(int, char**)’: stats.cpp:171:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 171 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-gen-ssa.o `test -f 'gen-ssa.cpp' || echo './'`gen-ssa.cpp gmap.cpp: In function ‘void parseGmapOptions(int, char**)’: gmap.cpp:303:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 303 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-bwt2fa.o `test -f 'bwt2fa.cpp' || echo './'`bwt2fa.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-graph-diff.o `test -f 'graph-diff.cpp' || echo './'`graph-diff.cpp fm-merge.cpp: In function ‘void parseFMMergeOptions(int, char**)’: fm-merge.cpp:164:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 164 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ gen-ssa.cpp: In function ‘void parseGenSSAOptions(int, char**)’: gen-ssa.cpp:108:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 108 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ filterBAM.cpp: In function ‘void parseFilterBAMOptions(int, char**)’: filterBAM.cpp:438:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 438 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-graph-concordance.o `test -f 'graph-concordance.cpp' || echo './'`graph-concordance.cpp cluster.cpp: In function ‘void parseClusterOptions(int, char**)’: cluster.cpp:292:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 292 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-gapfill.o `test -f 'gapfill.cpp' || echo './'`gapfill.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-preqc.o `test -f 'preqc.cpp' || echo './'`preqc.cpp bwt2fa.cpp: In function ‘void parseBWT2FAOptions(int, char**)’: bwt2fa.cpp:96:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 96 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-overlap-long.o `test -f 'overlap-long.cpp' || echo './'`overlap-long.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-variant-detectability.o `test -f 'variant-detectability.cpp' || echo './'`variant-detectability.cpp graph-concordance.cpp: In function ‘std::string reconstructHaplotype(const VCFRecord&, VariantRecordVector, const ReadTable&, const BWTIndexSet&, size_t)’: graph-concordance.cpp:214:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 214 | if(end > chr.seq.length()) | ~~~~^~~~~~~~~~~~~~~~~~ graph-concordance.cpp: In function ‘void parseGraphConcordanceOptions(int, char**)’: graph-concordance.cpp:437:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 437 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-rewrite-evidence-bam.o `test -f 'rewrite-evidence-bam.cpp' || echo './'`rewrite-evidence-bam.cpp graph-diff.cpp: In function ‘void parseGraphDiffOptions(int, char**)’: graph-diff.cpp:493:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 493 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ gapfill.cpp: In function ‘void parseGapFillOptions(int, char**)’: gapfill.cpp:148:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 148 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from ../Thirdparty/rapidjson/reader.h:7, from ../Thirdparty/rapidjson/document.h:4, from preqc.cpp:27: ../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF8::TakeBOM(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef170’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:170:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 170 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static rapidjson::UTF8::Ch rapidjson::UTF8::Take(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef183’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:183:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 183 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF8::PutBOM(OutputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef189’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:189:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 189 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF8::Put(OutputByteStream&, Ch)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef195’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:195:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 195 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16::Encode(OutputStream&, unsigned int)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef219’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:219:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 219 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputStream::Ch) >= 2); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static bool rapidjson::UTF16::Decode(InputStream&, unsigned int*)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef234’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:234:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 234 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputStream::Ch) >= 2); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static bool rapidjson::UTF16::Validate(InputStream&, OutputStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef252’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:252:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 252 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputStream::Ch) >= 2); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef253’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:253:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 253 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputStream::Ch) >= 2); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF16LE::TakeBOM(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef271’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:271:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 271 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF16LE::Take(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef278’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:278:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 278 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16LE::PutBOM(OutputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef286’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:286:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 286 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16LE::Put(OutputByteStream&, CharType)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef292’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:292:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 292 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF16BE::TakeBOM(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef303’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:303:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 303 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF16BE::Take(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef310’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:310:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 310 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16BE::PutBOM(OutputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef318’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:318:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 318 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF16BE::Put(OutputByteStream&, CharType)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef324’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:324:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 324 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32::Encode(OutputStream&, unsigned int)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef348’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:348:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 348 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputStream::Ch) >= 4); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static bool rapidjson::UTF32::Decode(InputStream&, unsigned int*)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef355’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:355:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 355 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputStream::Ch) >= 4); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static bool rapidjson::UTF32::Validate(InputStream&, OutputStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef363’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:363:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 363 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputStream::Ch) >= 4); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF32LE::TakeBOM(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef375’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:375:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 375 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF32LE::Take(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef382’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:382:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 382 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32LE::PutBOM(OutputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef392’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:392:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 392 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32LE::Put(OutputByteStream&, CharType)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef398’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:398:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 398 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF32BE::TakeBOM(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef411’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:411:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 411 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static CharType rapidjson::UTF32BE::Take(InputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef418’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:418:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 418 | RAPIDJSON_STATIC_ASSERT(sizeof(typename InputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32BE::PutBOM(OutputByteStream&)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef428’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:428:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 428 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h: In static member function ‘static void rapidjson::UTF32BE::Put(OutputByteStream&, CharType)’: ../Thirdparty/rapidjson/rapidjson.h:115:24: warning: typedef ‘StaticAssertTypedef434’ locally defined but not used [-Wunused-local-typedefs] 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:111:34: note: in definition of macro ‘RAPIDJSON_DO_JOIN2’ 111 | #define RAPIDJSON_DO_JOIN2(X, Y) X##Y | ^ ../Thirdparty/rapidjson/rapidjson.h:109:30: note: in expansion of macro ‘RAPIDJSON_DO_JOIN’ 109 | #define RAPIDJSON_JOIN(X, Y) RAPIDJSON_DO_JOIN(X, Y) | ^~~~~~~~~~~~~~~~~ ../Thirdparty/rapidjson/rapidjson.h:115:9: note: in expansion of macro ‘RAPIDJSON_JOIN’ 115 | RAPIDJSON_JOIN(StaticAssertTypedef, __LINE__) | ^~~~~~~~~~~~~~ ../Thirdparty/rapidjson/encodings.h:434:17: note: in expansion of macro ‘RAPIDJSON_STATIC_ASSERT’ 434 | RAPIDJSON_STATIC_ASSERT(sizeof(typename OutputByteStream::Ch) == 1); | ^~~~~~~~~~~~~~~~~~~~~~~ preqc.cpp: In function ‘void parsePreQCOptions(int, char**)’: preqc.cpp:2090:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 2090 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ overlap-long.cpp: In function ‘void parseOverlapLongOptions(int, char**)’: overlap-long.cpp:338:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 338 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ variant-detectability.cpp: In function ‘void parseVarDetectOptions(int, char**)’: variant-detectability.cpp:205:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 205 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-somatic-variant-filters.o `test -f 'somatic-variant-filters.cpp' || echo './'`somatic-variant-filters.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-haplotype-filter.o `test -f 'haplotype-filter.cpp' || echo './'`haplotype-filter.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I../Util -I../Bigraph -I../SuffixTools -I../StringGraph -I../Concurrency -I../Algorithm -I../SQG -I../Scaffold -I../GraphDiff -I../Thirdparty -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sga-OverlapCommon.o `test -f 'OverlapCommon.cpp' || echo './'`OverlapCommon.cpp In file included from rewrite-evidence-bam.cpp:18: /usr//include/bamtools/api/algorithms/Sort.h:64:18: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 64 | typedef std::binary_function AlignmentSortBase; | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from rewrite-evidence-bam.cpp:10: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ rewrite-evidence-bam.cpp: In function ‘void parseRewriteEvidenceBAMOptions(int, char**)’: rewrite-evidence-bam.cpp:158:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 158 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ haplotype-filter.cpp: In function ‘void parseHaplotypeFilterOptions(int, char**)’: haplotype-filter.cpp:1066:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 1066 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ somatic-variant-filters.cpp: In function ‘void parseSomaticVariantFiltersOptions(int, char**)’: somatic-variant-filters.cpp:794:75: warning: comparison is always true due to limited range of data type [-Wtype-limits] 794 | for (char c; (c = getopt_long(argc, argv, shortopts, longopts, NULL)) != -1;) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -Wall -Wextra -Wno-unknown-pragmas -g -O2 -ffile-prefix-map=/build/sga-trb58E/sga-0.10.15=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -L/usr//lib -L/usr//lib/bamtools -Wl,-z,relro -Wl,-z,now -o sga sga-sga.o sga-index.o sga-overlap.o sga-assemble.o sga-correct.o sga-oview.o sga-preprocess.o sga-rmdup.o sga-merge.o sga-subgraph.o sga-scaffold.o sga-scaffold2fasta.o sga-connect.o sga-walk.o sga-filter.o sga-kmer-count.o sga-stats.o sga-fm-merge.o sga-gmap.o sga-filterBAM.o sga-cluster.o sga-gen-ssa.o sga-bwt2fa.o sga-graph-diff.o sga-graph-concordance.o sga-gapfill.o sga-preqc.o sga-overlap-long.o sga-variant-detectability.o sga-rewrite-evidence-bam.o sga-somatic-variant-filters.o sga-haplotype-filter.o sga-OverlapCommon.o ../Scaffold/libscaffold.a ../GraphDiff/libgraphdiff.a ../StringGraph/libstringgraph.a ../Concurrency/libconcurrency.a ../Algorithm/libalgorithm.a ../SuffixTools/libsuffixtools.a ../Bigraph/libbigraph.a ../Util/libutil.a ../SQG/libsqg.a ../Thirdparty/libthirdparty.a -lz -lbamtools make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SGA' make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src' make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src' make[1]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src' dh_auto_test -a -O--sourcedirectory=src cd src && make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 make[1]: Entering directory '/build/sga-trb58E/sga-0.10.15/src' Making check in bin make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/bin' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/bin' Making check in Thirdparty make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Thirdparty' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Thirdparty' Making check in Util make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Util' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Util' Making check in SQG make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SQG' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SQG' Making check in Bigraph make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Bigraph' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Bigraph' Making check in Algorithm make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Algorithm' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Algorithm' Making check in StringGraph make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/StringGraph' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/StringGraph' Making check in Concurrency make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Concurrency' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Concurrency' Making check in SuffixTools make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SuffixTools' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SuffixTools' Making check in Scaffold make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Scaffold' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Scaffold' Making check in GraphDiff make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/GraphDiff' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/GraphDiff' Making check in SGA make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SGA' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SGA' make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src' make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src' make[1]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/build/sga-trb58E/sga-0.10.15' dh_auto_install cd src && make -j8 install DESTDIR=/build/sga-trb58E/sga-0.10.15/debian/sga AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/sga-trb58E/sga-0.10.15/src' Making install in bin make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/bin' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/bin' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/sga-trb58E/sga-0.10.15/debian/sga/usr/bin' /usr/bin/install -c sga-bam2de sga-mergeDriver '/build/sga-trb58E/sga-0.10.15/debian/sga/usr/bin' make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/bin' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/bin' Making install in Thirdparty make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Thirdparty' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Thirdparty' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Thirdparty' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Thirdparty' Making install in Util make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Util' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Util' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Util' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Util' Making install in SQG make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SQG' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SQG' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SQG' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SQG' Making install in Bigraph make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Bigraph' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Bigraph' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Bigraph' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Bigraph' Making install in Algorithm make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Algorithm' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Algorithm' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Algorithm' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Algorithm' Making install in StringGraph make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/StringGraph' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/StringGraph' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/StringGraph' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/StringGraph' Making install in Concurrency make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Concurrency' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Concurrency' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Concurrency' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Concurrency' Making install in SuffixTools make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SuffixTools' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SuffixTools' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SuffixTools' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SuffixTools' Making install in Scaffold make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Scaffold' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/Scaffold' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Scaffold' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/Scaffold' Making install in GraphDiff make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/GraphDiff' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/GraphDiff' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/GraphDiff' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/GraphDiff' Making install in SGA make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SGA' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src/SGA' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/sga-trb58E/sga-0.10.15/debian/sga/usr/bin' /usr/bin/install -c sga '/build/sga-trb58E/sga-0.10.15/debian/sga/usr/bin' make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SGA' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src/SGA' make[3]: Entering directory '/build/sga-trb58E/sga-0.10.15/src' make[4]: Entering directory '/build/sga-trb58E/sga-0.10.15/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src' make[3]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src' make[2]: Leaving directory '/build/sga-trb58E/sga-0.10.15/src' cp -a src/bin/sga-bam2de.pl debian/sga/usr/bin/sga-bam2de cp -a src/bin/sga-astat.py debian/sga/usr/bin/sga-astat make[1]: Leaving directory '/build/sga-trb58E/sga-0.10.15' dh_install -a -O--sourcedirectory=src dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/build/sga-trb58E/sga-0.10.15' dh_installexamples mkdir -p debian/sga/usr/share/doc/sga/examples sed -e 's?^\(SGA_BIN=sga\).*?\1?' \ -e 's?^.*/bin/sga-align?sga-align?' \ -e 's?^.*/bin/sga-bam2de.pl?sga-bam2de?' \ -e 's?^.*/bin/sga-astat.py?sga-astat?' \ src/examples/sga-celegans.sh > debian/sga/usr/share/doc/sga/examples/sga-celegans.sh make[1]: Leaving directory '/build/sga-trb58E/sga-0.10.15' debian/rules override_dh_installman make[1]: Entering directory '/build/sga-trb58E/sga-0.10.15' dh_installman mkdir -p /build/sga-trb58E/sga-0.10.15/debian/sga/usr/share/man/man1/ PATH=/usr/lib/abyss:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man \ --version-string="0.10.15" \ --no-info \ --name "Make a distance estimate file from a bam file of reads aligned to contigs" \ --output /build/sga-trb58E/sga-0.10.15/debian/sga/usr/share/man/man1//sga-bam2de.1 \ /build/sga-trb58E/sga-0.10.15/debian/sga/usr/bin/sga-bam2de help2man \ --no-info \ --version-string="0.10.15" \ --name="String Graph Assembler: de novo genome assembler that uses string graphs" \ --output /build/sga-trb58E/sga-0.10.15/debian/sga/usr/share/man/man1//sga.1 \ /build/sga-trb58E/sga-0.10.15/debian/sga/usr/bin/sga help2man \ --no-info\ --version-string="0.10.15" \ --name="generate sga merge commands from a list of files" \ --output /build/sga-trb58E/sga-0.10.15/debian/sga/usr/share/man/man1//sga-mergeDriver.1 \ /build/sga-trb58E/sga-0.10.15/debian/sga/usr/bin/sga-mergeDriver make[1]: Leaving directory '/build/sga-trb58E/sga-0.10.15' dh_python3 -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'sga' in '../sga_0.10.15-7+b1_ppc64el.deb'. dpkg-deb: building package 'sga-dbgsym' in '../sga-dbgsym_0.10.15-7+b1_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../sga_0.10.15-7+b1_ppc64el.buildinfo dpkg-genchanges --build=any -O../sga_0.10.15-7+b1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-11-27T03:23:33Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 27 Nov 2025 03:23:34 +0000 | +------------------------------------------------------------------------------+ sga_0.10.15-7+b1_ppc64el.changes: --------------------------------- Format: 1.8 Date: Fri, 02 Sep 2022 20:08:08 +0000 Source: sga (0.10.15-7) Binary: sga sga-dbgsym Binary-Only: yes Architecture: ppc64el Version: 0.10.15-7+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: ppc64el Build Daemon (ppc64el-unicamp-01) Description: sga - de novo genome assembler that uses string graphs Changes: sga (0.10.15-7+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for ppc64el; no source changes. * Rebuild against libbamtools2.5.2 Checksums-Sha1: 3e282e8fea6311b5fdad53d09e4c497e13968043 12822732 sga-dbgsym_0.10.15-7+b1_ppc64el.deb 5193ec9f69ae13033aa6d3e4b6fb040f6307ef19 8398 sga_0.10.15-7+b1_ppc64el.buildinfo 2694719f9628688697761c82eb11ccce0fcb1e1a 709240 sga_0.10.15-7+b1_ppc64el.deb Checksums-Sha256: 434fdf78f7acc0b9c106e7fd614331742a43036be6cb5986870f6369a0a95a7d 12822732 sga-dbgsym_0.10.15-7+b1_ppc64el.deb bcc6b4cfe6b4d78a5f33e4052b577d99cc2dc28b116b2d611a280f2edeb24889 8398 sga_0.10.15-7+b1_ppc64el.buildinfo 0fce5b0251cf782c350822d1d0dcfcb3560f3f087da90525fc9b542aa2db46fa 709240 sga_0.10.15-7+b1_ppc64el.deb Files: e68e9bb1d61919087bb9ad3204cda990 12822732 debug optional sga-dbgsym_0.10.15-7+b1_ppc64el.deb d1b7ea6f4cf6121bf2936720039808d9 8398 science optional sga_0.10.15-7+b1_ppc64el.buildinfo 8663dd30cdf55f0fa97905a648687764 709240 science optional sga_0.10.15-7+b1_ppc64el.deb +------------------------------------------------------------------------------+ | Buildinfo Thu, 27 Nov 2025 03:23:34 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: sga (0.10.15-7) Binary: sga sga-dbgsym Architecture: ppc64el Version: 0.10.15-7+b1 Binary-Only-Changes: sga (0.10.15-7+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for ppc64el; no source changes. * Rebuild against libbamtools2.5.2 . -- ppc64el Build Daemon (ppc64el-unicamp-01) Fri, 02 Sep 2022 20:08:08 +0000 Checksums-Md5: e68e9bb1d61919087bb9ad3204cda990 12822732 sga-dbgsym_0.10.15-7+b1_ppc64el.deb 8663dd30cdf55f0fa97905a648687764 709240 sga_0.10.15-7+b1_ppc64el.deb Checksums-Sha1: 3e282e8fea6311b5fdad53d09e4c497e13968043 12822732 sga-dbgsym_0.10.15-7+b1_ppc64el.deb 2694719f9628688697761c82eb11ccce0fcb1e1a 709240 sga_0.10.15-7+b1_ppc64el.deb Checksums-Sha256: 434fdf78f7acc0b9c106e7fd614331742a43036be6cb5986870f6369a0a95a7d 12822732 sga-dbgsym_0.10.15-7+b1_ppc64el.deb 0fce5b0251cf782c350822d1d0dcfcb3560f3f087da90525fc9b542aa2db46fa 709240 sga_0.10.15-7+b1_ppc64el.deb Build-Origin: Debian Build-Architecture: ppc64el Build-Date: Thu, 27 Nov 2025 03:23:33 +0000 Build-Path: /build/sga-trb58E/sga-0.10.15 Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-9), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.6.0), bash (= 5.2~rc2-2), binutils (= 2.38.90.20220713-2), binutils-common (= 2.38.90.20220713-2), binutils-powerpc64le-linux-gnu (= 2.38.90.20220713-2), bsdextrautils (= 2.38.1-1), bsdutils (= 1:2.38.1-1), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:12.2.0-1), cpp-12 (= 12.2.0-1), dash (= 0.5.11+git20210903+057cd650a4ed-8), debconf (= 1.5.79), debhelper (= 13.9.1), debianutils (= 5.7-0.3), dh-autoreconf (= 20), dh-python (= 5.20220819), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dmsetup (= 2:1.02.185-1), dpkg (= 1.21.9), dpkg-dev (= 1.21.9), dwz (= 0.14-1), file (= 1:5.41-4), findutils (= 4.9.0-3), fontconfig (= 2.13.1-4.4), fontconfig-config (= 2.13.1-4.4), fonts-dejavu-core (= 2.37-2), g++ (= 4:12.2.0-1), g++-12 (= 12.2.0-1), gcc (= 4:12.2.0-1), gcc-12 (= 12.2.0-1), gcc-12-base (= 12.2.0-1), gettext (= 0.21-9), gettext-base (= 0.21-9), graphviz (= 2.42.2-7), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), help2man (= 1.49.2), hostname (= 3.23), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libann0 (= 1.1.2+doc-7), libapparmor1 (= 3.0.7-1), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan8 (= 12.2.0-1), libatomic1 (= 12.2.0-1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbamtools-dev (= 2.5.2+dfsg-2), libbamtools2.5.2 (= 2.5.2+dfsg-2), libbinutils (= 2.38.90.20220713-2), libblkid1 (= 2.38.1-1), libbrotli1 (= 1.0.9-2+b4), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.34-7), libc-dev-bin (= 2.34-7), libc6 (= 2.34-7), libc6-dev (= 2.34-7), libcairo2 (= 1.16.0-6), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-1), libcdt5 (= 2.42.2-7), libcgraph6 (= 2.42.2-7), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2), libctf-nobfd0 (= 2.38.90.20220713-2), libctf0 (= 2.38.90.20220713-2), libcurl3-gnutls (= 7.85.0-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264), libdebhelper-perl (= 13.9.1), libdeflate0 (= 1.12-1), libdevmapper1.02.1 (= 2:1.02.185-1), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libfdisk1 (= 2.38.1-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.4), libfreetype6 (= 2.12.1+dfsg-3), libfribidi0 (= 1.0.8-2.1), libgcc-12-dev (= 12.2.0-1), libgcc-s1 (= 12.2.0-1), libgcrypt20 (= 1.10.1-2), libgd3 (= 2.3.3-6), libgdbm-compat4 (= 1.23-1+b1), libgdbm6 (= 1.23-1+b1), libglib2.0-0 (= 2.73.3-3), libgmp10 (= 2:6.2.1+dfsg1-1), libgnutls30 (= 3.7.7-2), libgomp1 (= 12.2.0-1), libgpg-error0 (= 1.45-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.20-1), libgts-0.7-5 (= 0.7.6+darcs121130-5), libgvc6 (= 2.42.2-7), libgvpr2 (= 2.42.2-7), libharfbuzz0b (= 2.7.4-1+b1), libhogweed6 (= 3.8.1-2), libhts3 (= 1.13+ds-2+b1), libhtscodecs2 (= 1.2.2-1), libice6 (= 2:1.0.10-1), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1+b1), libip4tc2 (= 1.8.8-1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-1), libjbig0 (= 2.1-3.1+b2), libjpeg62-turbo (= 1:2.1.2-1), libjson-c5 (= 0.16-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkmod2 (= 30+20220630-3), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblab-gamut1 (= 2.42.2-7), libldap-2.5-0 (= 2.5.12+dfsg-2+b1), liblerc4 (= 4.0.0+ds-1), liblocale-gettext-perl (= 1.07-4+b2), liblsan0 (= 12.2.0-1), libltdl7 (= 2.4.7-4), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-1), libmpc3 (= 1.2.1-2), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.49.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.5.2-2), libpam-modules-bin (= 1.5.2-2), libpam-runtime (= 1.5.2-2), libpam0g (= 1.5.2-2), libpango-1.0-0 (= 1.50.9+ds-1), libpangocairo-1.0-0 (= 1.50.9+ds-1), libpangoft2-1.0-0 (= 1.50.9+ds-1), libpathplan4 (= 2.42.2-7), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5), libpipeline1 (= 1.5.6-2), libpixman-1-0 (= 0.40.0-1), libpng16-16 (= 1.6.37-5), libpsl5 (= 0.21.0-1.2), libpython3-stdlib (= 3.10.6-1), libpython3.10-minimal (= 3.10.6-1), libpython3.10-stdlib (= 3.10.6-1), libquadmath0 (= 12.2.0-1), libreadline8 (= 8.2~rc2-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-7), libsasl2-modules-db (= 2.1.28+dfsg-7), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.38.1-1), libsparsehash-dev (= 2.0.3-2), libsqlite3-0 (= 3.39.2-1), libssh2-1 (= 1.10.0-3+b1), libssl3 (= 3.0.5-2), libstdc++-12-dev (= 12.2.0-1), libstdc++6 (= 12.2.0-1), libsub-override-perl (= 0.09-3), libsystemd-shared (= 251.4-3), libsystemd0 (= 251.4-3), libtasn1-6 (= 4.18.0-4), libthai-data (= 0.1.29-1), libthai0 (= 0.1.29-1), libtiff5 (= 4.4.0-4), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan2 (= 12.2.0-1), libubsan1 (= 12.2.0-1), libuchardet0 (= 0.0.7-1), libudev1 (= 251.4-3), libunistring2 (= 1.0-1), libuuid1 (= 2.38.1-1), libwebp7 (= 1.2.2-2+b1), libx11-6 (= 2:1.8.1-2), libx11-data (= 2:1.8.1-2), libxau6 (= 1:1.0.9-1), libxaw7 (= 2:1.0.14-1), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.4-1), libxml2 (= 2.9.14+dfsg-1+b1), libxmu6 (= 2:1.1.3-3), libxpm4 (= 1:3.5.12-1), libxrender1 (= 1:0.9.10-1.1), libxt6 (= 1:1.2.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.18.16-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), mount (= 2.38.1-1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.34.0-5), perl-base (= 5.34.0-5), perl-modules-5.34 (= 5.34.0-5), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.6-1), python3-distutils (= 3.10.6-1), python3-lib2to3 (= 3.10.6-1), python3-minimal (= 3.10.6-1), python3-pysam (= 0.17.0+ds-2+b2), python3-ruffus (= 2.8.4-4), python3.10 (= 3.10.6-1), python3.10-minimal (= 3.10.6-1), readline-common (= 8.2~rc2-2), rpcsvc-proto (= 1.4.2-4), samtools (= 1.13-4), sed (= 4.8-1), sensible-utils (= 0.0.17), systemd (= 251.4-3), sysvinit-utils (= 3.04-1), tar (= 1.34+dfsg-1), ucf (= 3.0043), util-linux (= 2.38.1-1), util-linux-extra (= 2.38.1-1), x11-common (= 1:7.7+23), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1), zlib1g-dev (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1662149288" +------------------------------------------------------------------------------+ | Package contents Thu, 27 Nov 2025 03:23:34 +0000 | +------------------------------------------------------------------------------+ sga-dbgsym_0.10.15-7+b1_ppc64el.deb ----------------------------------- new Debian package, version 2.0. size 12822732 bytes: control archive=540 bytes. 380 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: sga-dbgsym Source: sga (0.10.15-7) Version: 0.10.15-7+b1 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 12797 Depends: sga (= 0.10.15-7+b1) Section: debug Priority: optional Description: debug symbols for sga Build-Ids: b8dbf2f36eb520ea0d5967c2a60361ecd71541fc drwxr-xr-x root/root 0 2022-09-02 20:08 ./ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/lib/ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/lib/debug/.build-id/b8/ -rw-r--r-- root/root 13092944 2022-09-02 20:08 ./usr/lib/debug/.build-id/b8/dbf2f36eb520ea0d5967c2a60361ecd71541fc.debug drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/share/ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-09-02 20:08 ./usr/share/doc/sga-dbgsym -> sga sga_0.10.15-7+b1_ppc64el.deb ---------------------------- new Debian package, version 2.0. size 709240 bytes: control archive=1312 bytes. 897 bytes, 18 lines control 1146 bytes, 18 lines md5sums Package: sga Source: sga (0.10.15-7) Version: 0.10.15-7+b1 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 2304 Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), python3:any, perl:any, samtools, python3-ruffus, python3-pysam Recommends: abyss Section: science Priority: optional Homepage: https://github.com/jts/sga Description: de novo genome assembler that uses string graphs The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. . SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads. drwxr-xr-x root/root 0 2022-09-02 20:08 ./ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/bin/ -rwxr-xr-x root/root 2304128 2022-09-02 20:08 ./usr/bin/sga -rwxr-xr-x root/root 4508 2022-09-02 20:08 ./usr/bin/sga-align -rwxr-xr-x root/root 5734 2022-09-02 20:08 ./usr/bin/sga-astat -rwxr-xr-x root/root 3290 2022-09-02 20:08 ./usr/bin/sga-bam2de -rwxr-xr-x root/root 1873 2022-09-02 20:08 ./usr/bin/sga-mergeDriver drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/share/ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/share/doc/sga/ -rw-r--r-- root/root 349 2021-09-17 13:53 ./usr/share/doc/sga/README.Debian -rw-r--r-- root/root 3280 2016-08-05 20:27 ./usr/share/doc/sga/README.gz -rw-r--r-- root/root 515 2016-08-05 20:27 ./usr/share/doc/sga/README.md -rw-r--r-- root/root 1268 2022-09-02 20:08 ./usr/share/doc/sga/changelog.Debian.gz -rw-r--r-- root/root 224 2022-09-02 20:08 ./usr/share/doc/sga/changelog.Debian.ppc64el.gz -rw-r--r-- root/root 3396 2021-09-17 13:53 ./usr/share/doc/sga/copyright drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/share/doc/sga/examples/ -rw-r--r-- root/root 3312 2022-09-02 20:08 ./usr/share/doc/sga/examples/sga-celegans.sh -rw-r--r-- root/root 3391 2022-09-02 20:08 ./usr/share/doc/sga/index.html drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/share/man/ drwxr-xr-x root/root 0 2022-09-02 20:08 ./usr/share/man/man1/ -rw-r--r-- root/root 517 2022-09-02 20:08 ./usr/share/man/man1/sga-align.1.gz -rw-r--r-- root/root 656 2022-09-02 20:08 ./usr/share/man/man1/sga-astat.1.gz -rw-r--r-- root/root 523 2022-09-02 20:08 ./usr/share/man/man1/sga-bam2de.1.gz -rw-r--r-- root/root 328 2022-09-02 20:08 ./usr/share/man/man1/sga-mergeDriver.1.gz -rw-r--r-- root/root 1023 2022-09-02 20:08 ./usr/share/man/man1/sga.1.gz +------------------------------------------------------------------------------+ | Post Build Thu, 27 Nov 2025 03:23:35 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Thu, 27 Nov 2025 03:23:35 +0000 | +------------------------------------------------------------------------------+ Purging /build/sga-trb58E Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 27 Nov 2025 03:23:37 +0000 | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 375680 Build-Time: 116 Distribution: unstable Host Architecture: ppc64el Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdHZkxko/inputs/sga_0.10.15-7.dsc Machine Architecture: ppc64el Package: sga Package-Time: 136 Source-Version: 0.10.15-7 Space: 375680 Status: successful Version: 0.10.15-7+b1 -------------------------------------------------------------------------------- Finished at 2025-11-27T03:23:33Z Build needed 00:02:16, 375680k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdHZkxko/out checking sga-dbgsym_0.10.15-7+b1_ppc64el.deb: size... sha256... sha1... md5... all OK checking sga_0.10.15-7+b1_ppc64el.deb: size... value of md5 differs for sga_0.10.15-7+b1_ppc64el.deb