=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdkVcisA/inputs/diamond-aligner_2.1.14-1_riscv64.buildinfo Source: diamond-aligner Version: 2.1.14-1 rebuilderd-worker node: riscv64-04 +------------------------------------------------------------------------------+ | Downloading sources Wed, 29 Oct 2025 17:25:53 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [55.8 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [147 kB] Get:7 https://deb.debian.org/debian sid InRelease [207 kB] Get:8 https://deb.debian.org/debian experimental InRelease [101 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6536 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [89.9 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [89.7 kB] Get:15 https://deb.debian.org/debian trixie-proposed-updates/non-free-firmware Sources [692 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [79.5 kB] Get:17 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [1052 B] Get:18 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:19 https://deb.debian.org/debian forky/non-free-firmware Sources [7128 B] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [9088 B] Get:21 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [2572 B] Get:23 https://deb.debian.org/debian experimental/main Sources [375 kB] Fetched 33.8 MB in 25s (1365 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/d/diamond-aligner/diamond-aligner_2.1.14-1.dsc' diamond-aligner_2.1.14-1.dsc 2237 SHA256:796d09b400f2e57e2b7f3dbbfd3fc1c09f3a259e1e6264a9623243d3da6796ff 'https://deb.debian.org/debian/pool/main/d/diamond-aligner/diamond-aligner_2.1.14.orig.tar.gz' diamond-aligner_2.1.14.orig.tar.gz 1752971 SHA256:46ad0ded90128d55efc10641d60fa40eeb423a9a0bffd9f5997a7b72e056b011 'https://deb.debian.org/debian/pool/main/d/diamond-aligner/diamond-aligner_2.1.14-1.debian.tar.xz' diamond-aligner_2.1.14-1.debian.tar.xz 137012 SHA256:22b439d0d1bb276c17d56fe419ab6d71f3cfcec7d71951465bc46b2d1889a8fe 46ad0ded90128d55efc10641d60fa40eeb423a9a0bffd9f5997a7b72e056b011 diamond-aligner_2.1.14.orig.tar.gz 22b439d0d1bb276c17d56fe419ab6d71f3cfcec7d71951465bc46b2d1889a8fe diamond-aligner_2.1.14-1.debian.tar.xz 796d09b400f2e57e2b7f3dbbfd3fc1c09f3a259e1e6264a9623243d3da6796ff diamond-aligner_2.1.14-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Wed, 29 Oct 2025 17:26:22 +0000 | +------------------------------------------------------------------------------+ Rebuilding diamond-aligner=2.1.14-1 in /srv/rebuilderd/tmp/rebuilderdkVcisA/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdkVcisA/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdkVcisA/inputs/diamond-aligner_2.1.14-1_riscv64.buildinfo /srv/rebuilderd/tmp/rebuilderdkVcisA/inputs/diamond-aligner_2.1.14-1_riscv64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/diamond-aligner-2.1.14 I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid InRelease [207 kB] Get:2 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 Packages [9828 kB] Fetched 10.0 MB in 7s (1433 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20251017T144549Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libk5crypto3 riscv64 1.21.3-5 [100 kB] Fetched 100 kB in 0s (1668 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0g7merxj/libk5crypto3_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 g++-15-riscv64-linux-gnu riscv64 15.2.0-4 [113 MB] Fetched 113 MB in 6s (18.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9tjiz45d/g++-15-riscv64-linux-gnu_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 bsdextrautils riscv64 2.41.2-4 [102 kB] Fetched 102 kB in 0s (1619 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaf8s7jdr/bsdextrautils_2.41.2-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libstdc++-15-dev riscv64 15.2.0-4 [6140 kB] Fetched 6140 kB in 0s (15.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn5cgew8f/libstdc++-15-dev_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 groff-base riscv64 1.23.0-9 [1163 kB] Fetched 1163 kB in 0s (9791 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx8h8h0du/groff-base_1.23.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libubsan1 riscv64 15.2.0-4 [1177 kB] Fetched 1177 kB in 0s (9708 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0yqklhs4/libubsan1_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libmagic1t64 riscv64 1:5.46-5 [117 kB] Fetched 117 kB in 0s (1917 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpl9swaqwv/libmagic1t64_5.46-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 perl riscv64 5.40.1-6 [267 kB] Fetched 267 kB in 0s (3795 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe0wyvp89/perl_5.40.1-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libjansson4 riscv64 2.14-2+b3 [40.7 kB] Fetched 40.7 kB in 0s (714 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmovnnquc/libjansson4_2.14-2+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 coreutils riscv64 9.7-3 [3036 kB] Fetched 3036 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzptr13p7/coreutils_9.7-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libnettle8t64 riscv64 3.10.2-1 [332 kB] Fetched 332 kB in 0s (4480 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xif2vpu/libnettle8t64_3.10.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libxxhash0 riscv64 0.8.3-2 [40.1 kB] Fetched 40.1 kB in 0s (652 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa8emy7s3/libxxhash0_0.8.3-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libgdbm6t64 riscv64 1.26-1 [79.0 kB] Fetched 79.0 kB in 0s (1344 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0twmlsb7/libgdbm6t64_1.26-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 base-files riscv64 14 [72.9 kB] Fetched 72.9 kB in 0s (1257 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptoae43_w/base-files_14_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 dpkg riscv64 1.22.21 [1542 kB] Fetched 1542 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpob0zus1t/dpkg_1.22.21_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libexpat1 riscv64 2.7.3-1 [106 kB] Fetched 106 kB in 0s (1743 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpps66ayt6/libexpat1_2.7.3-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libbrotli1 riscv64 1.1.0-2+b7 [358 kB] Fetched 358 kB in 0s (4721 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps9fvul_g/libbrotli1_1.1.0-2+b7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 autopoint all 0.23.1-2 [770 kB] Fetched 770 kB in 0s (8034 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0t0of4mu/autopoint_0.23.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 binutils-riscv64-linux-gnu riscv64 2.45-7 [891 kB] Fetched 891 kB in 0s (8219 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp77vd2s8h/binutils-riscv64-linux-gnu_2.45-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libuchardet0 riscv64 0.0.8-2 [68.3 kB] Fetched 68.3 kB in 0s (1162 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4nsdiww7/libuchardet0_0.0.8-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 hostname riscv64 3.25 [10.7 kB] Fetched 10.7 kB in 0s (199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqei_271k/hostname_3.25_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libbz2-1.0 riscv64 1.0.8-6 [40.3 kB] Fetched 40.3 kB in 0s (704 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2jskqj7c/libbz2-1.0_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 dash riscv64 0.5.12-12 [101 kB] Fetched 101 kB in 0s (1701 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp91hjpro9/dash_0.5.12-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 g++-15 riscv64 15.2.0-4 [23.4 kB] Fetched 23.4 kB in 0s (419 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92ji6m4d/g++-15_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libssl3t64 riscv64 3.5.4-1 [2206 kB] Fetched 2206 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfnqpru7g/libssl3t64_3.5.4-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libdebhelper-perl all 13.28 [92.4 kB] Fetched 92.4 kB in 0s (1492 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi97kpgsv/libdebhelper-perl_13.28_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 gcc-15-riscv64-linux-gnu riscv64 15.2.0-4 [119 MB] Fetched 119 MB in 7s (18.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9zbs608/gcc-15-riscv64-linux-gnu_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 cpp-15-riscv64-linux-gnu riscv64 15.2.0-4 [107 MB] Fetched 107 MB in 6s (18.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4fapwg_w/cpp-15-riscv64-linux-gnu_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-10 [20.2 kB] Fetched 20.2 kB in 0s (362 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9o9xchlz/libsasl2-modules-db_2.1.28+dfsg1-10_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libuuid1 riscv64 2.41.2-4 [40.0 kB] Fetched 40.0 kB in 0s (681 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6knsy20v/libuuid1_2.41.2-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libhogweed6t64 riscv64 3.10.2-1 [336 kB] Fetched 336 kB in 0s (4674 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3m4y62fk/libhogweed6t64_3.10.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 findutils riscv64 4.10.0-3 [706 kB] Fetched 706 kB in 0s (7404 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaqsvn63u/findutils_4.10.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libacl1 riscv64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (591 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppum0tqj6/libacl1_2.3.2-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libnghttp2-14 riscv64 1.64.0-1.1+b1 [78.1 kB] Fetched 78.1 kB in 0s (1338 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_jkbniy9/libnghttp2-14_1.64.0-1.1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libmagic-mgc riscv64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (4588 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpaqsr56b7/libmagic-mgc_5.46-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Fetched 3019 kB in 0s (13.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphb3jajf5/perl-modules-5.40_5.40.1-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libstdc++6 riscv64 15.2.0-4 [714 kB] Fetched 714 kB in 0s (7629 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpijo461ao/libstdc++6_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Fetched 85.7 kB in 0s (1419 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp2mkgmfz9/zlib1g_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 gcc-15 riscv64 15.2.0-4 [511 kB] Fetched 511 kB in 0s (6192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp___m79ms/gcc-15_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libidn2-0 riscv64 2.3.8-4 [110 kB] Fetched 110 kB in 0s (1759 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptre4ah6r/libidn2-0_2.3.8-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 xz-utils riscv64 5.8.1-2 [659 kB] Fetched 659 kB in 0s (7293 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe0416dyq/xz-utils_5.8.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd8pkz8d8/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB] Fetched 978 kB in 0s (9027 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp5pidswd9/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libzstd1 riscv64 1.5.7+dfsg-2 [372 kB] Fetched 372 kB in 0s (4919 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuf2dgxnd/libzstd1_1.5.7+dfsg-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libblkid1 riscv64 2.41.2-4 [193 kB] Fetched 193 kB in 0s (2992 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxbmrqfk7/libblkid1_2.41.2-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libtasn1-6 riscv64 4.20.0-2 [50.6 kB] Fetched 50.6 kB in 0s (896 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpca1ygqwr/libtasn1-6_4.20.0-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libffi8 riscv64 3.5.2-2 [21.8 kB] Fetched 21.8 kB in 0s (402 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpowslr1_g/libffi8_3.5.2-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libbinutils riscv64 2.45-7 [521 kB] Fetched 521 kB in 0s (5947 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd03zo3bw/libbinutils_2.45-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 diffutils riscv64 1:3.10-4 [387 kB] Fetched 387 kB in 0s (5171 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpg03v79cm/diffutils_3.10-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libcom-err2 riscv64 1.47.2-3+b3 [24.7 kB] Fetched 24.7 kB in 0s (436 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4d5g48c8/libcom-err2_1.47.2-3+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libselinux1 riscv64 3.8.1-1 [88.1 kB] Fetched 88.1 kB in 0s (1513 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgy0yeeip/libselinux1_3.8.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libcc1-0 riscv64 15.2.0-4 [40.2 kB] Fetched 40.2 kB in 0s (721 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0xh2nde7/libcc1-0_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (2008 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd45auvj/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libgdbm-compat4t64 riscv64 1.26-1 [52.9 kB] Fetched 52.9 kB in 0s (932 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3qej4eit/libgdbm-compat4t64_1.26-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 librhash1 riscv64 1.4.6-1 [149 kB] Fetched 149 kB in 0s (2274 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyfhpdz9f/librhash1_1.4.6-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libgnutls30t64 riscv64 3.8.10-2 [1463 kB] Fetched 1463 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpevhb183v/libgnutls30t64_3.8.10-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 bash riscv64 5.3-1 [1560 kB] Fetched 1560 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp24qenmwd/bash_5.3-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libgssapi-krb5-2 riscv64 1.21.3-5 [143 kB] Fetched 143 kB in 0s (2286 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpimtzzpuh/libgssapi-krb5-2_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libgcc-s1 riscv64 15.2.0-4 [61.5 kB] Fetched 61.5 kB in 0s (1060 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpunj6a5qo/libgcc-s1_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libgprofng0 riscv64 2.45-7 [717 kB] Fetched 717 kB in 0s (7682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc521ane8/libgprofng0_2.45-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libtsan2 riscv64 15.2.0-4 [2652 kB] Fetched 2652 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8capjgve/libtsan2_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-10 [60.6 kB] Fetched 60.6 kB in 0s (873 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzoe3ipes/libsasl2-2_2.1.28+dfsg1-10_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-10 [719 kB] Fetched 719 kB in 0s (7580 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqqkf5a55/libdb5.3t64_5.3.28+dfsg2-10_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 procps riscv64 2:4.0.4-9 [880 kB] Fetched 880 kB in 0s (7728 kB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9_riscv64.deb' to '/srv/rebuilderd/tmp/tmpq32673fh/procps_4.0.4-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libctf-nobfd0 riscv64 2.45-7 [163 kB] Fetched 163 kB in 0s (2434 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpou3uehe5/libctf-nobfd0_2.45-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libperl5.40 riscv64 5.40.1-6 [3945 kB] Fetched 3945 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyzdg5xyq/libperl5.40_5.40.1-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libkrb5-3 riscv64 1.21.3-5 [334 kB] Fetched 334 kB in 0s (4447 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp48eo8hsp/libkrb5-3_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libngtcp2-16 riscv64 1.16.0-1 [141 kB] Fetched 141 kB in 0s (2294 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnbb6nr3i/libngtcp2-16_1.16.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 g++ riscv64 4:15.2.0-4 [1332 B] Fetched 1332 B in 0s (25.0 kB/s) dpkg-name: info: moved 'g++_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpr0_ri3_6/g++_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (1750 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgks5d8_s/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libp11-kit0 riscv64 0.25.9-2 [449 kB] Fetched 449 kB in 0s (5627 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiy386uml/libp11-kit0_0.25.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 perl-base riscv64 5.40.1-6 [1662 kB] Fetched 1662 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjdz2b61_/perl-base_5.40.1-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (6199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_fbfmghi/autoconf_2.72-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libpcre2-8-0 riscv64 10.46-1 [301 kB] Fetched 301 kB in 0s (4230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpivhmc3xs/libpcre2-8-0_10.46-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libsframe2 riscv64 2.45-7 [80.5 kB] Fetched 80.5 kB in 0s (1381 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuipfx0wk/libsframe2_2.45-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libpsl5t64 riscv64 0.21.2-1.1+b1 [57.3 kB] Fetched 57.3 kB in 0s (990 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsf3ruglu/libpsl5t64_0.21.2-1.1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (254 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpd5xg5gpt/libaudit-common_4.1.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (3642 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5blhty58/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libasan8 riscv64 15.2.0-4 [2938 kB] Fetched 2938 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2odn47bl/libasan8_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 ncurses-bin riscv64 6.5+20250216-2 [436 kB] Fetched 436 kB in 0s (5530 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkk82hazt/ncurses-bin_6.5+20250216-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 sysvinit-utils riscv64 3.14-4 [33.7 kB] Fetched 33.7 kB in 0s (590 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkirfddy0/sysvinit-utils_3.14-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libcap-ng0 riscv64 0.8.5-4+b1 [17.2 kB] Fetched 17.2 kB in 0s (311 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7l7yti5t/libcap-ng0_0.8.5-4+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 mawk riscv64 1.3.4.20250131-1 [142 kB] Fetched 142 kB in 0s (2244 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8je472o6/mawk_1.3.4.20250131-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 patch riscv64 2.8-2 [134 kB] Fetched 134 kB in 0s (2175 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5hdearsh/patch_2.8-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 tar riscv64 1.35+dfsg-3.1 [822 kB] Fetched 822 kB in 0s (7532 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvw2847la/tar_1.35+dfsg-3.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libcurl4t64 riscv64 8.16.0-4 [413 kB] Fetched 413 kB in 0s (5382 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzdkta7k5/libcurl4t64_8.16.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (700 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppdxl4x6_/init-system-helpers_1.69_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 liblsan0 riscv64 15.2.0-4 [1326 kB] Fetched 1326 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo42v018h/liblsan0_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libelf1t64 riscv64 0.193-3 [195 kB] Fetched 195 kB in 0s (2956 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp46h9pcpg/libelf1t64_0.193-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 build-essential riscv64 12.12 [4628 B] Fetched 4628 B in 0s (83.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp484kdv06/build-essential_12.12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 debhelper all 13.28 [941 kB] Fetched 941 kB in 0s (8561 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg5xxwv1j/debhelper_13.28_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libtinfo6 riscv64 6.5+20250216-2 [347 kB] Fetched 347 kB in 0s (4651 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_9dknqby/libtinfo6_6.5+20250216-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 cmake riscv64 4.1.1+really3.31.6-2 [11.4 MB] Fetched 11.4 MB in 1s (16.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp96uo_jdt/cmake_4.1.1+really3.31.6-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libpam0g riscv64 1.7.0-5 [70.2 kB] Fetched 70.2 kB in 0s (1198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph02b5cth/libpam0g_1.7.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 base-passwd riscv64 3.6.7 [53.8 kB] Fetched 53.8 kB in 0s (936 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppcwbg_yg/base-passwd_3.6.7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 rpcsvc-proto riscv64 1.4.3-1+b2 [62.3 kB] Fetched 62.3 kB in 0s (1087 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfast33gt/rpcsvc-proto_1.4.3-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libdebconfclient0 riscv64 0.280 [10.5 kB] Fetched 10.5 kB in 0s (187 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn3nfbvce/libdebconfclient0_0.280_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 automake all 1:1.18.1-2 [877 kB] Fetched 877 kB in 0s (8544 kB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-2_all.deb' to '/srv/rebuilderd/tmp/tmprm6jozb6/automake_1.18.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 gcc-15-base riscv64 15.2.0-4 [52.8 kB] Fetched 52.8 kB in 0s (915 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsnvmuo3f/gcc-15-base_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libcrypt-dev riscv64 1:4.4.38-1 [221 kB] Fetched 221 kB in 0s (3314 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp593zsgqk/libcrypt-dev_4.4.38-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libldap2 riscv64 2.6.10+dfsg-1 [197 kB] Fetched 197 kB in 0s (2959 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6m5eijtg/libldap2_2.6.10+dfsg-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libudev1 riscv64 258.1-1 [158 kB] Fetched 158 kB in 0s (2482 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_c2jayru/libudev1_258.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libitm1 riscv64 15.2.0-4 [25.5 kB] Fetched 25.5 kB in 0s (451 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptmutrjfc/libitm1_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libc-bin riscv64 2.41-12 [606 kB] Fetched 606 kB in 0s (6922 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa4uvb3bm/libc-bin_2.41-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libproc2-0 riscv64 2:4.0.4-9 [65.9 kB] Fetched 65.9 kB in 0s (1100 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9_riscv64.deb' to '/srv/rebuilderd/tmp/tmpebkjet54/libproc2-0_4.0.4-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libcrypt1 riscv64 1:4.4.38-1 [106 kB] Fetched 106 kB in 0s (1768 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpg3yh7fji/libcrypt1_4.4.38-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 debianutils riscv64 5.23.2 [91.7 kB] Fetched 91.7 kB in 0s (1526 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppj_7unuu/debianutils_5.23.2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libmpfr6 riscv64 4.2.2-2 [664 kB] Fetched 664 kB in 0s (7195 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnacpxqnu/libmpfr6_4.2.2-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libuv1t64 riscv64 1.51.0-2 [156 kB] Fetched 156 kB in 0s (2493 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuo7fqge_/libuv1t64_1.51.0-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (357 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3y3s65g3/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-3 [58.7 kB] Fetched 58.7 kB in 0s (1039 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ddjohx7/librtmp1_2.4+20151223.gitfa8646d.1-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libngtcp2-crypto-ossl0 riscv64 1.16.0-1 [27.7 kB] Fetched 27.7 kB in 0s (489 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamu0kkxi/libngtcp2-crypto-ossl0_1.16.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libarchive13t64 riscv64 3.7.4-4+b1 [367 kB] Fetched 367 kB in 0s (4920 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf656v4zd/libarchive13t64_3.7.4-4+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 liblzma5 riscv64 5.8.1-2 [312 kB] Fetched 312 kB in 0s (4295 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1__xild6/liblzma5_5.8.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libattr1 riscv64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (405 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmp9_rour3c/libattr1_2.5.2-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 binutils riscv64 2.45-7 [268 kB] Fetched 268 kB in 0s (3932 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7nhmhfsp/binutils_2.45-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libxml2-16 riscv64 2.14.6+dfsg-0.1 [650 kB] Fetched 650 kB in 0s (7238 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp45jf8vxf/libxml2-16_2.14.6+dfsg-0.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libncursesw6 riscv64 6.5+20250216-2 [141 kB] Fetched 141 kB in 0s (2230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2eimhwjs/libncursesw6_6.5+20250216-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (161 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbloqn_fv/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libkrb5support0 riscv64 1.21.3-5 [34.0 kB] Fetched 34.0 kB in 0s (615 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4oryi6db/libkrb5support0_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 man-db riscv64 2.13.1-1 [1458 kB] Fetched 1458 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy543umu2/man-db_2.13.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 gettext riscv64 0.23.1-2+b1 [1682 kB] Fetched 1682 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_al8ibch/gettext_0.23.1-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (470 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo76u6hfq/sensible-utils_0.0.26_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 cpp-riscv64-linux-gnu riscv64 4:15.2.0-4 [5284 B] Fetched 5284 B in 0s (98.6 kB/s) dpkg-name: info: moved 'cpp-riscv64-linux-gnu_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpxmaj_tb0/cpp-riscv64-linux-gnu_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 liblz4-1 riscv64 1.10.0-4 [85.8 kB] Fetched 85.8 kB in 0s (1472 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu_63n7ct/liblz4-1_1.10.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libmd0 riscv64 1.1.0-2+b1 [37.6 kB] Fetched 37.6 kB in 0s (670 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptlv4dqik/libmd0_1.1.0-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libsmartcols1 riscv64 2.41.2-4 [155 kB] Fetched 155 kB in 0s (2442 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6t52qky8/libsmartcols1_2.41.2-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libsystemd0 riscv64 258.1-1 [477 kB] Fetched 477 kB in 0s (5953 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg9cvayyp/libsystemd0_258.1-1_riscv64.deb' Downloading dependency 1 of 175: libk5crypto3:riscv64=1.21.3-5 Downloading dependency 2 of 175: g++-15-riscv64-linux-gnu:riscv64=15.2.0-4 Downloading dependency 3 of 175: bsdextrautils:riscv64=2.41.2-4 Downloading dependency 4 of 175: libstdc++-15-dev:riscv64=15.2.0-4 Downloading dependency 5 of 175: groff-base:riscv64=1.23.0-9 Downloading dependency 6 of 175: libubsan1:riscv64=15.2.0-4 Downloading dependency 7 of 175: libmagic1t64:riscv64=1:5.46-5 Downloading dependency 8 of 175: perl:riscv64=5.40.1-6 Downloading dependency 9 of 175: libjansson4:riscv64=2.14-2+b3 Downloading dependency 10 of 175: coreutils:riscv64=9.7-3 Downloading dependency 11 of 175: libnettle8t64:riscv64=3.10.2-1 Downloading dependency 12 of 175: libxxhash0:riscv64=0.8.3-2 Downloading dependency 13 of 175: libgdbm6t64:riscv64=1.26-1 Downloading dependency 14 of 175: base-files:riscv64=14 Downloading dependency 15 of 175: dpkg:riscv64=1.22.21 Downloading dependency 16 of 175: libexpat1:riscv64=2.7.3-1 Downloading dependency 17 of 175: libbrotli1:riscv64=1.1.0-2+b7 Downloading dependency 18 of 175: autopoint:riscv64=0.23.1-2 Downloading dependency 19 of 175: binutils-riscv64-linux-gnu:riscv64=2.45-7 Downloading dependency 20 of 175: libuchardet0:riscv64=0.0.8-2 Downloading dependency 21 of 175: hostname:riscv64=3.25 Downloading dependency 22 of 175: libbz2-1.0:riscv64=1.0.8-6 Downloading dependency 23 of 175: dash:riscv64=0.5.12-12 Downloading dependency 24 of 175: g++-15:riscv64=15.2.0-4 Downloading dependency 25 of 175: libssl3t64:riscv64=3.5.4-1 Downloading dependency 26 of 175: libdebhelper-perl:riscv64=13.28 Downloading dependency 27 of 175: gcc-15-riscv64-linux-gnu:riscv64=15.2.0-4 Downloading dependency 28 of 175: cpp-15-riscv64-linux-gnu:riscv64=15.2.0-4 Downloading dependency 29 of 175: libsasl2-modules-db:riscv64=2.1.28+dfsg1-10 Downloading dependency 30 of 175: libuuid1:riscv64=2.41.2-4 Downloading dependency 31 of 175: libhogweed6t64:riscv64=3.10.2-1 Downloading dependency 32 of 175: findutils:riscv64=4.10.0-3 Downloading dependency 33 of 175: libacl1:riscv64=2.3.2-2+b1 Downloading dependency 34 of 175: libnghttp2-14:riscv64=1.64.0-1.1+b1 Downloading dependency 35 of 175: libmagic-mgc:riscv64=1:5.46-5 Downloading dependency 36 of 175: perl-modules-5.40:riscv64=5.40.1-6 Downloading dependency 37 of 175: libstdc++6:riscv64=15.2.0-4 Downloading dependency 38 of 175: zlib1g:riscv64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 39 of 175: gcc-15:riscv64=15.2.0-4 Downloading dependency 40 of 175: libidn2-0:riscv64=2.3.8-4 Downloading dependency 41 of 175: xz-utils:riscv64=5.8.1-2 Downloading dependency 42 of 175: intltool-debian:riscv64=0.35.0+20060710.6 Downloading dependency 43 of 175: zlib1g-dev:riscv64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 44 of 175: libzstd1:riscv64=1.5.7+dfsg-2 Downloading dependency 45 of 175: libblkid1:riscv64=2.41.2-4 Downloading dependency 46 of 175: libtasn1-6:riscv64=4.20.0-2 Downloading dependency 47 of 175: libffi8:riscv64=3.5.2-2 Downloading dependency 48 of 175: libbinutils:riscv64=2.45-7 Downloading dependency 49 of 175: diffutils:riscv64=1:3.10-4 Downloading dependency 50 of 175: libcom-err2:riscv64=1.47.2-3+b3 Downloading dependency 51 of 175: libselinux1:riscv64=3.8.1-1 Downloading dependency 52 of 175: libcc1-0:riscv64=15.2.0-4 Downloading dependency 53 of 175: debconf:riscv64=1.5.91 Downloading dependency 54 of 175: libgdbm-compat4t64:riscv64=1.26-1 Downloading dependency 55 of 175: librhash1:riscv64=1.4.6-1 Downloading dependency 56 of 175: libgnutls30t64:riscv64=3.8.10-2 Downloading dependency 57 of 175: bash:riscv64=5.3-1 Downloading dependency 58 of 175: libgssapi-krb5-2:riscv64=1.21.3-5 Downloading dependency 59 of 175: libgcc-s1:riscv64=15.2.0-4 Downloading dependency 60 of 175: libgprofng0:riscv64=2.45-7 Downloading dependency 61 of 175: libtsan2:riscv64=15.2.0-4 Downloading dependency 62 of 175: libsasl2-2:riscv64=2.1.28+dfsg1-10 Downloading dependency 63 of 175: libdb5.3t64:riscv64=5.3.28+dfsg2-10 Downloading dependency 64 of 175: procps:riscv64=2:4.0.4-9 Downloading dependency 65 of 175: libctf-nobfd0:riscv64=2.45-7 Downloading dependency 66 of 175: libperl5.40:riscv64=5.40.1-6 Downloading dependency 67 of 175: libkrb5-3:riscv64=1.21.3-5 Downloading dependency 68 of 175: libngtcp2-16:riscv64=1.16.0-1 Downloading dependency 69 of 175: g++:riscv64=4:15.2.0-4 Downloading dependency 70 of 175: libarchive-zip-perl:riscv64=1.68-1 Downloading dependency 71 of 175: libp11-kit0:riscv64=0.25.9-2 Downloading dependency 72 of 175: perl-base:riscv64=5.40.1-6 Downloading dependency 73 of 175: autoconf:riscv64=2.72-3.1 Downloading dependency 74 of 175: libpcre2-8-0:riscv64=10.46-1 Downloading dependency 75 of 175: libsframe2:riscv64=2.45-7 Downloading dependency 76 of 175: libpsl5t64:riscv64=0.21.2-1.1+b1 Downloading dependency 77 of 175: libaudit-common:riscv64=1:4.1.2-1 Downloading dependency 78 of 175: po-debconf:riscv64=1.0.21+nmu1 Downloading dependency 79 of 175: libasan8:riscv64=15.2.0-4 Downloading dependency 80 of 175: ncurses-bin:riscv64=6.5+20250216-2 Downloading dependency 81 of 175: sysvinit-utils:riscv64=3.14-4 Downloading dependency 82 of 175: libcap-ng0:riscv64=0.8.5-4+b1 Downloading dependency 83 of 175: mawk:riscv64=1.3.4.20250131-1 Downloading dependency 84 of 175: patch:riscv64=2.8-2 Downloading dependency 85 of 175: tar:riscv64=1.35+dfsg-3.1 Downloading dependency 86 of 175: libcurl4t64:riscv64=8.16.0-4 Downloading dependency 87 of 175: init-system-helpers:riscv64=1.69 Downloading dependency 88 of 175: liblsan0:riscv64=15.2.0-4 Downloading dependency 89 of 175: libelf1t64:riscv64=0.193-3 Downloading dependency 90 of 175: build-essential:riscv64=12.12 Downloading dependency 91 of 175: debhelper:riscv64=13.28 Downloading dependency 92 of 175: libtinfo6:riscv64=6.5+20250216-2 Downloading dependency 93 of 175: cmake:riscv64=4.1.1+really3.31.6-2 Downloading dependency 94 of 175: libpam0g:riscv64=1.7.0-5 Downloading dependency 95 of 175: base-passwd:riscv64=3.6.7 Downloading dependency 96 of 175: rpcsvc-proto:riscv64=1.4.3-1+b2 Downloading dependency 97 of 175: libdebconfclient0:riscv64=0.280 Downloading dependency 98 of 175: automake:riscv64=1:1.18.1-2 Downloading dependency 99 of 175: gcc-15-base:riscv64=15.2.0-4 Downloading dependency 100 of 175: libcrypt-dev:riscv64=1:4.4.38-1 Downloading dependency 101 of 175: libldap2:riscv64=2.6.10+dfsg-1 Downloading dependency 102 of 175: libudev1:riscv64=258.1-1 Downloading dependency 103 of 175: libitm1:riscv64=15.2.0-4 Downloading dependency 104 of 175: libc-bin:riscv64=2.41-12 Downloading dependency 105 of 175: libproc2-0:riscv64=2:4.0.4-9 Downloading dependency 106 of 175: libcrypt1:riscv64=1:4.4.38-1 Downloading dependency 107 of 175: debianutils:riscv64=5.23.2 Downloading dependency 108 of 175: libmpfr6:riscv64=4.2.2-2 Downloading dependency 109 of 175: libuv1t64:riscv64=1.51.0-2 Downloading dependency 110 of 175: libfile-stripnondeterminism-perl:riscv64=1.15.0-1 Downloading dependency 111 of 175: librtmp1:riscv64=2.4+20151223.gitfa8646d.1-3 Downloading dependency 112 of 175: libngtcp2-crypto-ossl0:riscv64=1.16.0-1 Downloading dependency 113 of 175: libarchive13t64:riscv64=3.7.4-4+b1 Downloading dependency 114 of 175: liblzma5:riscv64=5.8.1-2 Downloading dependency 115 of 175: libattr1:riscv64=1:2.5.2-3 Downloading dependency 116 of 175: binutils:riscv64=2.45-7 Downloading dependency 117 of 175: libxml2-16:riscv64=2.14.6+dfsg-0.1 Downloading dependency 118 of 175: libncursesw6:riscv64=6.5+20250216-2 Downloading dependency 119 of 175: dh-strip-nondeterminism:riscv64=1.15.0-1 Downloading dependency 120 of 175: libkrb5support0:riscv64=1.21.3-5 Downloading dependency 121 of 175: man-db:riscv64=2.13.1-1 Downloading dependency 122 of 175: gettext:riscv64=0.23.1-2+b1 Downloading dependency 123 of 175: sensible-utils:riscv64=0.0.26 Downloading dependency 124 of 175: cpp-riscv64-linux-gnu:riscv64=4:15.2.0-4 Downloading dependency 125 of 175: liblz4-1:riscv64=1.10.0-4 Downloading dependency 126 of 175: libmd0:riscv64=1.1.0-2+b1 Downloading dependency 127 of 175: libsmartcols1:riscv64=2.41.2-4 Downloading dependency 128 of 175: libsystemd0:riscv64=258.1-1 Downloading dependency 129 of 175: ncurses-base:riscv64=6.5+20250216-2Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (3948 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz4p6j34y/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libc-dev-bin riscv64 2.41-12 [57.4 kB] Fetched 57.4 kB in 0s (1000 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw2bll4y8/libc-dev-bin_2.41-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libctf0 riscv64 2.45-7 [96.1 kB] Fetched 96.1 kB in 0s (1588 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuaxlclts/libctf0_2.45-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libnghttp3-9 riscv64 1.12.0-1 [68.4 kB] Fetched 68.4 kB in 0s (1185 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptnbmdpff/libnghttp3-9_1.12.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 gettext-base riscv64 0.23.1-2+b1 [243 kB] Fetched 243 kB in 0s (3576 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnf267cys/gettext-base_0.23.1-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 bzip2 riscv64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (733 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp52txuc4q/bzip2_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libaudit1 riscv64 1:4.1.2-1 [58.2 kB] Fetched 58.2 kB in 0s (1027 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpje9nftls/libaudit1_4.1.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-5 [558 kB] Fetched 558 kB in 0s (6652 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmptp4pb1u7/libgmp10_6.3.0+dfsg-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libunistring5 riscv64 1.3-2 [474 kB] Fetched 474 kB in 0s (5942 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwdccnd4r/libunistring5_1.3-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 file riscv64 1:5.46-5 [43.4 kB] Fetched 43.4 kB in 0s (767 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpiv66rdie/file_5.46-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libisl23 riscv64 0.27-1 [664 kB] Fetched 664 kB in 0s (7291 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx6ryhplg/libisl23_0.27-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 dwz riscv64 0.16-2 [115 kB] Fetched 115 kB in 0s (1871 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0ob6py4/dwz_0.16-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libpam-modules riscv64 1.7.0-5 [177 kB] Fetched 177 kB in 0s (2717 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_zf5ui9e/libpam-modules_1.7.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 cpp riscv64 4:15.2.0-4 [1572 B] Fetched 1572 B in 0s (29.4 kB/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmplri5hbe3/cpp_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libpam-modules-bin riscv64 1.7.0-5 [49.3 kB] Fetched 49.3 kB in 0s (868 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps8at34t_/libpam-modules-bin_1.7.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libcap2 riscv64 1:2.75-10+b1 [29.3 kB] Fetched 29.3 kB in 0s (510 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp8_ensyr2/libcap2_2.75-10+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libc6-dev riscv64 2.41-12 [3127 kB] Fetched 3127 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo9pja7dl/libc6-dev_2.41-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libatomic1 riscv64 15.2.0-4 [8532 B] Fetched 8532 B in 0s (150 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5k_wdkbm/libatomic1_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (7162 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8yu0kp8j/libdpkg-perl_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 gcc-riscv64-linux-gnu riscv64 4:15.2.0-4 [1432 B] Fetched 1432 B in 0s (26.6 kB/s) dpkg-name: info: moved 'gcc-riscv64-linux-gnu_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmp_9q4tidf/gcc-riscv64-linux-gnu_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 dh-autoreconf all 21 [12.2 kB] Fetched 12.2 kB in 0s (227 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxw7n4tk/dh-autoreconf_21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 linux-libc-dev all 6.16.12-1 [2547 kB] Fetched 2547 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpimk8myor/linux-libc-dev_6.16.12-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 m4 riscv64 1.4.20-2 [323 kB] Fetched 323 kB in 0s (4414 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfi_sx8h1/m4_1.4.20-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libkeyutils1 riscv64 1.6.3-6 [9480 B] Fetched 9480 B in 0s (176 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp09albxl0/libkeyutils1_1.6.3-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 make riscv64 4.4.1-2 [463 kB] Fetched 463 kB in 0s (5828 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps_7vja4h/make_4.4.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 openssl-provider-legacy riscv64 3.5.4-1 [310 kB] Fetched 310 kB in 0s (4329 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplitg48tt/openssl-provider-legacy_3.5.4-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 sed riscv64 4.9-2 [329 kB] Fetched 329 kB in 0s (4534 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpah5kiref/sed_4.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 cpp-15 riscv64 15.2.0-4 [1272 B] Fetched 1272 B in 0s (22.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj4lz6nbj/cpp-15_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libgomp1 riscv64 15.2.0-4 [131 kB] Fetched 131 kB in 0s (2093 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0yonxhv/libgomp1_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libgcc-15-dev riscv64 15.2.0-4 [5686 kB] Fetched 5686 kB in 0s (15.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf1b3gfk2/libgcc-15-dev_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (3542 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxgsn94e/libpam-runtime_1.7.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 gcc riscv64 4:15.2.0-4 [5156 B] Fetched 5156 B in 0s (94.8 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpqgc4rmlo/gcc_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (1037 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpss2q6558/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 util-linux riscv64 2.41.2-4 [1158 kB] Fetched 1158 kB in 0s (9781 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy0ws_fv9/util-linux_2.41.2-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libjsoncpp26 riscv64 1.9.6-4 [78.8 kB] Fetched 78.8 kB in 0s (1343 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv17ph38p/libjsoncpp26_1.9.6-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libpipeline1 riscv64 1.5.8-1 [40.3 kB] Fetched 40.3 kB in 0s (709 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy9eaixv6/libpipeline1_1.5.8-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Fetched 2268 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt41wepr7/cmake-data_4.1.1+really3.31.6-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libc6 riscv64 2.41-12 [2472 kB] Fetched 2472 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpycorr2ph/libc6_2.41-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 binutils-common riscv64 2.45-7 [2558 kB] Fetched 2558 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07hxts07/binutils-common_2.45-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 gzip riscv64 1.13-1 [139 kB] Fetched 139 kB in 0s (2219 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3o_z3tw6/gzip_1.13-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libmpc3 riscv64 1.3.1-2 [56.4 kB] Fetched 56.4 kB in 0s (984 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpt3vq35/libmpc3_1.3.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcfdf48ln/dpkg-dev_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libmount1 riscv64 2.41.2-4 [226 kB] Fetched 226 kB in 0s (3299 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6c5p2oyl/libmount1_2.41.2-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 g++-riscv64-linux-gnu riscv64 4:15.2.0-4 [1196 B] Fetched 1196 B in 0s (21.9 kB/s) dpkg-name: info: moved 'g++-riscv64-linux-gnu_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmp9mwl0gzv/g++-riscv64-linux-gnu_15.2.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 grep riscv64 3.12-1 [442 kB] Fetched 442 kB in 0s (5330 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6t_17br4/grep_3.12-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libssh2-1t64 riscv64 1.11.1-1 [249 kB] Fetched 249 kB in 0s (3713 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe95xdk4n/libssh2-1t64_1.11.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251017T144549Z sid/main riscv64 libtool all 2.5.4-5 [540 kB] Fetched 540 kB in 0s (6380 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphoyja9d8/libtool_2.5.4-5_all.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_riscv64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_riscv64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpyol080pg/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture riscv64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.1j4uhVSUzi as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.1j4uhVSUzi 127.0.0.1 - - [30/Oct/2025 01:34:14] code 404, message File not found 127.0.0.1 - - [30/Oct/2025 01:34:14] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:44299 ./ InRelease 127.0.0.1 - - [30/Oct/2025 01:34:14] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:44299 ./ Release [462 B] 127.0.0.1 - - [30/Oct/2025 01:34:14] code 404, message File not found 127.0.0.1 - - [30/Oct/2025 01:34:14] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:44299 ./ Release.gpg 127.0.0.1 - - [30/Oct/2025 01:34:14] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:44299 ./ Packages [220 kB] Fetched 220 kB in 0s (1699 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./gcc-15-base_15.2.0-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./libc6_2.41-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./libgcc-s1_15.2.0-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./mawk_1.3.4.20250131-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./base-files_14_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./libtinfo6_6.5%2b20250216-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./debianutils_5.23.2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./bash_5.3-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./libacl1_2.3.2-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./libattr1_2.5.2-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./libcap2_2.75-10%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:15] "GET /./libgmp10_6.3.0%2bdfsg-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./libpcre2-8-0_10.46-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./libselinux1_3.8.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./libzstd1_1.5.7%2bdfsg-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./libssl3t64_3.5.4-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./openssl-provider-legacy_3.5.4-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./libsystemd0_258.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./coreutils_9.7-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./dash_0.5.12-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./diffutils_3.10-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./libbz2-1.0_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./liblzma5_5.8.1-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./libmd0_1.1.0-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./tar_1.35%2bdfsg-3.1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./dpkg_1.22.21_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:16] "GET /./findutils_4.10.0-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:17] "GET /./grep_3.12-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:17] "GET /./gzip_1.13-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:17] "GET /./hostname_3.25_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:17] "GET /./ncurses-bin_6.5%2b20250216-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:34:17] "GET /./libcrypt1_4.4.38-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - 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127.0.0.1 - - [30/Oct/2025 01:34:17] "GET /./sysvinit-utils_3.14-4_riscv64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.1j4uhVSUzi 127.0.0.1 - - [30/Oct/2025 01:34:25] code 404, message File not found 127.0.0.1 - - [30/Oct/2025 01:34:25] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:44299 ./ InRelease 127.0.0.1 - - [30/Oct/2025 01:34:25] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:44299 ./ Release 127.0.0.1 - - [30/Oct/2025 01:34:25] code 404, message File not found 127.0.0.1 - - [30/Oct/2025 01:34:25] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:44299 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [30/Oct/2025 01:35:21] "GET /./libnettle8t64_3.10.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:21] "GET /./libxml2-16_2.14.6%2bdfsg-0.1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:21] "GET /./libarchive13t64_3.7.4-4%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libnghttp3-9_1.12.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libngtcp2-16_1.16.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libbrotli1_1.1.0-2%2bb7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libkrb5support0_1.21.3-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libcom-err2_1.47.2-3%2bb3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libk5crypto3_1.21.3-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libkeyutils1_1.6.3-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libkrb5-3_1.21.3-5_riscv64.deb HTTP/1.1" 200 - 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- [30/Oct/2025 01:35:22] "GET /./libffi8_3.5.2-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libp11-kit0_0.25.9-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libtasn1-6_4.20.0-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libgnutls30t64_3.8.10-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./librtmp1_2.4%2b20151223.gitfa8646d.1-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libssh2-1t64_1.11.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libcurl4t64_8.16.0-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libjsoncpp26_1.9.6-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./librhash1_1.4.6-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./libuv1t64_1.51.0-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:22] "GET /./cmake_4.1.1%2breally3.31.6-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./libdebhelper-perl_13.28_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./libtool_2.5.4-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./dh-autoreconf_21_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./libarchive-zip-perl_1.68-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./libfile-stripnondeterminism-perl_1.15.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./dh-strip-nondeterminism_1.15.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./libelf1t64_0.193-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./dwz_0.16-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./gettext_0.23.1-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./po-debconf_1.0.21%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:23] "GET /./debhelper_13.28_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:24] "GET /./zlib1g-dev_1.3.dfsg%2breally1.3.1-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [30/Oct/2025 01:35:24] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpyol080pg/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.1j4uhVSUzi Reading package lists... Building dependency tree... Reading state information... libk5crypto3 is already the newest version (1.21.3-5). libk5crypto3 set to manually installed. g++-15-riscv64-linux-gnu is already the newest version (15.2.0-4). g++-15-riscv64-linux-gnu set to manually installed. bsdextrautils is already the newest version (2.41.2-4). bsdextrautils set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-4). libstdc++-15-dev set to manually installed. groff-base is already the newest version (1.23.0-9). groff-base set to manually installed. libubsan1 is already the newest version (15.2.0-4). libubsan1 set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. perl is already the newest version (5.40.1-6). perl set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. coreutils is already the newest version (9.7-3). libnettle8t64 is already the newest version (3.10.2-1). libnettle8t64 set to manually installed. libxxhash0 is already the newest version (0.8.3-2). libxxhash0 set to manually installed. libgdbm6t64 is already the newest version (1.26-1). libgdbm6t64 set to manually installed. base-files is already the newest version (14). dpkg is already the newest version (1.22.21). libexpat1 is already the newest version (2.7.3-1). libexpat1 set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. autopoint is already the newest version (0.23.1-2). autopoint set to manually installed. binutils-riscv64-linux-gnu is already the newest version (2.45-7). binutils-riscv64-linux-gnu set to manually installed. libuchardet0 is already the newest version (0.0.8-2). libuchardet0 set to manually installed. hostname is already the newest version (3.25). libbz2-1.0 is already the newest version (1.0.8-6). dash is already the newest version (0.5.12-12). g++-15 is already the newest version (15.2.0-4). g++-15 set to manually installed. libssl3t64 is already the newest version (3.5.4-1). libdebhelper-perl is already the newest version (13.28). libdebhelper-perl set to manually installed. gcc-15-riscv64-linux-gnu is already the newest version (15.2.0-4). gcc-15-riscv64-linux-gnu set to manually installed. cpp-15-riscv64-linux-gnu is already the newest version (15.2.0-4). cpp-15-riscv64-linux-gnu set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-10). libsasl2-modules-db set to manually installed. libuuid1 is already the newest version (2.41.2-4). libhogweed6t64 is already the newest version (3.10.2-1). libhogweed6t64 set to manually installed. findutils is already the newest version (4.10.0-3). libacl1 is already the newest version (2.3.2-2+b1). libnghttp2-14 is already the newest version (1.64.0-1.1+b1). libnghttp2-14 set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-6). perl-modules-5.40 set to manually installed. libstdc++6 is already the newest version (15.2.0-4). libstdc++6 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). gcc-15 is already the newest version (15.2.0-4). gcc-15 set to manually installed. libidn2-0 is already the newest version (2.3.8-4). libidn2-0 set to manually installed. xz-utils is already the newest version (5.8.1-2). xz-utils set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-2). libblkid1 is already the newest version (2.41.2-4). libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. libffi8 is already the newest version (3.5.2-2). libffi8 set to manually installed. libbinutils is already the newest version (2.45-7). libbinutils set to manually installed. diffutils is already the newest version (1:3.10-4). libcom-err2 is already the newest version (1.47.2-3+b3). libcom-err2 set to manually installed. libselinux1 is already the newest version (3.8.1-1). libcc1-0 is already the newest version (15.2.0-4). libcc1-0 set to manually installed. debconf is already the newest version (1.5.91). libgdbm-compat4t64 is already the newest version (1.26-1). libgdbm-compat4t64 set to manually installed. librhash1 is already the newest version (1.4.6-1). librhash1 set to manually installed. libgnutls30t64 is already the newest version (3.8.10-2). libgnutls30t64 set to manually installed. bash is already the newest version (5.3-1). libgssapi-krb5-2 is already the newest version (1.21.3-5). libgssapi-krb5-2 set to manually installed. libgcc-s1 is already the newest version (15.2.0-4). libgprofng0 is already the newest version (2.45-7). libgprofng0 set to manually installed. libtsan2 is already the newest version (15.2.0-4). libtsan2 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-10). libsasl2-2 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-10). procps is already the newest version (2:4.0.4-9). procps set to manually installed. libctf-nobfd0 is already the newest version (2.45-7). libctf-nobfd0 set to manually installed. libperl5.40 is already the newest version (5.40.1-6). libperl5.40 set to manually installed. libkrb5-3 is already the newest version (1.21.3-5). libkrb5-3 set to manually installed. libngtcp2-16 is already the newest version (1.16.0-1). libngtcp2-16 set to manually installed. g++ is already the newest version (4:15.2.0-4). g++ set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libp11-kit0 is already the newest version (0.25.9-2). libp11-kit0 set to manually installed. perl-base is already the newest version (5.40.1-6). autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libpcre2-8-0 is already the newest version (10.46-1). libsframe2 is already the newest version (2.45-7). libsframe2 set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libasan8 is already the newest version (15.2.0-4). libasan8 set to manually installed. ncurses-bin is already the newest version (6.5+20250216-2). sysvinit-utils is already the newest version (3.14-4). libcap-ng0 is already the newest version (0.8.5-4+b1). mawk is already the newest version (1.3.4.20250131-1). patch is already the newest version (2.8-2). patch set to manually installed. tar is already the newest version (1.35+dfsg-3.1). libcurl4t64 is already the newest version (8.16.0-4). libcurl4t64 set to manually installed. init-system-helpers is already the newest version (1.69). liblsan0 is already the newest version (15.2.0-4). liblsan0 set to manually installed. libelf1t64 is already the newest version (0.193-3). libelf1t64 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. debhelper is already the newest version (13.28). debhelper set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). cmake is already the newest version (4.1.1+really3.31.6-2). cmake set to manually installed. libpam0g is already the newest version (1.7.0-5). base-passwd is already the newest version (3.6.7). rpcsvc-proto is already the newest version (1.4.3-1+b2). rpcsvc-proto set to manually installed. libdebconfclient0 is already the newest version (0.280). automake is already the newest version (1:1.18.1-2). automake set to manually installed. gcc-15-base is already the newest version (15.2.0-4). libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. libudev1 is already the newest version (258.1-1). libitm1 is already the newest version (15.2.0-4). libitm1 set to manually installed. libc-bin is already the newest version (2.41-12). libproc2-0 is already the newest version (2:4.0.4-9). libproc2-0 set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). debianutils is already the newest version (5.23.2). libmpfr6 is already the newest version (4.2.2-2). libmpfr6 set to manually installed. libuv1t64 is already the newest version (1.51.0-2). libuv1t64 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp1 set to manually installed. libngtcp2-crypto-ossl0 is already the newest version (1.16.0-1). libngtcp2-crypto-ossl0 set to manually installed. libarchive13t64 is already the newest version (3.7.4-4+b1). libarchive13t64 set to manually installed. liblzma5 is already the newest version (5.8.1-2). libattr1 is already the newest version (1:2.5.2-3). binutils is already the newest version (2.45-7). binutils set to manually installed. libxml2-16 is already the newest version (2.14.6+dfsg-0.1). libxml2-16 set to manually installed. libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. libkrb5support0 is already the newest version (1.21.3-5). libkrb5support0 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. gettext is already the newest version (0.23.1-2+b1). gettext set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. cpp-riscv64-linux-gnu is already the newest version (4:15.2.0-4). cpp-riscv64-linux-gnu set to manually installed. liblz4-1 is already the newest version (1.10.0-4). liblz4-1 set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). libsmartcols1 is already the newest version (2.41.2-4). libsystemd0 is already the newest version (258.1-1). ncurses-base is already the newest version (6.5+20250216-2). libc-dev-bin is already the newest version (2.41-12). libc-dev-bin set to manually installed. libctf0 is already the newest version (2.45-7). libctf0 set to manually installed. libnghttp3-9 is already the newest version (1.12.0-1). libnghttp3-9 set to manually installed. gettext-base is already the newest version (0.23.1-2+b1). gettext-base set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. libaudit1 is already the newest version (1:4.1.2-1). libgmp10 is already the newest version (2:6.3.0+dfsg-5). libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. dwz is already the newest version (0.16-2). dwz set to manually installed. libpam-modules is already the newest version (1.7.0-5). cpp is already the newest version (4:15.2.0-4). cpp set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). libcap2 is already the newest version (1:2.75-10+b1). libc6-dev is already the newest version (2.41-12). libc6-dev set to manually installed. libatomic1 is already the newest version (15.2.0-4). libatomic1 set to manually installed. libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. gcc-riscv64-linux-gnu is already the newest version (4:15.2.0-4). gcc-riscv64-linux-gnu set to manually installed. dh-autoreconf is already the newest version (21). dh-autoreconf set to manually installed. linux-libc-dev is already the newest version (6.16.12-1). linux-libc-dev set to manually installed. m4 is already the newest version (1.4.20-2). m4 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6). libkeyutils1 set to manually installed. make is already the newest version (4.4.1-2). make set to manually installed. openssl-provider-legacy is already the newest version (3.5.4-1). sed is already the newest version (4.9-2). cpp-15 is already the newest version (15.2.0-4). cpp-15 set to manually installed. libgomp1 is already the newest version (15.2.0-4). libgomp1 set to manually installed. libgcc-15-dev is already the newest version (15.2.0-4). libgcc-15-dev set to manually installed. libpam-runtime is already the newest version (1.7.0-5). gcc is already the newest version (4:15.2.0-4). gcc set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. util-linux is already the newest version (2.41.2-4). libjsoncpp26 is already the newest version (1.9.6-4). libjsoncpp26 set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. cmake-data is already the newest version (4.1.1+really3.31.6-2). cmake-data set to manually installed. libc6 is already the newest version (2.41-12). binutils-common is already the newest version (2.45-7). binutils-common set to manually installed. gzip is already the newest version (1.13-1). libmpc3 is already the newest version (1.3.1-2). libmpc3 set to manually installed. dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. libmount1 is already the newest version (2.41.2-4). g++-riscv64-linux-gnu is already the newest version (4:15.2.0-4). g++-riscv64-linux-gnu set to manually installed. grep is already the newest version (3.12-1). libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. libtool is already the newest version (2.5.4-5). libtool set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.1j4uhVSUzi (Reading database ... 17869 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.1j4uhVSUzi I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.1j4uhVSUzi I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.1j4uhVSUzi... I: success in 250.8763 seconds Downloading dependency 130 of 175: libc-dev-bin:riscv64=2.41-12 Downloading dependency 131 of 175: libctf0:riscv64=2.45-7 Downloading dependency 132 of 175: libnghttp3-9:riscv64=1.12.0-1 Downloading dependency 133 of 175: gettext-base:riscv64=0.23.1-2+b1 Downloading dependency 134 of 175: bzip2:riscv64=1.0.8-6 Downloading dependency 135 of 175: libaudit1:riscv64=1:4.1.2-1 Downloading dependency 136 of 175: libgmp10:riscv64=2:6.3.0+dfsg-5 Downloading dependency 137 of 175: libunistring5:riscv64=1.3-2 Downloading dependency 138 of 175: file:riscv64=1:5.46-5 Downloading dependency 139 of 175: libisl23:riscv64=0.27-1 Downloading dependency 140 of 175: dwz:riscv64=0.16-2 Downloading dependency 141 of 175: libpam-modules:riscv64=1.7.0-5 Downloading dependency 142 of 175: cpp:riscv64=4:15.2.0-4 Downloading dependency 143 of 175: libpam-modules-bin:riscv64=1.7.0-5 Downloading dependency 144 of 175: libcap2:riscv64=1:2.75-10+b1 Downloading dependency 145 of 175: libc6-dev:riscv64=2.41-12 Downloading dependency 146 of 175: libatomic1:riscv64=15.2.0-4 Downloading dependency 147 of 175: libdpkg-perl:riscv64=1.22.21 Downloading dependency 148 of 175: gcc-riscv64-linux-gnu:riscv64=4:15.2.0-4 Downloading dependency 149 of 175: dh-autoreconf:riscv64=21 Downloading dependency 150 of 175: linux-libc-dev:riscv64=6.16.12-1 Downloading dependency 151 of 175: m4:riscv64=1.4.20-2 Downloading dependency 152 of 175: libkeyutils1:riscv64=1.6.3-6 Downloading dependency 153 of 175: make:riscv64=4.4.1-2 Downloading dependency 154 of 175: openssl-provider-legacy:riscv64=3.5.4-1 Downloading dependency 155 of 175: sed:riscv64=4.9-2 Downloading dependency 156 of 175: cpp-15:riscv64=15.2.0-4 Downloading dependency 157 of 175: libgomp1:riscv64=15.2.0-4 Downloading dependency 158 of 175: libgcc-15-dev:riscv64=15.2.0-4 Downloading dependency 159 of 175: libpam-runtime:riscv64=1.7.0-5 Downloading dependency 160 of 175: gcc:riscv64=4:15.2.0-4 Downloading dependency 161 of 175: autotools-dev:riscv64=20240727.1 Downloading dependency 162 of 175: util-linux:riscv64=2.41.2-4 Downloading dependency 163 of 175: libjsoncpp26:riscv64=1.9.6-4 Downloading dependency 164 of 175: libpipeline1:riscv64=1.5.8-1 Downloading dependency 165 of 175: cmake-data:riscv64=4.1.1+really3.31.6-2 Downloading dependency 166 of 175: libc6:riscv64=2.41-12 Downloading dependency 167 of 175: binutils-common:riscv64=2.45-7 Downloading dependency 168 of 175: gzip:riscv64=1.13-1 Downloading dependency 169 of 175: libmpc3:riscv64=1.3.1-2 Downloading dependency 170 of 175: dpkg-dev:riscv64=1.22.21 Downloading dependency 171 of 175: libmount1:riscv64=2.41.2-4 Downloading dependency 172 of 175: g++-riscv64-linux-gnu:riscv64=4:15.2.0-4 Downloading dependency 173 of 175: grep:riscv64=3.12-1 Downloading dependency 174 of 175: libssh2-1t64:riscv64=1.11.1-1 Downloading dependency 175 of 175: libtool:riscv64=2.5.4-5 env --chdir=/srv/rebuilderd/tmp/rebuilderdkVcisA/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1760694269 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildhWDC2j/debrebuild.sbuildrc.GTcyZ3Qlmizg sbuild --build=riscv64 --host=riscv64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildhWDC2j/debrebuild.tar.aANc5hq16Enz --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=diamond-aligner-2.1.14 /srv/rebuilderd/tmp/rebuilderdkVcisA/inputs/diamond-aligner_2.1.14-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on localhost +==============================================================================+ | diamond-aligner 2.1.14-1 (riscv64) Wed, 29 Oct 2025 17:38:27 +0000 | +==============================================================================+ Package: diamond-aligner Version: 2.1.14-1 Source Version: 2.1.14-1 Distribution: unstable Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildhWDC2j/debrebuild.tar.aANc5hq16Enz to /srv/rebuilderd/tmp/tmp.sbuild.yVeY3Amm5Y... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Wed, 29 Oct 2025 17:39:29 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdkVcisA/inputs/diamond-aligner_2.1.14-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdkVcisA/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 29 Oct 2025 17:39:40 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-0qJtTy/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Wed, 29 Oct 2025 17:40:05 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any-amd64 arm64 ppc64el s390x ia64 ppc64 riscv64 sparc64 loong64) +------------------------------------------------------------------------------+ | Build environment Wed, 29 Oct 2025 17:40:13 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.43+deb13-riscv64 #1 SMP Debian 6.12.43-1 (2025-08-27) riscv64 (riscv64) Toolchain package versions: binutils_2.45-7 dpkg-dev_1.22.21 g++-15_15.2.0-4 gcc-15_15.2.0-4 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-4 libstdc++6_15.2.0-4 linux-libc-dev_6.16.12-1 Package versions: autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 binutils_2.45-7 binutils-common_2.45-7 binutils-riscv64-linux-gnu_2.45-7 bsdextrautils_2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 cmake_4.1.1+really3.31.6-2 cmake-data_4.1.1+really3.31.6-2 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-4 cpp-15-riscv64-linux-gnu_15.2.0-4 cpp-riscv64-linux-gnu_4:15.2.0-4 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.10-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-4 g++-15-riscv64-linux-gnu_15.2.0-4 g++-riscv64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-4 gcc-15-base_15.2.0-4 gcc-15-riscv64-linux-gnu_15.2.0-4 gcc-riscv64-linux-gnu_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-4+b1 libasan8_15.2.0-4 libatomic1_15.2.0-4 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-7 libblkid1_2.41.2-4 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-4 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-7 libctf0_2.45-7 libcurl4t64_8.16.0-4 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.280 libdebhelper-perl_13.28 libdpkg-perl_1.22.21 libelf1t64_0.193-3 libexpat1_2.7.3-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-4 libgcc-s1_15.2.0-4 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp10_2:6.3.0+dfsg-5 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-4 libgprofng0_2.45-7 libgssapi-krb5-2_1.21.3-5 libhogweed6t64_3.10.2-1 libidn2-0_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-4 libjansson4_2.14-2+b3 libjsoncpp26_1.9.6-4 libk5crypto3_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5support0_1.21.3-5 libldap2_2.6.10+dfsg-1 liblsan0_15.2.0-4 liblz4-1_1.10.0-4 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-ossl0_1.16.0-1 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libproc2-0_2:4.0.4-9 libpsl5t64_0.21.2-1.1+b1 librhash1_1.4.6-1 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libselinux1_3.8.1-1 libsframe2_2.45-7 libsmartcols1_2.41.2-4 libssh2-1t64_1.11.1-1 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-4 libstdc++6_15.2.0-4 libsystemd0_258.1-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-5 libtsan2_15.2.0-4 libubsan1_15.2.0-4 libuchardet0_0.0.8-2 libudev1_258.1-1 libunistring5_1.3-2 libuuid1_2.41.2-4 libuv1t64_1.51.0-2 libxml2-16_2.14.6+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.16.12-1 m4_1.4.20-2 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.4-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 rpcsvc-proto_1.4.3-1+b2 sed_4.9-2 sensible-utils_0.0.26 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Wed, 29 Oct 2025 17:40:13 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: diamond-aligner Binary: diamond-aligner Architecture: any-amd64 arm64 ppc64el s390x ia64 ppc64 riscv64 sparc64 loong64 Version: 2.1.14-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier , Homepage: https://github.com/bbuchfink/diamond Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/diamond-aligner Vcs-Git: https://salsa.debian.org/med-team/diamond-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev Package-List: diamond-aligner deb science optional arch=any-amd64,arm64,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,loong64 Checksums-Sha1: 90f78701e05f579d516e1d0b12fafd3c9fc64290 1752971 diamond-aligner_2.1.14.orig.tar.gz a51d0374c81ae6969fb2543ec546d6f45de250d3 137012 diamond-aligner_2.1.14-1.debian.tar.xz Checksums-Sha256: 46ad0ded90128d55efc10641d60fa40eeb423a9a0bffd9f5997a7b72e056b011 1752971 diamond-aligner_2.1.14.orig.tar.gz 22b439d0d1bb276c17d56fe419ab6d71f3cfcec7d71951465bc46b2d1889a8fe 137012 diamond-aligner_2.1.14-1.debian.tar.xz Files: 768080b6691f89c8f836ec2dfeeab199 1752971 diamond-aligner_2.1.14.orig.tar.gz f33b4b8712988ac90d6a5fe0c6a8110c 137012 diamond-aligner_2.1.14-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmjyEckRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHB2Q/+JLhKMYU6UXp45SthVuBBGxy3dhrRQ+VO I5iv0hbcMnPjkoXEZqFXrVK22SMMOIwNZr3hpHySLlDlMlPdWR9P/a5HlRfsYe65 8pJA/BAiuEVO2zRQFZp+Bo0Sx7ury8/TOm3USxGg4Fo22XbOawd/yktA3DeoPGrV qk2tJMpZGN2n4gvHqLuX8uJQd1ueulyutsaTuiWfkUTjAGitdI13PWcXVEpMQjKd hU3NhFfmqLgr9DXo/Wzn3+/Er/BDn7rLbZjEoWJYh7zt/esJuVhDQXz4GB7Qgkfj 8cUBX/QVIVlmyBZoNMo6fvx1eufB37DdrcjapFFgaEJ7LvZ4H9+1ihSI8rYEbkg7 GZRvep3jlCQVv+Yh7wZIDkia4O8M+Xd/OWUhcKkX41+Es0aFBGt1U7wg1xJVDY3R djL0ED85uaZZ5Ra+FZRmLbG6oqcArX93ssRZ+hYcpPyUqzBYNbs7ap9I8YL1jsdJ C+wQhLENv6hQEKyfkHbu76UCxRIKDJDE2bTjxqHm3pMg66JYh7orfbEGqb+M55e5 D3DknyDVqwgs9lBG6bHLQri6iCS7yE6p24erDW7ysX1Kx6pY4TnmCOYozXJD3MJz VhIjO4kkzSnMxh87LiBg43DrMza6a+nznSSzRKKVLB0uWOQjaN9YyIm3mLNuZ2a+ UV4ZXkCyXUM= =bmum -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.14-1.dsc: unsupported subcommand dpkg-source: info: extracting diamond-aligner in /build/reproducible-path/diamond-aligner-2.1.14 dpkg-source: info: unpacking diamond-aligner_2.1.14.orig.tar.gz dpkg-source: info: unpacking diamond-aligner_2.1.14-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1760694269 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.14-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14' dh_auto_configure -- -DX86=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_POLICY_VERSION_MINIMUM=3.5 cd obj-riscv64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/riscv64-linux-gnu -DX86=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of int -- Check size of int - done -- Performing Test HAS_GNUPP14 -- Performing Test HAS_GNUPP14 - Success -- Performing Test HAS_GNUPP17 -- Performing Test HAS_GNUPP17 - Success -- Performing Test HAS_GNUPP20 -- Performing Test HAS_GNUPP20 - Success -- Looking for sysinfo -- Looking for sysinfo - found -- Found ZLIB: /usr/lib/riscv64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (14.2s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR CMAKE_POLICY_VERSION_MINIMUM FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14' dh_auto_build -a cd obj-riscv64-linux-gnu && make -j4 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.14 -B/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu/CMakeFiles /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.14 /build/reproducible-path/diamond-aligner-2.1.14 /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu/CMakeFiles/arch_generic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' [ 2%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o [ 2%] Building CXX object CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o [ 2%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o [ 2%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/dp/swipe/banded_3frame_swipe.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o -MF CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o.d -o CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/search/stage1_2.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o -MF CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o.d -o CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/tools/benchmark.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/dp/swipe/swipe_wrapper.cpp [ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/masking/tantan.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/Core:369, from /build/reproducible-path/diamond-aligner-2.1.14/src/masking/tantan.cpp:27: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h: In instantiation of ‘static void Eigen_GENERIC::PlainObjectBase::_check_template_params() [with Derived = Eigen_GENERIC::Array]’: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Array.h:134:35: required from ‘Eigen_GENERIC::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array() [with _Scalar = float; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ 134 | Base::_check_template_params(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/c++/15/array:102:12: required from here 102 | struct array | ^~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ‘Eigen_GENERIC::PlainObjectBase >::’ and ‘Eigen_GENERIC::StorageOptions’ is deprecated [-Wdeprecated-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: in definition of macro ‘EIGEN_STATIC_ASSERT’ 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:28: note: in expansion of macro ‘EIGEN_IMPLIES’ 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ^~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ‘Eigen_GENERIC::PlainObjectBase >::’ and ‘Eigen_GENERIC::StorageOptions’ is deprecated [-Wdeprecated-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: in definition of macro ‘EIGEN_STATIC_ASSERT’ 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:28: note: in expansion of macro ‘EIGEN_IMPLIES’ 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ^~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h: In instantiation of ‘static void Eigen_GENERIC::PlainObjectBase::_check_template_params() [with Derived = Eigen_GENERIC::Array]’: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Array.h:170:35: required from ‘Eigen_GENERIC::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const T&) [with T = double; _Scalar = float; int _Rows = 50; int _Cols = 1; int _Options = 0; int _MaxRows = 50; int _MaxCols = 1]’ 170 | Base::_check_template_params(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/diamond-aligner-2.1.14/src/masking/tantan.cpp:61:31: required from here 61 | Array f(0.0), d, t; | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ‘Eigen_GENERIC::PlainObjectBase >::’ and ‘Eigen_GENERIC::StorageOptions’ is deprecated [-Wdeprecated-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: in definition of macro ‘EIGEN_STATIC_ASSERT’ 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:28: note: in expansion of macro ‘EIGEN_IMPLIES’ 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ^~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ‘Eigen_GENERIC::PlainObjectBase >::’ and ‘Eigen_GENERIC::StorageOptions’ is deprecated [-Wdeprecated-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: in definition of macro ‘EIGEN_STATIC_ASSERT’ 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:28: note: in expansion of macro ‘EIGEN_IMPLIES’ 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ^~~~~~~~~~~~~ [ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/dp/scan_diags.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 4%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/dp/ungapped_simd.cpp [ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/dp/swipe/anchored_wrapper.cpp [ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/dp/score_profile.cpp In file included from /usr/include/c++/15/bits/stl_pair.h:65, from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/list:64, from /build/reproducible-path/diamond-aligner-2.1.14/src/dp/swipe/swipe_wrapper.cpp:22: In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1051:43, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:91:17, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript 2 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ In file included from /build/reproducible-path/diamond-aligner-2.1.14/src/dp/swipe/banded_swipe.h:29, from /build/reproducible-path/diamond-aligner-2.1.14/src/dp/swipe/swipe_wrapper.cpp:38: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 8 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1051:43, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:91:17, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript [16, 1152921504606846974] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [64, 4611686018427387896] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1053:35, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:91:17, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript 3 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 12 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1053:35, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:91:17, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript [17, 1152921504606846975] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [68, 4611686018427387900] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1053:35, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:93:14, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript [17, 1152921504606846975] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [68, 4611686018427387900] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1053:35, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:93:14, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript [17, 1152921504606846975] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [68, 4611686018427387900] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1053:35, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:100:22, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript 3 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 12 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1053:35, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:102:22, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript [17, 1152921504606846975] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [68, 4611686018427387900] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In file included from /usr/include/c++/15/bits/stl_pair.h:61: In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:326:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:105:16, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:237:11: warning: array subscript [16, 1152921504606846974] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [64, 4611686018427387896] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:327:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:105:16, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:236:11: warning: array subscript [17, 1152921504606846975] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 236 | __a = _GLIBCXX_MOVE(__b); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [68, 4611686018427387900] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:327:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:105:16, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:237:11: warning: array subscript [17, 1152921504606846975] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [68, 4611686018427387900] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:326:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:101:16, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:237:11: warning: array subscript 2 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 8 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:327:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:101:16, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:236:11: warning: array subscript 3 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 236 | __a = _GLIBCXX_MOVE(__b); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 12 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:327:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:101:16, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:237:11: warning: array subscript 3 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 12 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1053:35, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:95:19, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript 3 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 12 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:326:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:98:20, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:237:11: warning: array subscript 2 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 8 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:327:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:98:20, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:236:11: warning: array subscript 3 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 236 | __a = _GLIBCXX_MOVE(__b); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 12 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:327:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:98:20, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:237:11: warning: array subscript 3 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 12 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:326:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:94:20, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:237:11: warning: array subscript [16, 1152921504606846974] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [64, 4611686018427387896] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:327:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:94:20, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:236:11: warning: array subscript [17, 1152921504606846975] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 236 | __a = _GLIBCXX_MOVE(__b); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [68, 4611686018427387900] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In function ‘constexpr std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = int]’, inlined from ‘constexpr void std::pair<_T1, _T2>::swap(std::pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:327:6, inlined from ‘constexpr typename std::enable_if, std::__is_swappable<_T2> >::value>::type std::swap(pair<_T1, _T2>&, pair<_T1, _T2>&) [with _T1 = int; _T2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1123:15, inlined from ‘constexpr void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = pair*; _ForwardIterator2 = pair*]’ at /usr/include/c++/15/bits/stl_algobase.h:186:11, inlined from ‘constexpr void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:94:20, inlined from ‘constexpr _RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1856:34, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1890:38, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/move.h:237:11: warning: array subscript [17, 1152921504606846975] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 237 | __b = _GLIBCXX_MOVE(__tmp); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [68, 4611686018427387900] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::pair<_T1, _T2>&&) requires _S_assignable<_T1, _T2>() [with _T1 = int; _T2 = int]’, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:241:29, inlined from ‘constexpr void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:356:22, inlined from ‘constexpr void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1594:23, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1869:25, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/stl_pair.h:626:46: warning: array subscript [15, 1152921504606846973] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 626 | first = std::forward(__p.first); | ~~~~^~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [120, 9223372036854775784] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::pair<_T1, _T2>&&) requires _S_assignable<_T1, _T2>() [with _T1 = int; _T2 = int]’, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:241:29, inlined from ‘constexpr void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:356:22, inlined from ‘constexpr void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1594:23, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1869:25, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/stl_pair.h:626:15: warning: array subscript [7, 576460752303423486] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 626 | first = std::forward(__p.first); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [56, 4611686018427387888] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::pair<_T1, _T2>&&) requires _S_assignable<_T1, _T2>() [with _T1 = int; _T2 = int]’, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:241:29, inlined from ‘constexpr void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:356:22, inlined from ‘constexpr void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1594:23, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1869:25, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/stl_pair.h:627:48: warning: array subscript [15, 1152921504606846973] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 627 | second = std::forward(__p.second); | ~~~~^~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [120, 9223372036854775784] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::pair<_T1, _T2>&&) requires _S_assignable<_T1, _T2>() [with _T1 = int; _T2 = int]’, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:241:29, inlined from ‘constexpr void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:356:22, inlined from ‘constexpr void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1594:23, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1869:25, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/stl_pair.h:627:16: warning: array subscript [7, 576460752303423486] is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 627 | second = std::forward(__p.second); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset [56, 4611686018427387888] into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::pair<_T1, _T2>&&) requires _S_assignable<_T1, _T2>() [with _T1 = int; _T2 = int]’, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:241:29, inlined from ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:264:25, inlined from ‘constexpr void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:425:19, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1870:23, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/stl_pair.h:626:46: warning: array subscript 1 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 626 | first = std::forward(__p.first); | ~~~~^~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 8 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::pair<_T1, _T2>&&) requires _S_assignable<_T1, _T2>() [with _T1 = int; _T2 = int]’, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:241:29, inlined from ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:264:25, inlined from ‘constexpr void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:425:19, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1870:23, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/stl_pair.h:627:48: warning: array subscript 1 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 627 | second = std::forward(__p.second); | ~~~~^~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 8 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::pair<_T1, _T2>&&) requires _S_assignable<_T1, _T2>() [with _T1 = int; _T2 = int]’, inlined from ‘constexpr void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_val]’ at /usr/include/c++/15/bits/stl_heap.h:142:29, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:247:23, inlined from ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:264:25, inlined from ‘constexpr void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:425:19, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1870:23, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/stl_pair.h:626:15: warning: array subscript 1 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 626 | first = std::forward(__p.first); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 8 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr std::pair<_T1, _T2>& std::pair<_T1, _T2>::operator=(std::pair<_T1, _T2>&&) requires _S_assignable<_T1, _T2>() [with _T1 = int; _T2 = int]’, inlined from ‘constexpr void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_val]’ at /usr/include/c++/15/bits/stl_heap.h:142:29, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:247:23, inlined from ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:264:25, inlined from ‘constexpr void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:425:19, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1870:23, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/bits/stl_pair.h:627:16: warning: array subscript 1 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 627 | second = std::forward(__p.second); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 8 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1051:43, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:232:14, inlined from ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:264:25, inlined from ‘constexpr void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:425:19, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1870:23, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript 2 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 8 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1053:35, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:232:14, inlined from ‘constexpr void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:264:25, inlined from ‘constexpr void std::__sort_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:425:19, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1870:23, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript 3 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 12 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1051:43, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:232:14, inlined from ‘constexpr void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:356:22, inlined from ‘constexpr void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1594:23, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1869:25, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript 2 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 8 into object ‘b’ of size 8 14 | std::array, N> b; | ^ In member function ‘constexpr auto std::__detail::_Synth3way::operator()(const _Tp&, const _Up&) const requires requires{{std::__detail::_Synth3way::operator()::__t < std::__detail::_Synth3way::operator()::__u} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];{std::__detail::_Synth3way::operator()::__u < std::__detail::_Synth3way::operator()::__t} -> decltype(auto) [requires std::__detail::__boolean_testable<, >];} [with _Tp = int; _Up = int]’, inlined from ‘constexpr std::common_comparison_category_t(), declval<_U1&>())), decltype (std::__detail::__synth3way(declval<_T2&>(), declval<_U2&>()))> std::operator<=>(const pair<_T1, _T2>&, const pair<_U1, _U2>&) [with _T1 = int; _T2 = int; _U1 = int; _U2 = int]’ at /usr/include/c++/15/bits/stl_pair.h:1053:35, inlined from ‘constexpr bool __gnu_cxx::__ops::_Iter_less_iter::operator()(_Iterator1, _Iterator2) const [with _Iterator1 = std::pair*; _Iterator2 = std::pair*]’ at /usr/include/c++/15/bits/predefined_ops.h:45:23, inlined from ‘constexpr void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = pair*; _Distance = long int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:232:14, inlined from ‘constexpr void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_heap.h:356:22, inlined from ‘constexpr void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1594:23, inlined from ‘constexpr void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1869:25, inlined from ‘constexpr void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = pair*; _Size = long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1885:27, inlined from ‘constexpr void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = pair*; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/15/bits/stl_algo.h:1906:25, inlined from ‘constexpr void std::sort(_RAIter, _RAIter) [with _RAIter = pair*]’ at /usr/include/c++/15/bits/stl_algo.h:4841:18, inlined from ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:17:12: /usr/include/c++/15/compare:1244:28: warning: array subscript 3 is outside array bounds of ‘std::array, 1> [1]’ [-Warray-bounds=] 1244 | return __t <=> __u; | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h: In constructor ‘RangePartition::RangePartition(const int*, int, int) [with int N = 1; T = int]’: /build/reproducible-path/diamond-aligner-2.1.14/src/util/data_structures/range_partition.h:14:52: note: at offset 12 into object ‘b’ of size 8 14 | std::array, N> b; | ^ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' [ 5%] Built target arch_generic make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.14 /build/reproducible-path/diamond-aligner-2.1.14 /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' [ 7%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o [ 7%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -MF CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/stats/score_matrix.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/data/queries.cpp.o -MF CMakeFiles/diamond.dir/src/data/queries.cpp.o.d -o CMakeFiles/diamond.dir/src/data/queries.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/data/queries.cpp [ 8%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/run/main.cpp.o -MF CMakeFiles/diamond.dir/src/run/main.cpp.o.d -o CMakeFiles/diamond.dir/src/run/main.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/run/main.cpp [ 8%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/basic/config.cpp.o -MF CMakeFiles/diamond.dir/src/basic/config.cpp.o.d -o CMakeFiles/diamond.dir/src/basic/config.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/basic/config.cpp [ 8%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -MF CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o.d -o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/data/seed_histogram.cpp [ 9%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o -MF CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o.d -o CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/output/daa/daa_record.cpp [ 10%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o -MF CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o.d -o CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o -c 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CMakeFiles/diamond.dir/src/output/paf_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/paf_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/paf_format.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/output/paf_format.cpp [ 37%] Building CXX object CMakeFiles/diamond.dir/src/util/system/system.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/system/system.cpp.o -MF CMakeFiles/diamond.dir/src/util/system/system.cpp.o.d -o CMakeFiles/diamond.dir/src/util/system/system.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/util/system/system.cpp [ 37%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/greedy_vertex_cover.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/algo/greedy_vertex_cover.cpp.o -MF CMakeFiles/diamond.dir/src/util/algo/greedy_vertex_cover.cpp.o.d -o CMakeFiles/diamond.dir/src/util/algo/greedy_vertex_cover.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/greedy_vertex_cover.cpp [ 38%] Building CXX object CMakeFiles/diamond.dir/src/util/sequence/sequence.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/sequence/sequence.cpp.o -MF CMakeFiles/diamond.dir/src/util/sequence/sequence.cpp.o.d -o CMakeFiles/diamond.dir/src/util/sequence/sequence.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/util/sequence/sequence.cpp In file included from /usr/include/c++/15/bits/char_traits.h:59, from /usr/include/c++/15/string:44, from /usr/include/c++/15/stdexcept:41, from /build/reproducible-path/diamond-aligner-2.1.14/src/util/sequence/sequence.cpp:22: In function ‘constexpr void std::_Construct(_Tp*, _Args&& ...) [with _Tp = signed char; _Args = {}]’, inlined from ‘static constexpr _ForwardIterator std::__uninitialized_default_n_1::__uninit_default_n(_ForwardIterator, _Size) [with _ForwardIterator = signed char*; _Size = long unsigned int]’ at /usr/include/c++/15/bits/stl_uninitialized.h:894:23, inlined from ‘static constexpr _ForwardIterator std::__uninitialized_default_n_1::__uninit_default_n(_ForwardIterator, _Size) [with _ForwardIterator = signed char*; _Size = long unsigned int]’ at /usr/include/c++/15/bits/stl_uninitialized.h:888:9, inlined from ‘constexpr _ForwardIterator std::__uninitialized_default_n(_ForwardIterator, _Size) [with _ForwardIterator = signed char*; _Size = long unsigned int]’ at /usr/include/c++/15/bits/stl_uninitialized.h:947:20, inlined from ‘constexpr _ForwardIterator std::__uninitialized_default_n_a(_ForwardIterator, _Size, allocator<_Tp2>&) [with _ForwardIterator = signed char*; _Size = long unsigned int; _Tp = signed char]’ at /usr/include/c++/15/bits/stl_uninitialized.h:1002:44, inlined from ‘constexpr void std::vector<_Tp, _Alloc>::_M_default_append(size_type) [with _Tp = signed char; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/vector.tcc:794:35, inlined from ‘constexpr void std::vector<_Tp, _Alloc>::resize(size_type) [with _Tp = signed char; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/stl_vector.h:1146:21, inlined from ‘static size_t Translator::translate(const Sequence&, std::vector*)’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/sequence/translate.h:61:21, inlined from ‘std::array, 6> Util::Seq::translate(const Sequence&)’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/sequence/sequence.cpp:178:23: /usr/include/c++/15/bits/stl_construct.h:133:7: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 133 | ::new(static_cast(__p)) _Tp(std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45: In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = signed char]’, inlined from ‘constexpr _Tp* std::allocator< >::allocate(std::size_t) [with _Tp = signed char]’ at /usr/include/c++/15/bits/allocator.h:203:40, inlined from ‘static constexpr _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = signed char]’ at /usr/include/c++/15/bits/alloc_traits.h:614:28, inlined from ‘constexpr std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = signed char; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/stl_vector.h:387:33, inlined from ‘constexpr void std::vector<_Tp, _Alloc>::_M_default_append(size_type) [with _Tp = signed char; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/vector.tcc:789:45, inlined from ‘constexpr void std::vector<_Tp, _Alloc>::resize(size_type) [with _Tp = signed char; _Alloc = std::allocator]’ at /usr/include/c++/15/bits/stl_vector.h:1146:21, inlined from ‘static size_t Translator::translate(const Sequence&, std::vector*)’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/sequence/translate.h:61:21, inlined from ‘std::array, 6> Util::Seq::translate(const Sequence&)’ at /build/reproducible-path/diamond-aligner-2.1.14/src/util/sequence/sequence.cpp:178:23: /usr/include/c++/15/bits/new_allocator.h:151:73: note: destination object of size 0 allocated by ‘operator new’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 38%] Building CXX object CMakeFiles/diamond.dir/src/tools/tools.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND 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-I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/system/getRSS.cpp.o -MF CMakeFiles/diamond.dir/src/util/system/getRSS.cpp.o.d -o CMakeFiles/diamond.dir/src/util/system/getRSS.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/util/system/getRSS.cpp [ 40%] Building CXX object CMakeFiles/diamond.dir/src/lib/tantan/LambdaCalculator.cc.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/align/extend.cpp.o -MF CMakeFiles/diamond.dir/src/align/extend.cpp.o.d -o CMakeFiles/diamond.dir/src/align/extend.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/align/extend.cpp [ 42%] Building CXX object CMakeFiles/diamond.dir/src/test/test.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/dp/scalar/smith_waterman.cpp.o -MF CMakeFiles/diamond.dir/src/dp/scalar/smith_waterman.cpp.o.d -o CMakeFiles/diamond.dir/src/dp/scalar/smith_waterman.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/dp/scalar/smith_waterman.cpp [ 93%] Building CXX object CMakeFiles/diamond.dir/src/tools/tsv.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/tools/tsv.cpp.o -MF CMakeFiles/diamond.dir/src/tools/tsv.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/tsv.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/tools/tsv.cpp [ 94%] Building CXX object CMakeFiles/diamond.dir/src/cluster/external/external.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/cluster/external/external.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/external/external.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/external/external.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/cluster/external/external.cpp [ 94%] Building CXX object CMakeFiles/diamond.dir/src/cluster/external/align.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/cluster/external/align.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/external/align.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/external/align.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/cluster/external/align.cpp [ 95%] Building CXX object CMakeFiles/diamond.dir/src/cluster/external/cluster.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/cluster/external/cluster.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/external/cluster.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/external/cluster.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/cluster/external/cluster.cpp [ 96%] Building CXX object CMakeFiles/diamond.dir/src/cluster/external/output.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/cluster/external/output.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/external/output.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/external/output.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/cluster/external/output.cpp [ 96%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/pagerank.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/algo/pagerank.cpp.o -MF CMakeFiles/diamond.dir/src/util/algo/pagerank.cpp.o.d -o CMakeFiles/diamond.dir/src/util/algo/pagerank.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/pagerank.cpp [ 97%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/mcl.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/algo/mcl.cpp.o -MF CMakeFiles/diamond.dir/src/util/algo/mcl.cpp.o.d -o CMakeFiles/diamond.dir/src/util/algo/mcl.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/mcl.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/Core:369, from /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/Dense:1, from /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/mcl.cpp:1: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h: In instantiation of ‘static void Eigen::PlainObjectBase::_check_template_params() [with Derived = Eigen::Matrix]’: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Matrix.h:276:35: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&&) [with _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 276 | Base::_check_template_params(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/mcl.cpp:35:12: required from here 35 | return result; | ^~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ‘Eigen::PlainObjectBase >::’ and ‘Eigen::StorageOptions’ is deprecated [-Wdeprecated-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: in definition of macro ‘EIGEN_STATIC_ASSERT’ 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:28: note: in expansion of macro ‘EIGEN_IMPLIES’ 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ^~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ‘Eigen::PlainObjectBase >::’ and ‘Eigen::StorageOptions’ is deprecated [-Wdeprecated-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~~^~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: in definition of macro ‘EIGEN_STATIC_ASSERT’ 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:28: note: in expansion of macro ‘EIGEN_IMPLIES’ 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/Core:445: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::unary_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >, Eigen::internal::IndexBased, double>’: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > > >’ 349 | Flags = evaluator::Flags & ~DirectAccessBit, | ^~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; typename Eigen::internal::traits::Scalar = double]’ 416 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Redux.h:438:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::maxCoeff() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix > >; typename Eigen::internal::traits::Scalar = double]’ 438 | return derived().redux(Eigen::internal::scalar_max_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/mcl.cpp:55:40: required from here 55 | return ((A - B).cwiseAbs().maxCoeff() < eps); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:522:55: warning: arithmetic between different enumeration types ‘Eigen::internal::binary_evaluator, const Eigen::Matrix, const Eigen::Matrix >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::’ and ‘Eigen::internal::functor_traits >::’ is deprecated [-Wdeprecated-enum-enum-conversion] 522 | CoeffReadCost = evaluator::CoeffReadCost + functor_traits::Cost, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ 665 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:1338:41: required from ‘struct Eigen::internal::evaluator_wrapper_base, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ 1338 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:1405:8: required from ‘struct Eigen::internal::unary_evaluator, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, Eigen::internal::IndexBased, double>’ 1405 | struct unary_evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:730:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Func = assign_op]’ 836 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 804 | call_assignment_no_alias(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >]’ 782 | call_assignment(dst, src, internal::assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Derived = Eigen::Matrix]’ 714 | internal::call_assignment(this->derived(), other.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::MatrixWrapper, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 225 | return Base::_set(other); | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/mcl.cpp:44:41: required from here 44 | M = M.array().pow(inflation).matrix(); | ^ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:681:51: warning: arithmetic between different enumeration types ‘Eigen::internal::evaluator_wrapper_base > >::’ and ‘Eigen::internal::evaluator, const Eigen::Array > >::’ is deprecated [-Wdeprecated-enum-enum-conversion] 681 | CoeffReadCost = evaluator::CoeffReadCost + evaluator::CoeffReadCost + functor_traits::Cost, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/Core:498: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h: In instantiation of ‘struct Eigen::internal::product_evaluator, Eigen::Matrix, 1>, 8, Eigen::DenseShape, Eigen::DenseShape, double, double>’: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:29:8: required from ‘struct Eigen::internal::evaluator, Eigen::Matrix, 1> >’ 29 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:730:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::Product, Eigen::Matrix, 1>; Functor = assign_op]’ 730 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::Product, Eigen::Matrix, 1>; Functor = Eigen::internal::assign_op; Weak = void]’ 879 | call_dense_assignment_loop(dst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 1>; Func = assign_op]’ 836 | Assignment::run(actualDst, src, func); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:436:29: required from ‘static void Eigen::internal::generic_product_impl::eval_dynamic(Dst&, const LhsT&, const Rhs&, const Func&) [with Dst = Eigen::Matrix; LhsT = Eigen::Matrix; Func = Eigen::internal::assign_op; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix]’ 436 | call_assignment_no_alias(dst, lhs.lazyProduct(rhs), func); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:433:32: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Matrix.h:294:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 294 | Base::template _init1(x); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:796:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>; Func = assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 796 | typename plain_matrix_type::type tmp(src); | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>]’ 782 | call_assignment(dst, src, internal::assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ 714 | internal::call_assignment(this->derived(), other.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 225 | return Base::_set(other); | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/mcl.cpp:31:42: required from here 31 | if (power & 1) result = result * base; | ^~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:524:61: warning: arithmetic between different enumeration types ‘Eigen::GenericNumTraits::’ and ‘Eigen::internal::evaluator > >::’ is deprecated [-Wdeprecated-enum-enum-conversion] 524 | : InnerSize * (NumTraits::MulCost + LhsCoeffReadCost + RhsCoeffReadCost) | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:573:39: warning: arithmetic between different enumeration types ‘Eigen::internal::product_evaluator, Eigen::Matrix, 1>, 8, Eigen::DenseShape, Eigen::DenseShape, double, double>::’ and ‘Eigen::internal::packet_traits::’ is deprecated [-Wdeprecated-enum-enum-conversion] 573 | && (InnerSize % packet_traits::size == 0) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/Core:496: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int mr = 1; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; ResScalar = double]’: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:196:15: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 0; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ 196 | gebp(res.getSubMapper(i2, j2), blockA, blockB, actual_mc, actual_kc, actual_nc, alpha); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:228:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ 228 | Gemm::run(rows, cols, m_lhs.cols(), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 229 | &m_lhs.coeffRef(row,0), m_lhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 | &m_rhs.coeffRef(0,col), m_rhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | (Scalar*)&(m_dest.coeffRef(row,col)), m_dest.innerStride(), m_dest.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | m_actualAlpha, m_blocking, info); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/Parallelizer.h:98:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Matrix, Eigen::Matrix, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ 98 | func(0,rows, 0,cols); | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:487:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; Scalar = double]’ 486 | internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 | (GemmFunctor(lhs, rhs, dst, actualAlpha, blocking), a_lhs.rows(), a_rhs.cols(), a_lhs.cols(), Dest::Flags&RowMajorBit); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix]’ 437 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Matrix.h:294:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 294 | Base::template _init1(x); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:796:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>; Func = assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 796 | typename plain_matrix_type::type tmp(src); | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>]’ 782 | call_assignment(dst, src, internal::assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ 714 | internal::call_assignment(this->derived(), other.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 225 | return Base::_set(other); | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/mcl.cpp:31:42: required from here 31 | if (power & 1) result = result * base; | ^~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1120:22: warning: arithmetic between different enumeration types ‘Eigen::internal::gebp_kernel, 1, 4, false, false>::operator()(const Eigen::internal::blas_data_mapper&, const double*, const double*, long int, long int, long int, ResScalar, long int, long int, long int, long int)::’ and ‘Eigen::internal::gebp_kernel, 1, 4, false, false>::’ is deprecated [-Wdeprecated-enum-enum-conversion] 1120 | blB += pk*RhsProgress; | ~~^~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1330:22: warning: arithmetic between different enumeration types ‘Eigen::internal::gebp_kernel, 1, 4, false, false>::operator()(const Eigen::internal::blas_data_mapper&, const double*, const double*, long int, long int, long int, ResScalar, long int, long int, long int, long int)::’ and ‘Eigen::internal::gebp_kernel, 1, 4, false, false>::’ is deprecated [-Wdeprecated-enum-enum-conversion] 1330 | blB += pk*RhsProgress; | ~~^~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1498:22: warning: arithmetic between different enumeration types ‘Eigen::internal::gebp_kernel, 1, 4, false, false>::operator()(const Eigen::internal::blas_data_mapper&, const double*, const double*, long int, long int, long int, ResScalar, long int, long int, long int, long int)::’ and ‘Eigen::internal::gebp_kernel, 1, 4, false, false>::’ is deprecated [-Wdeprecated-enum-enum-conversion] 1498 | blB += pk*RhsProgress; | ~~^~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’: /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ 665 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> > >’ 349 | Flags = evaluator::Flags & ~DirectAccessBit, | ^~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 416 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, -1, false> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 453 | return derived().redux(Eigen::internal::scalar_sum_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:578:75: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Matrix; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; CoeffReturnType = double; Eigen::Index = long int]’ 578 | return (m_lhs.row(row).transpose().cwiseProduct( m_rhs.col(col) )).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:631:63: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Matrix.h:294:31: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 294 | Base::template _init1(x); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:796:41: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>; Func = assign_op; typename enable_if::value, void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ 796 | typename plain_matrix_type::type tmp(src); | ^~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Matrix, 0>]’ 782 | call_assignment(dst, src, internal::assign_op()); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; Derived = Eigen::Matrix]’ 714 | internal::call_assignment(this->derived(), other.derived()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Matrix, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ 225 | return Base::_set(other); | ~~~~~~~~~~^~~~~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/util/algo/mcl.cpp:31:42: required from here 31 | if (power & 1) result = result * base; | ^~~~ /build/reproducible-path/diamond-aligner-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:681:51: warning: arithmetic between different enumeration types ‘Eigen::internal::unary_evaluator, 1, -1, false> >, Eigen::internal::IndexBased, double>::’ and ‘Eigen::internal::evaluator, -1, 1, true> >::’ is deprecated [-Wdeprecated-enum-enum-conversion] 681 | CoeffReadCost = evaluator::CoeffReadCost + evaluator::CoeffReadCost + functor_traits::Cost, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 98%] Building CXX object CMakeFiles/diamond.dir/src/stats/blast/matrix_adjust.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.14/src -I/build/reproducible-path/diamond-aligner-2.1.14/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/stats/blast/matrix_adjust.cpp.o -MF CMakeFiles/diamond.dir/src/stats/blast/matrix_adjust.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/blast/matrix_adjust.cpp.o -c 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CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -o diamond /usr/lib/riscv64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14' cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls + mktemp -d + TESTDIR=/tmp/tmp.4xUcAMlObb + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.4xUcAMlObb/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.005s] Masking queries... [0.186s] Algorithm: Double-indexed Building query histograms... [0.087s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.171s] Initializing temporary storage... [0.003s] Building reference histograms... [0.084s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [1.027s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.539s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.4xUcAMlObb/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.004s] Masking queries... [0.174s] Algorithm: Double-indexed Building query histograms... [0.076s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.186s] Initializing temporary storage... [0.004s] Building reference histograms... [0.085s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.632s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.115s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.4xUcAMlObb/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.002s] Masking queries... [0.092s] Algorithm: Double-indexed Building query histograms... [0.045s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.172s] Initializing temporary storage... [0.002s] Building reference histograms... [0.087s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.735s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.653s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.4xUcAMlObb/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.004s] Masking queries... [0.175s] Algorithm: Double-indexed Building query histograms... [0.073s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.09s] Initializing temporary storage... [0.002s] Building reference histograms... [0.047s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.009s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.006s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.987s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.97s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.4xUcAMlObb/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.002s] Masking queries... [0.093s] Algorithm: Double-indexed Building query histograms... [0.042s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.171s] Initializing temporary storage... [0.002s] Building reference histograms... [0.086s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.006s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.732s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.619s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.4xUcAMlObb/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.004s] Masking queries... [0.175s] Algorithm: Double-indexed Building query histograms... [0.074s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.091s] Initializing temporary storage... [0.002s] Building reference histograms... [0.044s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [1.037s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.938s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.4xUcAMlObb/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.004s] Algorithm: Double-indexed Building query histograms... [0.001s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.171s] Initializing temporary storage... [0.002s] Building reference histograms... [0.07s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.02s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 2.347s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.4xUcAMlObb/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.004s] Masking queries... [0.175s] Algorithm: Double-indexed Building query histograms... [0.093s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.002s] Building reference histograms... [0.002s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0.001s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.021s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 2.491s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.4xUcAMlObb/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.002s] Masking queries... [0.092s] Algorithm: Double-indexed Building query histograms... [0.04s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.183s] Initializing temporary storage... [0.003s] Building reference histograms... [0.083s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.006s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [8.737s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 12.024s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.4xUcAMlObb/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.004s] Masking queries... [0.186s] Algorithm: Double-indexed Building query histograms... [0.092s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.09s] Initializing temporary storage... [0.002s] Building reference histograms... [0.044s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.015s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.016s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.017s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.008s] Building query seed array... [0.015s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [13.711s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 17.134s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.4xUcAMlObb/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.002s] Masking queries... [0.093s] Algorithm: Double-indexed Building query histograms... [0.041s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.194s] Initializing temporary storage... [0.003s] Building reference histograms... [0.094s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.006s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.007s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [8.749s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 12.012s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.4xUcAMlObb/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.005s] Masking queries... [0.186s] Algorithm: Double-indexed Building query histograms... [0.091s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.091s] Initializing temporary storage... [0.002s] Building reference histograms... [0.047s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.014s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [14.17s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 17.46s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.4xUcAMlObb/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.005s] Algorithm: Double-indexed Building query histograms... [0.002s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.183s] Initializing temporary storage... [0.002s] Building reference histograms... [0.076s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.002s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.004s] Computing hash join... [0.002s] Masking low complexity seeds... [0.001s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.005s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.002s] Computing hash join... [0.003s] Masking low complexity seeds... [0.001s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.003s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.002s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.022s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 2.546s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.4xUcAMlObb/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.005s] Masking queries... [0.186s] Algorithm: Double-indexed Building query histograms... [0.099s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.002s] Building reference histograms... [0.002s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.015s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.015s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.015s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.021s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 2.463s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.4xUcAMlObb/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.002s] Masking queries... [0.093s] Algorithm: Double-indexed Building query histograms... [0.048s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.09s] Initializing temporary storage... [0.002s] Building reference histograms... [0.044s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.082s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [4.424s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 10.197s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.4xUcAMlObb/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.002s] Masking queries... [0.092s] Algorithm: Double-indexed Building query histograms... [0.047s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.098s] Initializing temporary storage... [0.003s] Building reference histograms... [0.048s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.078s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.009s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.072s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.005s] Masking low complexity seeds... [0.005s] Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.009s] Building query seed array... [0.008s] Computing hash join... [0.005s] Masking low complexity seeds... [0.006s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.048s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [4.462s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 10.231s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.4xUcAMlObb/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.004s] Algorithm: Double-indexed Building query histograms... [0.002s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.09s] Initializing temporary storage... [0.002s] Building reference histograms... [0.04s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.008s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.022s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 1.778s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.4xUcAMlObb/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.002s] Masking queries... [0.092s] Algorithm: Double-indexed Building query histograms... [0.04s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.002s] Building reference histograms... [0.002s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.023s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 1.776s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.4xUcAMlObb/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.004s] Algorithm: Double-indexed Building query histograms... [0.002s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.091s] Initializing temporary storage... [0.002s] Building reference histograms... [0.037s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.009s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.008s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.003s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.01s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.027s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 1.837s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.4xUcAMlObb/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.14.168 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.4xUcAMlObb #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.003s] Masking queries... [0.095s] Algorithm: Double-indexed Building query histograms... [0.046s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.004s] Initializing temporary storage... [0.002s] Building reference histograms... [0.002s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.021s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 1.795s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + rm -rf /tmp/tmp.4xUcAMlObb make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/diamond-aligner/ -a cd obj-riscv64-linux-gnu && make -j4 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.14/debian/diamond-aligner AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.14 -B/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/diamond-aligner-2.1.14/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14/obj-riscv64-linux-gnu' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.14' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.14' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.14-1_riscv64.deb'. dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.14-1_riscv64.deb'. dpkg-genbuildinfo --build=any -O../diamond-aligner_2.1.14-1_riscv64.buildinfo dpkg-genchanges --build=any -O../diamond-aligner_2.1.14-1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-10-29T18:28:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 29 Oct 2025 18:28:11 +0000 | +------------------------------------------------------------------------------+ diamond-aligner_2.1.14-1_riscv64.changes: ----------------------------------------- Format: 1.8 Date: Fri, 17 Oct 2025 11:44:29 +0200 Source: diamond-aligner Binary: diamond-aligner diamond-aligner-dbgsym Architecture: riscv64 Version: 2.1.14-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: diamond-aligner - accelerated BLAST compatible local sequence aligner Closes: 1112842 Changes: diamond-aligner (2.1.14-1) unstable; urgency=medium . * Fix build with CMake 4 Closes: #1112842 * d/watch: version=5 * New upstream version * debputy lint --auto-fix (routine-update) Checksums-Sha1: 40749fdab81c4b36f3f0b59f90c4e0e1d375c61e 33122140 diamond-aligner-dbgsym_2.1.14-1_riscv64.deb 5cb278dc63fa3b4330cf66e9ac30a82704f55e71 5842 diamond-aligner_2.1.14-1_riscv64.buildinfo 7fb08d7f2a31e8a1a08740325c5f54ca9f5cfb9b 1982052 diamond-aligner_2.1.14-1_riscv64.deb Checksums-Sha256: a05595bb6aa37722c0c661be6f17ab802745f09ccae5190e70836787bfd42343 33122140 diamond-aligner-dbgsym_2.1.14-1_riscv64.deb 7c53ae59ac048424ebbb7446742f6ec18b60ce26002ddf32c9a655346dbbaf66 5842 diamond-aligner_2.1.14-1_riscv64.buildinfo 401d9bd59567939b28a8c890e69e05d0c4b981f66a7c45d708f5b85b3bd2f0fb 1982052 diamond-aligner_2.1.14-1_riscv64.deb Files: e41c687788f4f31bf009916698fd498e 33122140 debug optional diamond-aligner-dbgsym_2.1.14-1_riscv64.deb 9896fff9fde609211f0329964b6ca8b2 5842 science optional diamond-aligner_2.1.14-1_riscv64.buildinfo 50e95b7e03b22f954deb85745dcb5761 1982052 science optional diamond-aligner_2.1.14-1_riscv64.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 29 Oct 2025 18:28:15 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: diamond-aligner Binary: diamond-aligner diamond-aligner-dbgsym Architecture: riscv64 Version: 2.1.14-1 Checksums-Md5: e41c687788f4f31bf009916698fd498e 33122140 diamond-aligner-dbgsym_2.1.14-1_riscv64.deb 50e95b7e03b22f954deb85745dcb5761 1982052 diamond-aligner_2.1.14-1_riscv64.deb Checksums-Sha1: 40749fdab81c4b36f3f0b59f90c4e0e1d375c61e 33122140 diamond-aligner-dbgsym_2.1.14-1_riscv64.deb 7fb08d7f2a31e8a1a08740325c5f54ca9f5cfb9b 1982052 diamond-aligner_2.1.14-1_riscv64.deb Checksums-Sha256: a05595bb6aa37722c0c661be6f17ab802745f09ccae5190e70836787bfd42343 33122140 diamond-aligner-dbgsym_2.1.14-1_riscv64.deb 401d9bd59567939b28a8c890e69e05d0c4b981f66a7c45d708f5b85b3bd2f0fb 1982052 diamond-aligner_2.1.14-1_riscv64.deb Build-Origin: Debian Build-Architecture: riscv64 Build-Date: Wed, 29 Oct 2025 18:28:02 +0000 Build-Path: /build/reproducible-path/diamond-aligner-2.1.14 Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-2), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.3-1), binutils (= 2.45-7), binutils-common (= 2.45-7), binutils-riscv64-linux-gnu (= 2.45-7), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), cmake (= 4.1.1+really3.31.6-2), cmake-data (= 4.1.1+really3.31.6-2), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-4), cpp-15-riscv64-linux-gnu (= 15.2.0-4), cpp-riscv64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.10-4), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-4), g++-15-riscv64-linux-gnu (= 15.2.0-4), g++-riscv64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-4), gcc-15-base (= 15.2.0-4), gcc-15-riscv64-linux-gnu (= 15.2.0-4), gcc-riscv64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.4-4+b1), libasan8 (= 15.2.0-4), libatomic1 (= 15.2.0-4), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-7), libblkid1 (= 2.41.2-4), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-4), libcom-err2 (= 1.47.2-3+b3), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-7), libctf0 (= 2.45-7), libcurl4t64 (= 8.16.0-4), libdb5.3t64 (= 5.3.28+dfsg2-10), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.28), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.193-3), libexpat1 (= 2.7.3-1), libffi8 (= 3.5.2-2), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-4), libgcc-s1 (= 15.2.0-4), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgmp10 (= 2:6.3.0+dfsg-5), libgnutls30t64 (= 3.8.10-2), libgomp1 (= 15.2.0-4), libgprofng0 (= 2.45-7), libgssapi-krb5-2 (= 1.21.3-5), libhogweed6t64 (= 3.10.2-1), libidn2-0 (= 2.3.8-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-4), libjansson4 (= 2.14-2+b3), libjsoncpp26 (= 1.9.6-4), libk5crypto3 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), libldap2 (= 2.6.10+dfsg-1), liblsan0 (= 15.2.0-4), liblz4-1 (= 1.10.0-4), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-ossl0 (= 1.16.0-1), libp11-kit0 (= 0.25.9-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libproc2-0 (= 2:4.0.4-9), libpsl5t64 (= 0.21.2-1.1+b1), librhash1 (= 1.4.6-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-7), libsmartcols1 (= 2.41.2-4), libssh2-1t64 (= 1.11.1-1), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-4), libstdc++6 (= 15.2.0-4), libsystemd0 (= 258.1-1), libtasn1-6 (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-5), libtsan2 (= 15.2.0-4), libubsan1 (= 15.2.0-4), libuchardet0 (= 0.0.8-2), libudev1 (= 258.1-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libuv1t64 (= 1.51.0-2), libxml2-16 (= 2.14.6+dfsg-0.1), libxxhash0 (= 0.8.3-2), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.16.12-1), m4 (= 1.4.20-2), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-9), rpcsvc-proto (= 1.4.3-1+b2), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1760694269" +------------------------------------------------------------------------------+ | Package contents Wed, 29 Oct 2025 18:28:16 +0000 | +------------------------------------------------------------------------------+ diamond-aligner-dbgsym_2.1.14-1_riscv64.deb ------------------------------------------- new Debian package, version 2.0. size 33122140 bytes: control archive=544 bytes. 408 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: diamond-aligner-dbgsym Source: diamond-aligner Version: 2.1.14-1 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 37145 Depends: diamond-aligner (= 2.1.14-1) Section: debug Priority: optional Description: debug symbols for diamond-aligner Build-Ids: 268f91e3b13e5ef7e960a408204854fce08de386 drwxr-xr-x root/root 0 2025-10-17 09:44 ./ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/lib/ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/lib/debug/.build-id/26/ -rw-r--r-- root/root 38026216 2025-10-17 09:44 ./usr/lib/debug/.build-id/26/8f91e3b13e5ef7e960a408204854fce08de386.debug drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/share/ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-10-17 09:44 ./usr/share/doc/diamond-aligner-dbgsym -> diamond-aligner diamond-aligner_2.1.14-1_riscv64.deb ------------------------------------ new Debian package, version 2.0. size 1982052 bytes: control archive=1244 bytes. 771 bytes, 16 lines control 1426 bytes, 18 lines md5sums Package: diamond-aligner Version: 2.1.14-1 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 4499 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.4), libstdc++6 (>= 14), zlib1g (>= 1:1.1.4) Recommends: med-config Section: science Priority: optional Homepage: https://github.com/bbuchfink/diamond Description: accelerated BLAST compatible local sequence aligner DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000. drwxr-xr-x root/root 0 2025-10-17 09:44 ./ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/bin/ -rwxr-xr-x root/root 4380080 2025-10-17 09:44 ./usr/bin/diamond lrwxrwxrwx root/root 0 2025-10-17 09:44 ./usr/bin/diamond-aligner -> diamond drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/share/ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/ -rw-r--r-- root/root 3859 2025-09-12 15:46 ./usr/share/doc/diamond-aligner/README.md -rw-r--r-- root/root 2372 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/changelog.Debian.gz -rw-r--r-- root/root 28504 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/copyright -rw-r--r-- root/root 3460 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/diamond-calls -rw-r--r-- root/root 396 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/run-unit-test drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/ -rw-r--r-- root/root 24551 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/C.faa.diamond.dmnd.gz -rw-r--r-- root/root 24290 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/C.faa.gz -rw-r--r-- root/root 751 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/C2.faa -rw-r--r-- root/root 884 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/C2.faa.diamond.dmnd -rw-r--r-- root/root 29218 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/E.faa.diamond.dmnd.gz -rw-r--r-- root/root 29389 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/E.faa.gz -rw-r--r-- root/root 14115 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/L.faa.diamond.dmnd.gz -rw-r--r-- root/root 14172 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/L.faa.gz -rw-r--r-- root/root 14242 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/M.faa.diamond.dmnd.gz -rw-r--r-- root/root 14230 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/M.faa.gz -rw-r--r-- root/root 110 2025-10-17 09:44 ./usr/share/doc/diamond-aligner/test/README.data drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/share/man/ drwxr-xr-x root/root 0 2025-10-17 09:44 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-10-17 09:44 ./usr/share/man/man1/diamond-aligner.1.gz -> diamond.1.gz -rw-r--r-- root/root 3600 2025-10-17 09:44 ./usr/share/man/man1/diamond.1.gz +------------------------------------------------------------------------------+ | Post Build Wed, 29 Oct 2025 18:28:25 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 29 Oct 2025 18:28:25 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 29 Oct 2025 18:28:38 +0000 | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 1000700 Build-Time: 2862 Distribution: unstable Host Architecture: riscv64 Install-Time: 25 Job: /srv/rebuilderd/tmp/rebuilderdkVcisA/inputs/diamond-aligner_2.1.14-1.dsc Machine Architecture: riscv64 Package: diamond-aligner Package-Time: 2979 Source-Version: 2.1.14-1 Space: 1000700 Status: successful Version: 2.1.14-1 -------------------------------------------------------------------------------- Finished at 2025-10-29T18:28:06Z Build needed 00:49:39, 1000700k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdkVcisA/out checking diamond-aligner-dbgsym_2.1.14-1_riscv64.deb: size... md5... sha1... sha256... all OK checking diamond-aligner_2.1.14-1_riscv64.deb: size... sha1... sha256... md5... all OK + set +x +------------------------------------------------------------------------------+ | Finished running debrebuild Wed, 29 Oct 2025 18:28:40 +0000 | +------------------------------------------------------------------------------+