=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Get:1 https://deb.debian.org/debian trixie InRelease [175 kB] Get:2 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Fetched 10.7 MB in 11s (972 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds-1.dsc' python-pysam_0.23.0+ds-1.dsc 2441 SHA256:6f03755627321ef54c141a0a6ea4fb8d3b9816c75052fbbc133a185a4f847f09 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds.orig.tar.xz' python-pysam_0.23.0+ds.orig.tar.xz 1519052 SHA256:c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.0%2bds-1.debian.tar.xz' python-pysam_0.23.0+ds-1.debian.tar.xz 10632 SHA256:9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440 c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd python-pysam_0.23.0+ds.orig.tar.xz 9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440 python-pysam_0.23.0+ds-1.debian.tar.xz 6f03755627321ef54c141a0a6ea4fb8d3b9816c75052fbbc133a185a4f847f09 python-pysam_0.23.0+ds-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Thu, 10 Apr 2025 02:33:11 +0000 | +------------------------------------------------------------------------------+ Rebuilding python-pysam_0.23.0+ds-1+b1_riscv64.buildinfo in /tmp/rebuilderdFDwHj2/inputs now. + nice /usr/bin/debrebuild --buildresult=/tmp/rebuilderdFDwHj2/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /tmp/rebuilderdFDwHj2/inputs/python-pysam_0.23.0+ds-1+b1_riscv64.buildinfo /tmp/rebuilderdFDwHj2/inputs/python-pysam_0.23.0+ds-1+b1_riscv64.buildinfo containes a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/python-pysam-0.23.0+ds I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid InRelease [205 kB] Get:2 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 Packages [9718 kB] Fetched 9923 kB in 7s (1343 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250228T025314Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libkrb5-dev riscv64 1.21.3-4 [15.9 kB] Fetched 15.9 kB in 0s (252 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_9tahoie/libkrb5-dev_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 dpkg-dev all 1.22.15 [1337 kB] Fetched 1337 kB in 0s (9599 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptvzxrfgd/dpkg-dev_1.22.15_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 g++ riscv64 4:14.2.0-1 [1328 B] Fetched 1328 B in 0s (20.6 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp5g9by9vq/g++_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-3 [558 kB] Fetched 558 kB in 0s (5885 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpd5fizd7w/libgmp10_6.3.0+dfsg-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libmount1 riscv64 2.40.4-5 [217 kB] Fetched 217 kB in 0s (3004 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqqff4ikd/libmount1_2.40.4-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libstdc++6 riscv64 14.2.0-17 [707 kB] Fetched 707 kB in 0s (6394 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa6n_6yvz/libstdc++6_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3.13-minimal riscv64 3.13.2-1 [2159 kB] Fetched 2159 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0p_u9zrz/python3.13-minimal_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libmd0 riscv64 1.1.0-2+b1 [37.6 kB] Fetched 37.6 kB in 0s (596 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpts3whil6/libmd0_1.1.0-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Fetched 73.0 kB in 0s (1089 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdy_ahhxd/python3-typing-extensions_4.12.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 gzip riscv64 1.13-1 [139 kB] Fetched 139 kB in 0s (1903 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm3wm63_q/gzip_1.13-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpython3-dev riscv64 3.13.2-1 [10.3 kB] Fetched 10.3 kB in 0s (160 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt3s8_nzw/libpython3-dev_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 man-db riscv64 2.13.0-1 [1407 kB] Fetched 1407 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi34lkm7y/man-db_2.13.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 perl-base riscv64 5.40.1-2 [1662 kB] Fetched 1662 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp42a6dq_d/perl-base_5.40.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libdebhelper-perl all 13.24.1 [90.9 kB] Fetched 90.9 kB in 0s (1355 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpot9ymvxn/libdebhelper-perl_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-iniconfig all 1.1.1-2 [6396 B] Fetched 6396 B in 0s (104 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpthsni2h7/python3-iniconfig_1.1.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgcc-s1 riscv64 14.2.0-17 [56.7 kB] Fetched 56.7 kB in 0s (677 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpss7regq6/libgcc-s1_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libssl-dev riscv64 3.4.1-1 [5399 kB] Fetched 5399 kB in 0s (14.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppfq0uh89/libssl-dev_3.4.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libsframe1 riscv64 2.44-2 [79.1 kB] Fetched 79.1 kB in 0s (1225 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdpy85yd_/libsframe1_2.44-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 samtools riscv64 1.21-1 [673 kB] Fetched 673 kB in 0s (6062 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxdm3qhd/samtools_1.21-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 cpp riscv64 4:14.2.0-1 [1576 B] Fetched 1576 B in 0s (22.1 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpvvr27t94/cpp_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 binutils-common riscv64 2.44-2 [2508 kB] Fetched 2508 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpklcjbdp6/binutils-common_2.44-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpython3.13-dev riscv64 3.13.2-1 [14.3 MB] Fetched 14.3 MB in 1s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_miiup2/libpython3.13-dev_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2+b5 [59.0 kB] Fetched 59.0 kB in 0s (830 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprpnil3v5/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libattr1 riscv64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (303 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpnzw0bawe/libattr1_2.5.2-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpkgconf3 riscv64 1.8.1-4 [36.0 kB] Fetched 36.0 kB in 0s (524 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8v82mqc2/libpkgconf3_1.8.1-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 bash riscv64 5.2.37-1.1 [1505 kB] Fetched 1505 kB in 0s (9100 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsotyzuzn/bash_5.2.37-1.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 perl riscv64 5.40.1-2 [267 kB] Fetched 267 kB in 0s (3145 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmxjph67f/perl_5.40.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (339 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3xwnv00h/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libkeyutils1 riscv64 1.6.3-4 [9124 B] Fetched 9124 B in 0s (146 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpukwp94uu/libkeyutils1_1.6.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 mawk riscv64 1.3.4.20250131-1 [142 kB] Fetched 142 kB in 0s (1969 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpomiz9j0l/mawk_1.3.4.20250131-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libevent-2.1-7t64 riscv64 2.1.12-stable-10+b1 [182 kB] Fetched 182 kB in 0s (2520 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmlnw4511/libevent-2.1-7t64_2.1.12-stable-10+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libk5crypto3 riscv64 1.21.3-4 [99.9 kB] Fetched 99.9 kB in 0s (1452 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptfa2wfvt/libk5crypto3_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 bsdextrautils riscv64 2.40.4-5 [96.2 kB] Fetched 96.2 kB in 0s (1516 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzp8685tm/bsdextrautils_2.40.4-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 comerr-dev riscv64 2.1-1.47.2-1 [59.1 kB] Fetched 59.1 kB in 0s (890 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuwbtszne/comerr-dev_2.1-1.47.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 ncurses-base all 6.5+20250216-1 [273 kB] Fetched 273 kB in 0s (2804 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpax2yt0qn/ncurses-base_6.5+20250216-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgprofng0 riscv64 2.44-2 [717 kB] Fetched 717 kB in 0s (6803 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpigny5bzw/libgprofng0_2.44-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Fetched 30.5 kB in 0s (491 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu_50l_76/libjs-sphinxdoc_8.1.3-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libuuid1 riscv64 2.40.4-5 [38.7 kB] Fetched 38.7 kB in 0s (550 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpabutcf_l/libuuid1_2.40.4-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 ncurses-bin riscv64 6.5+20250216-1 [436 kB] Fetched 436 kB in 0s (4773 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzaoqazoj/ncurses-bin_6.5+20250216-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-more-itertools all 10.6.0-1 [65.3 kB] Fetched 65.3 kB in 0s (988 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpun2_kge6/python3-more-itertools_10.6.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 rpcsvc-proto riscv64 1.4.3-1+b2 [62.3 kB] Fetched 62.3 kB in 0s (923 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq_4dlok0/rpcsvc-proto_1.4.3-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-9 [716 kB] Fetched 716 kB in 0s (6614 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr55k6m39/libdb5.3t64_5.3.28+dfsg2-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 netbase all 6.4 [12.8 kB] Fetched 12.8 kB in 0s (196 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqn7gvccx/netbase_6.4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libcap2 riscv64 1:2.73-4 [27.8 kB] Fetched 27.8 kB in 0s (399 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.73-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpfx3uaxwc/libcap2_2.73-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libzstd1 riscv64 1.5.6+dfsg-2 [355 kB] Fetched 355 kB in 0s (3878 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfceez41i/libzstd1_1.5.6+dfsg-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-packaging all 24.2-1 [55.3 kB] Fetched 55.3 kB in 0s (800 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjxpo2eek/python3-packaging_24.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libexpat1-dev riscv64 2.6.4-1 [286 kB] Fetched 286 kB in 0s (3050 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq_fllj3q/libexpat1-dev_2.6.4-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-setuptools all 75.8.0-1 [724 kB] Fetched 724 kB in 0s (6087 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_3u2m5zf/python3-setuptools_75.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-8+b1 [61.0 kB] Fetched 61.0 kB in 0s (822 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcmiwnunn/libsasl2-2_2.1.28+dfsg1-8+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libbrotli-dev riscv64 1.1.0-2+b6 [799 kB] Fetched 799 kB in 0s (6865 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn17wp7er/libbrotli-dev_1.1.0-2+b6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libc-bin riscv64 2.40-7 [601 kB] Fetched 601 kB in 0s (5697 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1bcxjod_/libc-bin_2.40-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libldap-dev riscv64 2.6.9+dfsg-1 [583 kB] Fetched 583 kB in 0s (5855 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv184emh_/libldap-dev_2.6.9+dfsg-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (318 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpos65ir14/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libkrb5-3 riscv64 1.21.3-4 [334 kB] Fetched 334 kB in 0s (3693 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo1gfc1ao/libkrb5-3_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgssapi-krb5-2 riscv64 1.21.3-4 [142 kB] Fetched 142 kB in 0s (1698 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpor2h88x6/libgssapi-krb5-2_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libdebconfclient0 riscv64 0.277 [10.2 kB] Fetched 10.2 kB in 0s (163 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpobjbsx7h/libdebconfclient0_0.277_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libncursesw6 riscv64 6.5+20250216-1 [140 kB] Fetched 140 kB in 0s (1051 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2_hi2xfg/libncursesw6_6.5+20250216-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libdeflate-dev riscv64 1.23-1+b1 [80.5 kB] Fetched 80.5 kB in 0s (972 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdz_x1zs7/libdeflate-dev_1.23-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgdbm6t64 riscv64 1.24-2 [75.9 kB] Fetched 75.9 kB in 0s (1113 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaxrfepve/libgdbm6t64_1.24-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpython3-stdlib riscv64 3.13.2-1 [10.0 kB] Fetched 10.0 kB in 0s (144 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt409tc46/libpython3-stdlib_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 dpkg riscv64 1.22.15 [1543 kB] Fetched 1543 kB in 0s (7746 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy04z74ey/dpkg_1.22.15_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libp11-kit-dev riscv64 0.25.5-3 [208 kB] Fetched 208 kB in 0s (1334 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd65psbsk/libp11-kit-dev_0.25.5-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libperl5.40 riscv64 5.40.1-2 [3936 kB] Fetched 3936 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcmbmsqjr/libperl5.40_5.40.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 findutils riscv64 4.10.0-3 [706 kB] Fetched 706 kB in 0s (6498 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpknrn2xnb/findutils_4.10.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgcc-14-dev riscv64 14.2.0-17 [5213 kB] Fetched 5213 kB in 1s (9434 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb4810sqo/libgcc-14-dev_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-8+b1 [20.6 kB] Fetched 20.6 kB in 0s (321 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe2bm95b4/libsasl2-modules-db_2.1.28+dfsg1-8+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (1417 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8g1tsw1/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 bsdutils riscv64 1:2.40.4-5 [110 kB] Fetched 110 kB in 0s (1401 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.40.4-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpt8cxnevw/bsdutils_2.40.4-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libsystemd0 riscv64 257.3-1 [467 kB] Fetched 467 kB in 0s (5079 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx76nw6rd/libsystemd0_257.3-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 perl-modules-5.40 all 5.40.1-2 [3017 kB] Fetched 3017 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqksq9d6i/perl-modules-5.40_5.40.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 liblsan0 riscv64 14.2.0-17 [1078 kB] Fetched 1078 kB in 0s (7276 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptm5oey9d/liblsan0_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 debconf all 1.5.89 [120 kB] Fetched 120 kB in 0s (1680 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpngarvf2m/debconf_1.5.89_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libelf1t64 riscv64 0.192-4 [194 kB] Fetched 194 kB in 0s (2633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpso0qmsg0/libelf1t64_0.192-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libselinux1 riscv64 3.8-4 [88.0 kB] Fetched 88.0 kB in 0s (1077 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv9bv1qcw/libselinux1_3.8-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 cython3 riscv64 3.0.11+dfsg-2 [3036 kB] Fetched 3036 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpudv5ks6i/cython3_3.0.11+dfsg-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libssl3t64 riscv64 3.4.1-1 [2098 kB] Fetched 2098 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6m9gsmjk/libssl3t64_3.4.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libatomic1 riscv64 14.2.0-17 [8680 B] Fetched 8680 B in 0s (77.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpny47bcs0/libatomic1_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libc6 riscv64 2.40-7 [2444 kB] Fetched 2444 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu6vvwptg/libc6_2.40-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-jaraco.context all 6.0.0-1 [7984 B] Fetched 7984 B in 0s (132 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa59a15tq/python3-jaraco.context_6.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 make riscv64 4.4.1-1 [463 kB] Fetched 463 kB in 0s (4826 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplba97ipk/make_4.4.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgmpxx4ldbl riscv64 2:6.3.0+dfsg-3 [329 kB] Fetched 329 kB in 0s (3662 kB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpm44fznqd/libgmpxx4ldbl_6.3.0+dfsg-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgnutls28-dev riscv64 3.8.9-2 [2614 kB] Fetched 2614 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkjhubuxx/libgnutls28-dev_3.8.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 build-essential riscv64 12.12 [4628 B] Fetched 4628 B in 0s (67.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprnf5plai/build-essential_12.12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libhtscodecs2 riscv64 1.6.1-2 [74.7 kB] Fetched 74.7 kB in 0s (1149 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfk2_9o2q/libhtscodecs2_1.6.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 binutils-riscv64-linux-gnu riscv64 2.44-2 [856 kB] Fetched 856 kB in 0s (7252 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp03g5m8qy/binutils-riscv64-linux-gnu_2.44-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 m4 riscv64 1.4.19-5 [296 kB] Fetched 296 kB in 0s (3404 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyvgv4wt9/m4_1.4.19-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libc-dev-bin riscv64 2.40-7 [56.2 kB] Fetched 56.2 kB in 0s (891 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsuobo3ra/libc-dev-bin_2.40-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 media-types all 12.0.0 [28.9 kB] Fetched 28.9 kB in 0s (472 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5mvp746a/media-types_12.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libngtcp2-crypto-gnutls8 riscv64 1.9.1-1 [18.9 kB] Fetched 18.9 kB in 0s (269 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprrs79oqz/libngtcp2-crypto-gnutls8_1.9.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libzstd-dev riscv64 1.5.6+dfsg-2 [1380 kB] Fetched 1380 kB in 0s (9010 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz69gbqdm/libzstd-dev_1.5.6+dfsg-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 dh-python all 6.20250108 [113 kB] Fetched 113 kB in 0s (1629 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5erg7nz6/dh-python_6.20250108_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libexpat1 riscv64 2.6.4-1 [99.3 kB] Fetched 99.3 kB in 0s (1478 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrrwqtfa/libexpat1_2.6.4-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 g++-riscv64-linux-gnu riscv64 4:14.2.0-1 [1196 B] Fetched 1196 B in 0s (18.8 kB/s) dpkg-name: info: moved 'g++-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpzhq1rr_t/g++-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libisl23 riscv64 0.27-1 [664 kB] Fetched 664 kB in 0s (5993 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfpdp6lns/libisl23_0.27-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpython3.13-minimal riscv64 3.13.2-1 [855 kB] Fetched 855 kB in 0s (6839 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcd0ey0ry/libpython3.13-minimal_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 autopoint all 0.23.1-1 [770 kB] Fetched 770 kB in 0s (6819 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuu0hxr06/autopoint_0.23.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libkrb5support0 riscv64 1.21.3-4 [33.8 kB] Fetched 33.8 kB in 0s (496 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxo7ex8ii/libkrb5support0_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-inflect all 7.3.1-2 [32.4 kB] Fetched 32.4 kB in 0s (532 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplwy75v5v/python3-inflect_7.3.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 g++-14-riscv64-linux-gnu riscv64 14.2.0-17 [15.0 MB] Fetched 15.0 MB in 1s (15.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk28zwtt8/g++-14-riscv64-linux-gnu_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (603 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpji5gjdqr/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3 riscv64 3.13.2-1 [28.1 kB] Fetched 28.1 kB in 0s (402 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpszkhf1zl/python3_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 gettext riscv64 0.23.1-1 [1682 kB] Fetched 1682 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqlhruij1/gettext_0.23.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 linux-libc-dev all 6.12.16-1 [2522 kB] Fetched 2522 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ss4zkoc/linux-libc-dev_6.12.16-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libnghttp3-9 riscv64 1.6.0-2 [66.1 kB] Fetched 66.1 kB in 0s (1023 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0yflyiv/libnghttp3-9_1.6.0-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libdpkg-perl all 1.22.15 [648 kB] Fetched 648 kB in 0s (6491 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm_h6dy7v/libdpkg-perl_1.22.15_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 debhelper all 13.24.1 [920 kB] Fetched 920 kB in 0s (7239 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5spr9ho7/debhelper_13.24.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libnettle8t64 riscv64 3.10.1-1 [335 kB] Fetched 335 kB in 0s (4063 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8zfyd8f3/libnettle8t64_3.10.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libuchardet0 riscv64 0.0.8-1+b2 [68.8 kB] Fetched 68.8 kB in 0s (902 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy2h4qp1b/libuchardet0_0.0.8-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libtasn1-6-dev riscv64 4.20.0-2 [149 kB] Fetched 149 kB in 0s (2096 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07w9svfr/libtasn1-6-dev_4.20.0-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 grep riscv64 3.11-4 [430 kB] Fetched 430 kB in 0s (4806 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq7o41ny4/grep_3.11-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libctf-nobfd0 riscv64 2.44-2 [163 kB] Fetched 163 kB in 0s (2121 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9zfc5fe1/libctf-nobfd0_2.44-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgomp1 riscv64 14.2.0-17 [131 kB] Fetched 131 kB in 0s (1878 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwa04n9b6/libgomp1_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libnghttp2-14 riscv64 1.64.0-1 [77.0 kB] Fetched 77.0 kB in 0s (1122 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_6ty9c2i/libnghttp2-14_1.64.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (3194 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmf19doir/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 coreutils riscv64 9.5-1 [2939 kB] Fetched 2939 kB in 0s (11.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp554fmr6a/coreutils_9.5-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 file riscv64 1:5.45-3+b1 [43.1 kB] Fetched 43.1 kB in 0s (683 kB/s) dpkg-name: info: moved 'file_1%3a5.45-3+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp12dsbqt7/file_5.45-3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgnutls-dane0t64 riscv64 3.8.9-2 [453 kB] Fetched 453 kB in 0s (5031 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkwbiaqqp/libgnutls-dane0t64_3.8.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libnghttp2-dev riscv64 1.64.0-1 [219 kB] Fetched 219 kB in 0s (2742 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmk_eoh1h/libnghttp2-dev_1.64.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 diffutils riscv64 1:3.10-2 [387 kB] Fetched 387 kB in 0s (4335 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-2_riscv64.deb' to '/srv/rebuilderd/tmp/tmp0po8_hc2/diffutils_3.10-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libreadline8t64 riscv64 8.2-6 [169 kB] Fetched 169 kB in 0s (2230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm57jx7ef/libreadline8t64_8.2-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libbz2-dev riscv64 1.0.8-6 [69.9 kB] Fetched 69.9 kB in 0s (976 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzshjdyjj/libbz2-dev_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-all riscv64 3.13.2-1 [1048 B] Fetched 1048 B in 0s (16.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4b1tphre/python3-all_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 util-linux riscv64 2.40.4-5 [1203 kB] Fetched 1203 kB in 0s (8357 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbrd2k7c/util-linux_2.40.4-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Fetched 85.7 kB in 0s (1281 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp8rqxsi2v/zlib1g_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 cpp-14 riscv64 14.2.0-17 [1276 B] Fetched 1276 B in 0s (20.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptpiax3q1/cpp-14_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 gcc riscv64 4:14.2.0-1 [5132 B] Fetched 5132 B in 0s (79.1 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpsvvkwv3d/gcc_14.2.0-1_riscv64.deb' Downloading dependency 1 of 253: libkrb5-dev:riscv64=1.21.3-4 Downloading dependency 2 of 253: dpkg-dev:riscv64=1.22.15 Downloading dependency 3 of 253: g++:riscv64=4:14.2.0-1 Downloading dependency 4 of 253: libgmp10:riscv64=2:6.3.0+dfsg-3 Downloading dependency 5 of 253: libmount1:riscv64=2.40.4-5 Downloading dependency 6 of 253: libstdc++6:riscv64=14.2.0-17 Downloading dependency 7 of 253: python3.13-minimal:riscv64=3.13.2-1 Downloading dependency 8 of 253: libmd0:riscv64=1.1.0-2+b1 Downloading dependency 9 of 253: python3-typing-extensions:riscv64=4.12.2-2 Downloading dependency 10 of 253: gzip:riscv64=1.13-1 Downloading dependency 11 of 253: libpython3-dev:riscv64=3.13.2-1 Downloading dependency 12 of 253: man-db:riscv64=2.13.0-1 Downloading dependency 13 of 253: perl-base:riscv64=5.40.1-2 Downloading dependency 14 of 253: libdebhelper-perl:riscv64=13.24.1 Downloading dependency 15 of 253: python3-iniconfig:riscv64=1.1.1-2 Downloading dependency 16 of 253: libgcc-s1:riscv64=14.2.0-17 Downloading dependency 17 of 253: libssl-dev:riscv64=3.4.1-1 Downloading dependency 18 of 253: libsframe1:riscv64=2.44-2 Downloading dependency 19 of 253: samtools:riscv64=1.21-1 Downloading dependency 20 of 253: cpp:riscv64=4:14.2.0-1 Downloading dependency 21 of 253: binutils-common:riscv64=2.44-2 Downloading dependency 22 of 253: libpython3.13-dev:riscv64=3.13.2-1 Downloading dependency 23 of 253: librtmp1:riscv64=2.4+20151223.gitfa8646d.1-2+b5 Downloading dependency 24 of 253: libattr1:riscv64=1:2.5.2-3 Downloading dependency 25 of 253: libpkgconf3:riscv64=1.8.1-4 Downloading dependency 26 of 253: bash:riscv64=5.2.37-1.1 Downloading dependency 27 of 253: perl:riscv64=5.40.1-2 Downloading dependency 28 of 253: intltool-debian:riscv64=0.35.0+20060710.6 Downloading dependency 29 of 253: libkeyutils1:riscv64=1.6.3-4 Downloading dependency 30 of 253: mawk:riscv64=1.3.4.20250131-1 Downloading dependency 31 of 253: libevent-2.1-7t64:riscv64=2.1.12-stable-10+b1 Downloading dependency 32 of 253: libk5crypto3:riscv64=1.21.3-4 Downloading dependency 33 of 253: bsdextrautils:riscv64=2.40.4-5 Downloading dependency 34 of 253: comerr-dev:riscv64=2.1-1.47.2-1 Downloading dependency 35 of 253: ncurses-base:riscv64=6.5+20250216-1 Downloading dependency 36 of 253: libgprofng0:riscv64=2.44-2 Downloading dependency 37 of 253: libjs-sphinxdoc:riscv64=8.1.3-5 Downloading dependency 38 of 253: libuuid1:riscv64=2.40.4-5 Downloading dependency 39 of 253: ncurses-bin:riscv64=6.5+20250216-1 Downloading dependency 40 of 253: python3-more-itertools:riscv64=10.6.0-1 Downloading dependency 41 of 253: rpcsvc-proto:riscv64=1.4.3-1+b2 Downloading dependency 42 of 253: libdb5.3t64:riscv64=5.3.28+dfsg2-9 Downloading dependency 43 of 253: netbase:riscv64=6.4 Downloading dependency 44 of 253: libcap2:riscv64=1:2.73-4 Downloading dependency 45 of 253: libzstd1:riscv64=1.5.6+dfsg-2 Downloading dependency 46 of 253: python3-packaging:riscv64=24.2-1 Downloading dependency 47 of 253: libexpat1-dev:riscv64=2.6.4-1 Downloading dependency 48 of 253: python3-setuptools:riscv64=75.8.0-1 Downloading dependency 49 of 253: libsasl2-2:riscv64=2.1.28+dfsg1-8+b1 Downloading dependency 50 of 253: libbrotli-dev:riscv64=1.1.0-2+b6 Downloading dependency 51 of 253: libc-bin:riscv64=2.40-7 Downloading dependency 52 of 253: libldap-dev:riscv64=2.6.9+dfsg-1 Downloading dependency 53 of 253: libfile-stripnondeterminism-perl:riscv64=1.14.1-2 Downloading dependency 54 of 253: libkrb5-3:riscv64=1.21.3-4 Downloading dependency 55 of 253: libgssapi-krb5-2:riscv64=1.21.3-4 Downloading dependency 56 of 253: libdebconfclient0:riscv64=0.277 Downloading dependency 57 of 253: libncursesw6:riscv64=6.5+20250216-1 Downloading dependency 58 of 253: libdeflate-dev:riscv64=1.23-1+b1 Downloading dependency 59 of 253: libgdbm6t64:riscv64=1.24-2 Downloading dependency 60 of 253: libpython3-stdlib:riscv64=3.13.2-1 Downloading dependency 61 of 253: dpkg:riscv64=1.22.15 Downloading dependency 62 of 253: libp11-kit-dev:riscv64=0.25.5-3 Downloading dependency 63 of 253: libperl5.40:riscv64=5.40.1-2 Downloading dependency 64 of 253: findutils:riscv64=4.10.0-3 Downloading dependency 65 of 253: libgcc-14-dev:riscv64=14.2.0-17 Downloading dependency 66 of 253: libsasl2-modules-db:riscv64=2.1.28+dfsg1-8+b1 Downloading dependency 67 of 253: libarchive-zip-perl:riscv64=1.68-1 Downloading dependency 68 of 253: bsdutils:riscv64=1:2.40.4-5 Downloading dependency 69 of 253: libsystemd0:riscv64=257.3-1 Downloading dependency 70 of 253: perl-modules-5.40:riscv64=5.40.1-2 Downloading dependency 71 of 253: liblsan0:riscv64=14.2.0-17 Downloading dependency 72 of 253: debconf:riscv64=1.5.89 Downloading dependency 73 of 253: libelf1t64:riscv64=0.192-4 Downloading dependency 74 of 253: libselinux1:riscv64=3.8-4 Downloading dependency 75 of 253: cython3:riscv64=3.0.11+dfsg-2 Downloading dependency 76 of 253: libssl3t64:riscv64=3.4.1-1 Downloading dependency 77 of 253: libatomic1:riscv64=14.2.0-17 Downloading dependency 78 of 253: libc6:riscv64=2.40-7 Downloading dependency 79 of 253: python3-jaraco.context:riscv64=6.0.0-1 Downloading dependency 80 of 253: make:riscv64=4.4.1-1 Downloading dependency 81 of 253: libgmpxx4ldbl:riscv64=2:6.3.0+dfsg-3 Downloading dependency 82 of 253: libgnutls28-dev:riscv64=3.8.9-2 Downloading dependency 83 of 253: build-essential:riscv64=12.12 Downloading dependency 84 of 253: libhtscodecs2:riscv64=1.6.1-2 Downloading dependency 85 of 253: binutils-riscv64-linux-gnu:riscv64=2.44-2 Downloading dependency 86 of 253: m4:riscv64=1.4.19-5 Downloading dependency 87 of 253: libc-dev-bin:riscv64=2.40-7 Downloading dependency 88 of 253: media-types:riscv64=12.0.0 Downloading dependency 89 of 253: libngtcp2-crypto-gnutls8:riscv64=1.9.1-1 Downloading dependency 90 of 253: libzstd-dev:riscv64=1.5.6+dfsg-2 Downloading dependency 91 of 253: dh-python:riscv64=6.20250108 Downloading dependency 92 of 253: libexpat1:riscv64=2.6.4-1 Downloading dependency 93 of 253: g++-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 94 of 253: libisl23:riscv64=0.27-1 Downloading dependency 95 of 253: libpython3.13-minimal:riscv64=3.13.2-1 Downloading dependency 96 of 253: autopoint:riscv64=0.23.1-1 Downloading dependency 97 of 253: libkrb5support0:riscv64=1.21.3-4 Downloading dependency 98 of 253: python3-inflect:riscv64=7.3.1-2 Downloading dependency 99 of 253: g++-14-riscv64-linux-gnu:riscv64=14.2.0-17 Downloading dependency 100 of 253: init-system-helpers:riscv64=1.68 Downloading dependency 101 of 253: python3:riscv64=3.13.2-1 Downloading dependency 102 of 253: gettext:riscv64=0.23.1-1 Downloading dependency 103 of 253: linux-libc-dev:riscv64=6.12.16-1 Downloading dependency 104 of 253: libnghttp3-9:riscv64=1.6.0-2 Downloading dependency 105 of 253: libdpkg-perl:riscv64=1.22.15 Downloading dependency 106 of 253: debhelper:riscv64=13.24.1 Downloading dependency 107 of 253: libnettle8t64:riscv64=3.10.1-1 Downloading dependency 108 of 253: libuchardet0:riscv64=0.0.8-1+b2 Downloading dependency 109 of 253: libtasn1-6-dev:riscv64=4.20.0-2 Downloading dependency 110 of 253: grep:riscv64=3.11-4 Downloading dependency 111 of 253: libctf-nobfd0:riscv64=2.44-2 Downloading dependency 112 of 253: libgomp1:riscv64=14.2.0-17 Downloading dependency 113 of 253: libnghttp2-14:riscv64=1.64.0-1 Downloading dependency 114 of 253: po-debconf:riscv64=1.0.21+nmu1 Downloading dependency 115 of 253: coreutils:riscv64=9.5-1 Downloading dependency 116 of 253: file:riscv64=1:5.45-3+b1 Downloading dependency 117 of 253: libgnutls-dane0t64:riscv64=3.8.9-2 Downloading dependency 118 of 253: libnghttp2-dev:riscv64=1.64.0-1 Downloading dependency 119 of 253: diffutils:riscv64=1:3.10-2 Downloading dependency 120 of 253: libreadline8t64:riscv64=8.2-6 Downloading dependency 121 of 253: libbz2-dev:riscv64=1.0.8-6 Downloading dependency 122 of 253: python3-all:riscv64=3.13.2-1 Downloading dependency 123 of 253: util-linux:riscv64=2.40.4-5 Downloading dependency 124 of 253: zlib1g:riscv64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 125 of 253: cpp-14:riscv64=14.2.0-17 Downloading dependency 126 of 253: gcc:riscv64=4:14.2.0-1 Downloading dependency 127 of 253: libubsan1:riscv64=14.2.0-17Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libubsan1 riscv64 14.2.0-17 [980 kB] Fetched 980 kB in 0s (8182 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7r9dl29n/libubsan1_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-pluggy all 1.5.0-1 [26.9 kB] Fetched 26.9 kB in 0s (420 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkm8rnngj/python3-pluggy_1.5.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 cpp-riscv64-linux-gnu riscv64 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (77.6 kB/s) dpkg-name: info: moved 'cpp-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpvj8w86da/cpp-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libidn2-dev riscv64 2.3.7-2+b1 [155 kB] Fetched 155 kB in 0s (2158 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsj_8hc2g/libidn2-dev_2.3.7-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 xz-utils riscv64 5.6.3-1+b1 [542 kB] Fetched 542 kB in 0s (5868 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3t73rtz/xz-utils_5.6.3-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libcrypt1 riscv64 1:4.4.38-1 [106 kB] Fetched 106 kB in 0s (1398 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp5gqbj2aq/libcrypt1_4.4.38-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libmpfr6 riscv64 4.2.1-1+b2 [659 kB] Fetched 659 kB in 0s (5764 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw5d48g99/libmpfr6_4.2.1-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libblkid1 riscv64 2.40.4-5 [191 kB] Fetched 191 kB in 0s (2562 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnr3n367y/libblkid1_2.40.4-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 nettle-dev riscv64 3.10.1-1 [1523 kB] Fetched 1523 kB in 0s (9857 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe_5l8239/nettle-dev_3.10.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpam-runtime all 1.7.0-3 [248 kB] Fetched 248 kB in 0s (2735 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwk0_omv7/libpam-runtime_1.7.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpsl5t64 riscv64 0.21.2-1.1+b1 [57.3 kB] Fetched 57.3 kB in 0s (869 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi0230saz/libpsl5t64_0.21.2-1.1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libcc1-0 riscv64 14.2.0-17 [40.3 kB] Fetched 40.3 kB in 0s (634 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8yaq09e9/libcc1-0_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libtinfo6 riscv64 6.5+20250216-1 [347 kB] Fetched 347 kB in 0s (3889 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4315zsrr/libtinfo6_6.5+20250216-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-pytest all 8.3.4-1 [250 kB] Fetched 250 kB in 0s (3208 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxm_nf27f/python3-pytest_8.3.4-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libicu72 riscv64 72.1-6 [9392 kB] Fetched 9392 kB in 1s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpivhcdz2e/libicu72_72.1-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpam0g riscv64 1.7.0-3 [70.0 kB] Fetched 70.0 kB in 0s (1056 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0a1i4gb_/libpam0g_1.7.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libmagic-mgc riscv64 1:5.45-3+b1 [314 kB] Fetched 314 kB in 0s (3873 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp2hzdxco_/libmagic-mgc_5.45-3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libctf0 riscv64 2.44-2 [96.1 kB] Fetched 96.1 kB in 0s (1359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzz6v69jx/libctf0_2.44-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpam-modules-bin riscv64 1.7.0-3 [49.0 kB] Fetched 49.0 kB in 0s (745 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ot_rjdy/libpam-modules-bin_1.7.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libstdc++-14-dev riscv64 14.2.0-17 [5274 kB] Fetched 5274 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprs8vzil_/libstdc++-14-dev_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libkadm5srv-mit12 riscv64 1.21.3-4 [54.6 kB] Fetched 54.6 kB in 0s (826 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjc8seu7i/libkadm5srv-mit12_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 sed riscv64 4.9-2 [329 kB] Fetched 329 kB in 0s (3703 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqu5pr8t8/sed_4.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 bcftools riscv64 1.21-1 [771 kB] Fetched 771 kB in 6s (134 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2t5sprlm/bcftools_1.21-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgnutls30t64 riscv64 3.8.9-2 [1445 kB] Fetched 1445 kB in 0s (9206 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdz0pp4eh/libgnutls30t64_3.8.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libbz2-1.0 riscv64 1.0.8-6 [40.3 kB] Fetched 40.3 kB in 0s (624 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0uh6l4ku/libbz2-1.0_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libasan8 riscv64 14.2.0-17 [2366 kB] Fetched 2366 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyj9d5xyz/libasan8_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libcrypt-dev riscv64 1:4.4.38-1 [221 kB] Fetched 221 kB in 0s (2912 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp2h10lty8/libcrypt-dev_4.4.38-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libcurl4-gnutls-dev riscv64 8.12.1-3 [1084 kB] Fetched 1084 kB in 0s (7633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8l32a7g4/libcurl4-gnutls-dev_8.12.1-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (208 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv4nw5fik/python3-autocommand_2.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpython3.13-stdlib riscv64 3.13.2-1 [1942 kB] Fetched 1942 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2b4v6ugy/libpython3.13-stdlib_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 librtmp-dev riscv64 2.4+20151223.gitfa8646d.1-2+b5 [118 kB] Fetched 118 kB in 0s (1688 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphp1rjgac/librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgdbm-compat4t64 riscv64 1.24-2 [50.5 kB] Fetched 50.5 kB in 0s (741 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpas5itu7u/libgdbm-compat4t64_1.24-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 sysvinit-utils riscv64 3.14-3 [33.7 kB] Fetched 33.7 kB in 0s (462 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf1sis9l9/sysvinit-utils_3.14-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpam-modules riscv64 1.7.0-3 [175 kB] Fetched 175 kB in 0s (2127 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpopw5bio8/libpam-modules_1.7.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3.13-dev riscv64 3.13.2-1 [499 kB] Fetched 499 kB in 0s (5018 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcvyo3ehs/python3.13-dev_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libbrotli1 riscv64 1.1.0-2+b6 [353 kB] Fetched 353 kB in 0s (3676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpthikblu4/libbrotli1_1.1.0-2+b6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 gcc-14 riscv64 14.2.0-17 [527 kB] Fetched 527 kB in 0s (5609 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6e9kbhws/gcc-14_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libbinutils riscv64 2.44-2 [520 kB] Fetched 520 kB in 0s (5774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoebm8aak/libbinutils_2.44-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libngtcp2-16 riscv64 1.9.1-1 [124 kB] Fetched 124 kB in 0s (1737 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaihgv7jz/libngtcp2-16_1.9.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpipeline1 riscv64 1.5.8-1 [40.3 kB] Fetched 40.3 kB in 0s (604 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppwi2rgsu/libpipeline1_1.5.8-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libp11-kit0 riscv64 0.25.5-3 [444 kB] Fetched 444 kB in 0s (4695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp56zhn99y/libp11-kit0_0.25.5-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libudev1 riscv64 257.3-1 [151 kB] Fetched 151 kB in 0s (2098 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz_gucmz8/libudev1_257.3-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB] Fetched 978 kB in 0s (7353 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpeqpql87e/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 binutils riscv64 2.44-2 [267 kB] Fetched 267 kB in 0s (3398 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprxqsaxoc/binutils_2.44-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libjansson4 riscv64 2.14-2+b3 [40.7 kB] Fetched 40.7 kB in 0s (636 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq1d_k4w5/libjansson4_2.14-2+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libacl1 riscv64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (532 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph2p1xwhv/libacl1_2.3.2-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-zipp all 3.21.0-1 [10.6 kB] Fetched 10.6 kB in 0s (178 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuc5mbnb2/python3-zipp_3.21.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpsl-dev riscv64 0.21.2-1.1+b1 [87.2 kB] Fetched 87.2 kB in 0s (1320 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplb5y58rs/libpsl-dev_0.21.2-1.1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-dev riscv64 3.13.2-1 [26.1 kB] Fetched 26.1 kB in 0s (401 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw8smpij6/python3-dev_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libsmartcols1 riscv64 2.40.4-5 [152 kB] Fetched 152 kB in 0s (2129 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9eekpeo8/libsmartcols1_2.40.4-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libnghttp3-dev riscv64 1.6.0-2 [169 kB] Fetched 169 kB in 0s (2085 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkx_04cw3/libnghttp3-dev_1.6.0-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (142 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_0kurep9/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 liblzma-dev riscv64 5.6.3-1+b1 [443 kB] Fetched 443 kB in 0s (4890 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdaqf1v_z/liblzma-dev_5.6.3-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 dash riscv64 0.5.12-12 [101 kB] Fetched 101 kB in 0s (1462 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpttejwrrr/dash_0.5.12-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libc6-dev riscv64 2.40-7 [3091 kB] Fetched 3091 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ydhmq1g/libc6-dev_2.40-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 patch riscv64 2.7.6-7+b2 [121 kB] Fetched 121 kB in 0s (1714 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0c4elgm/patch_2.7.6-7+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 base-passwd riscv64 3.6.6 [53.3 kB] Fetched 53.3 kB in 0s (775 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpphuoi2iz/base-passwd_3.6.6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libhts3t64 riscv64 1.21+ds-1 [470 kB] Fetched 470 kB in 0s (5137 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeahkfzk7/libhts3t64_1.21+ds-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (194 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps7nbl_pp/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 hostname riscv64 3.25 [10.7 kB] Fetched 10.7 kB in 0s (168 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl213l8kt/hostname_3.25_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 bzip2 riscv64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (663 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4780mt8s/bzip2_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (1027 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ggp_f3i/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 openssl-provider-legacy riscv64 3.4.1-1 [303 kB] Fetched 303 kB in 0s (3832 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi5bh6eah/openssl-provider-legacy_3.4.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (396 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp16yobs6d/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libdeflate0 riscv64 1.23-1+b1 [38.9 kB] Fetched 38.9 kB in 0s (534 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt_o7909l/libdeflate0_1.23-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libitm1 riscv64 14.2.0-17 [25.7 kB] Fetched 25.7 kB in 0s (388 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp19rq69k0/libitm1_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpython3-all-dev riscv64 3.13.2-1 [1072 B] Fetched 1072 B in 0s (17.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwl2iyyl5/libpython3-all-dev_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libtsan2 riscv64 14.2.0-17 [2242 kB] Fetched 2242 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp74t9gnjg/libtsan2_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 pkgconf-bin riscv64 1.8.1-4 [29.8 kB] Fetched 29.8 kB in 0s (490 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkr5vfs0x/pkgconf-bin_1.8.1-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 tar riscv64 1.35+dfsg-3.1 [822 kB] Fetched 822 kB in 0s (7006 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpziejjwoa/tar_1.35+dfsg-3.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 gcc-riscv64-linux-gnu riscv64 4:14.2.0-1 [1432 B] Fetched 1432 B in 0s (23.4 kB/s) dpkg-name: info: moved 'gcc-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp38dkqv0a/gcc-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libidn2-0 riscv64 2.3.7-2+b1 [129 kB] Fetched 129 kB in 0s (1641 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpexnt9utd/libidn2-0_2.3.7-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 g++-14 riscv64 14.2.0-17 [22.1 kB] Fetched 22.1 kB in 0s (344 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2r0c2b75/g++-14_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 dwz riscv64 0.15-1+b3 [114 kB] Fetched 114 kB in 0s (1382 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvmoka1lu/dwz_0.15-1+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libldap2 riscv64 2.6.9+dfsg-1 [196 kB] Fetched 196 kB in 0s (2493 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpefpd1w5d/libldap2_2.6.9+dfsg-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 gcc-14-riscv64-linux-gnu riscv64 14.2.0-17 [27.1 MB] Fetched 27.1 MB in 2s (16.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3p0y3dk3/gcc-14-riscv64-linux-gnu_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 cpp-14-riscv64-linux-gnu riscv64 14.2.0-17 [14.0 MB] Fetched 14.0 MB in 1s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc7azal9i/cpp-14-riscv64-linux-gnu_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpcre2-8-0 riscv64 10.45-1 [300 kB] Fetched 300 kB in 0s (3066 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd04941zb/libpcre2-8-0_10.45-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libtool all 2.5.4-3 [539 kB] Fetched 539 kB in 0s (3980 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzz5jnnvv/libtool_2.5.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libmpc3 riscv64 1.3.1-1+b3 [56.7 kB] Fetched 56.7 kB in 0s (827 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvlzs3gky/libmpc3_1.3.1-1+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libngtcp2-dev riscv64 1.9.1-1 [354 kB] Fetched 354 kB in 0s (3613 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp97zwevrh/libngtcp2-dev_1.9.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (656 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmnpwqbrg/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libkdb5-10t64 riscv64 1.21.3-4 [43.1 kB] Fetched 43.1 kB in 0s (580 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ir4giya/libkdb5-10t64_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libssh2-1t64 riscv64 1.11.1-1 [249 kB] Fetched 249 kB in 0s (2798 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ssw3ygx/libssh2-1t64_1.11.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libaudit1 riscv64 1:4.0.2-2+b1 [54.1 kB] Fetched 54.1 kB in 0s (735 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpvxei5d00/libaudit1_4.0.2-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Fetched 116 kB in 0s (1337 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq0rpgcda/libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 automake all 1:1.17-3 [862 kB] Fetched 862 kB in 0s (7751 kB/s) dpkg-name: info: moved 'automake_1%3a1.17-3_all.deb' to '/srv/rebuilderd/tmp/tmps_1pbmmw/automake_1.17-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 base-files riscv64 13.6 [72.9 kB] Fetched 72.9 kB in 0s (1110 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3euve90k/base-files_13.6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 krb5-multidev riscv64 1.21.3-4 [126 kB] Fetched 126 kB in 0s (1822 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp79_ecd7l/krb5-multidev_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 gcc-14-base riscv64 14.2.0-17 [49.1 kB] Fetched 49.1 kB in 0s (761 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4jiog993/gcc-14-base_14.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-all-dev riscv64 3.13.2-1 [1068 B] Fetched 1068 B in 0s (15.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa5sf2n9y/python3-all-dev_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libngtcp2-crypto-gnutls-dev riscv64 1.9.1-1 [37.7 kB] Fetched 37.7 kB in 0s (559 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7of3bbay/libngtcp2-crypto-gnutls-dev_1.9.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 debianutils riscv64 5.21 [91.5 kB] Fetched 91.5 kB in 0s (1435 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqyveuhsy/debianutils_5.21_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libhts-dev riscv64 1.21+ds-1 [3136 kB] Fetched 3136 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd1da04m1/libhts-dev_1.21+ds-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libsqlite3-0 riscv64 3.46.1-1 [905 kB] Fetched 905 kB in 0s (7152 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpydnab97b/libsqlite3-0_3.46.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 gettext-base riscv64 0.23.1-1 [243 kB] Fetched 243 kB in 0s (3217 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn_o7jf7b/gettext-base_0.23.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 tzdata all 2025a-2 [259 kB] Fetched 259 kB in 0s (3055 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp11r33j_0/tzdata_2025a-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgssrpc4t64 riscv64 1.21.3-4 [60.6 kB] Fetched 60.6 kB in 0s (869 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpznkhmvqz/libgssrpc4t64_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libmagic1t64 riscv64 1:5.45-3+b1 [115 kB] Fetched 115 kB in 0s (1526 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpgufxckj4/libmagic1t64_5.45-3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (4620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc5votq4k/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 tabix riscv64 1.21+ds-1 [509 kB] Fetched 509 kB in 0s (4992 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyjaxxzz6/tabix_1.21+ds-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (181 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpybjt3s6u/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libffi8 riscv64 3.4.7-1 [21.6 kB] Fetched 21.6 kB in 0s (328 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqnvv27wz/libffi8_3.4.7-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libkadm5clnt-mit12 riscv64 1.21.3-4 [41.9 kB] Fetched 41.9 kB in 0s (663 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptnm_j_m5/libkadm5clnt-mit12_1.21.3-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libssh2-1-dev riscv64 1.11.1-1 [560 kB] Fetched 560 kB in 0s (5645 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0bpa8vvl/libssh2-1-dev_1.11.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-typeguard all 4.4.2-1 [37.3 kB] Fetched 37.3 kB in 0s (594 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdfpnzdod/python3-typeguard_4.4.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (274 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwlpqmq_0/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgmp-dev riscv64 2:6.3.0+dfsg-3 [1024 kB] Fetched 1024 kB in 0s (8089 kB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpdm52qjyi/libgmp-dev_6.3.0+dfsg-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libncurses6 riscv64 6.5+20250216-1 [105 kB] Fetched 105 kB in 0s (1354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1lnk2gj6/libncurses6_6.5+20250216-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libunbound8 riscv64 1.22.0-1+b1 [605 kB] Fetched 605 kB in 0s (5583 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpevnjikom/libunbound8_1.22.0-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libcap-ng0 riscv64 0.8.5-4 [16.9 kB] Fetched 16.9 kB in 0s (269 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkdlmwvys/libcap-ng0_0.8.5-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libpython3.13 riscv64 3.13.2-1 [2160 kB] Fetched 2160 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9byip0ug/libpython3.13_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxq007xqv/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libcom-err2 riscv64 1.47.2-1 [23.7 kB] Fetched 23.7 kB in 0s (363 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa6xduuxx/libcom-err2_1.47.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libgnutls-openssl27t64 riscv64 3.8.9-2 [453 kB] Fetched 453 kB in 0s (4778 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp969lkz1w/libgnutls-openssl27t64_3.8.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 pkgconf riscv64 1.8.1-4 [26.1 kB] Fetched 26.1 kB in 0s (363 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpizrs1kx9/pkgconf_1.8.1-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libxml2 riscv64 2.12.7+dfsg+really2.9.14-0.2+b1 [709 kB] Fetched 709 kB in 0s (6242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjkpfmo2j/libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libtasn1-6 riscv64 4.20.0-2 [50.6 kB] Fetched 50.6 kB in 0s (785 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37z6e54e/libtasn1-6_4.20.0-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libhogweed6t64 riscv64 3.10.1-1 [336 kB] Fetched 336 kB in 0s (3958 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkwcgc_an/libhogweed6t64_3.10.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 groff-base riscv64 1.23.0-7 [1164 kB] Fetched 1164 kB in 0s (8064 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprtbvcl68/groff-base_1.23.0-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Fetched 326 kB in 0s (3770 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpukw2ajyq/libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-minimal riscv64 3.13.2-1 [27.1 kB] Fetched 27.1 kB in 0s (429 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppz1ee0do/python3-minimal_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3.13 riscv64 3.13.2-1 [745 kB] Fetched 745 kB in 0s (6314 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0u032oyw/python3.13_3.13.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 liblzma5 riscv64 5.6.3-1+b1 [277 kB] Fetched 277 kB in 0s (2989 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfcf8d0n5/liblzma5_5.6.3-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libunistring5 riscv64 1.3-1 [474 kB] Fetched 474 kB in 0s (4840 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplcvc9t5i/libunistring5_1.3-1_riscv64.deb' Downloading dependency 128 of 253: python3-pluggy:riscv64=1.5.0-1 Downloading dependency 129 of 253: cpp-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 130 of 253: libidn2-dev:riscv64=2.3.7-2+b1 Downloading dependency 131 of 253: xz-utils:riscv64=5.6.3-1+b1 Downloading dependency 132 of 253: libcrypt1:riscv64=1:4.4.38-1 Downloading dependency 133 of 253: libmpfr6:riscv64=4.2.1-1+b2 Downloading dependency 134 of 253: libblkid1:riscv64=2.40.4-5 Downloading dependency 135 of 253: nettle-dev:riscv64=3.10.1-1 Downloading dependency 136 of 253: libpam-runtime:riscv64=1.7.0-3 Downloading dependency 137 of 253: libpsl5t64:riscv64=0.21.2-1.1+b1 Downloading dependency 138 of 253: libcc1-0:riscv64=14.2.0-17 Downloading dependency 139 of 253: libtinfo6:riscv64=6.5+20250216-1 Downloading dependency 140 of 253: python3-pytest:riscv64=8.3.4-1 Downloading dependency 141 of 253: libicu72:riscv64=72.1-6 Downloading dependency 142 of 253: libpam0g:riscv64=1.7.0-3 Downloading dependency 143 of 253: libmagic-mgc:riscv64=1:5.45-3+b1 Downloading dependency 144 of 253: libctf0:riscv64=2.44-2 Downloading dependency 145 of 253: libpam-modules-bin:riscv64=1.7.0-3 Downloading dependency 146 of 253: libstdc++-14-dev:riscv64=14.2.0-17 Downloading dependency 147 of 253: libkadm5srv-mit12:riscv64=1.21.3-4 Downloading dependency 148 of 253: sed:riscv64=4.9-2 Downloading dependency 149 of 253: bcftools:riscv64=1.21-1 Downloading dependency 150 of 253: libgnutls30t64:riscv64=3.8.9-2 Downloading dependency 151 of 253: libbz2-1.0:riscv64=1.0.8-6 Downloading dependency 152 of 253: libasan8:riscv64=14.2.0-17 Downloading dependency 153 of 253: libcrypt-dev:riscv64=1:4.4.38-1 Downloading dependency 154 of 253: libcurl4-gnutls-dev:riscv64=8.12.1-3 Downloading dependency 155 of 253: python3-autocommand:riscv64=2.2.2-3 Downloading dependency 156 of 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dependency 247 of 253: libjs-jquery:riscv64=3.6.1+dfsg+~3.5.14-1 Downloading dependency 248 of 253: python3-minimal:riscv64=3.13.2-1 Downloading dependency 249 of 253: python3.13:riscv64=3.13.2-1 Downloading dependency 250 of 253: liblzma5:riscv64=5.6.3-1+b1 Downloading dependency 251 of 253: libunistring5:riscv64=1.3-1 Downloading dependency 252 of 253: python3-pkg-resources:riscv64=75.8.0-1Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 python3-pkg-resources all 75.8.0-1 [222 kB] Fetched 222 kB in 0s (3051 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppkxx6oif/python3-pkg-resources_75.8.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250228T025314Z sid/main riscv64 libcurl3t64-gnutls riscv64 8.12.1-3 [373 kB] Fetched 373 kB in 0s (4701 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaj1bxpqp/libcurl3t64-gnutls_8.12.1-3_riscv64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture riscv64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_riscv64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_riscv64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpie7mkeu_/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture riscv64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.isEKqzG5gz as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.isEKqzG5gz 127.0.0.1 - - [10/Apr/2025 10:44:56] code 404, message File not found 127.0.0.1 - - [10/Apr/2025 10:44:56] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:33595 ./ InRelease 127.0.0.1 - - [10/Apr/2025 10:44:56] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:33595 ./ Release [462 B] 127.0.0.1 - - [10/Apr/2025 10:44:57] code 404, message File not found 127.0.0.1 - - [10/Apr/2025 10:44:57] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:33595 ./ Release.gpg 127.0.0.1 - - [10/Apr/2025 10:44:57] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:33595 ./ Packages [310 kB] Fetched 310 kB in 0s (1892 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - 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127.0.0.1 - - [10/Apr/2025 10:45:00] "GET /./ncurses-base_6.5%2b20250216-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:00] "GET /./sysvinit-utils_3.14-3_riscv64.deb HTTP/1.1" 200 - I: extracting archives... 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- [10/Apr/2025 10:45:50] "GET /./libpython3.13-dev_3.13.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:51] "GET /./libpython3-dev_3.13.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:51] "GET /./python3-iniconfig_1.1.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:51] "GET /./libssl-dev_3.4.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libncurses6_6.5%2b20250216-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./samtools_1.21-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libpkgconf3_1.8.1-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libevent-2.1-7t64_2.1.12-stable-10%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libjs-jquery_3.6.1%2bdfsg%2b%7e3.5.14-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libjs-underscore_1.13.4%7edfsg%2b%7e1.11.4-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libjs-sphinxdoc_8.1.3-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-more-itertools_10.6.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-packaging_24.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-autocommand_2.2.2-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-typeguard_4.4.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-inflect_7.3.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-jaraco.context_6.0.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-jaraco.functools_4.1.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-pkg-resources_75.8.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-jaraco.text_4.0.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-zipp_3.21.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./python3-setuptools_75.8.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libbrotli-dev_1.1.0-2%2bb6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libldap-dev_2.6.9%2bdfsg-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libdeflate-dev_1.23-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libp11-kit-dev_0.25.5-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libgmpxx4ldbl_6.3.0%2bdfsg-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libunbound8_1.22.0-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libgnutls-dane0t64_3.8.9-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libgnutls-openssl27t64_3.8.9-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libidn2-dev_2.3.7-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libtasn1-6-dev_4.20.0-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./libgmp-dev_6.3.0%2bdfsg-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:52] "GET /./nettle-dev_3.10.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libgnutls28-dev_3.8.9-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libzstd-dev_1.5.6%2bdfsg-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./dh-python_6.20250108_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./pkgconf-bin_1.8.1-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./pkgconf_1.8.1-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libnghttp2-dev_1.64.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libbz2-dev_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./python3-all_3.13.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./python3-pluggy_1.5.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./python3-pytest_8.3.4-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libnghttp3-dev_1.6.0-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libngtcp2-crypto-gnutls-dev_1.9.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libngtcp2-dev_1.9.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libpsl-dev_0.21.2-1.1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./librtmp-dev_2.4%2b20151223.gitfa8646d.1-2%2bb5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libssh2-1-dev_1.11.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libcurl4-gnutls-dev_8.12.1-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./python3.13-dev_3.13.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./python3-dev_3.13.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./liblzma-dev_5.6.3-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libpython3-all-dev_3.13.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./python3-all-dev_3.13.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:53] "GET /./libhts-dev_1.21%2bds-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:54] "GET /./tabix_1.21%2bds-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [10/Apr/2025 10:45:54] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpie7mkeu_/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.isEKqzG5gz Reading package lists... Building dependency tree... Reading state information... libkrb5-dev is already the newest version (1.21.3-4). libkrb5-dev set to manually installed. dpkg-dev is already the newest version (1.22.15). dpkg-dev set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-3). libmount1 is already the newest version (2.40.4-5). libstdc++6 is already the newest version (14.2.0-17). libstdc++6 set to manually installed. python3.13-minimal is already the newest version (3.13.2-1). python3.13-minimal set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). python3-typing-extensions is already the newest version (4.12.2-2). python3-typing-extensions set to manually installed. gzip is already the newest version (1.13-1). libpython3-dev is already the newest version (3.13.2-1). libpython3-dev set to manually installed. man-db is already the newest version (2.13.0-1). man-db set to manually installed. perl-base is already the newest version (5.40.1-2). libdebhelper-perl is already the newest version (13.24.1). libdebhelper-perl set to manually installed. python3-iniconfig is already the newest version (1.1.1-2). python3-iniconfig set to manually installed. libgcc-s1 is already the newest version (14.2.0-17). libssl-dev is already the newest version (3.4.1-1). libssl-dev set to manually installed. libsframe1 is already the newest version (2.44-2). libsframe1 set to manually installed. samtools is already the newest version (1.21-1). samtools set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. binutils-common is already the newest version (2.44-2). binutils-common set to manually installed. libpython3.13-dev is already the newest version (3.13.2-1). libpython3.13-dev set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp1 set to manually installed. libattr1 is already the newest version (1:2.5.2-3). libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. bash is already the newest version (5.2.37-1.1). perl is already the newest version (5.40.1-2). perl set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libkeyutils1 is already the newest version (1.6.3-4). libkeyutils1 set to manually installed. mawk is already the newest version (1.3.4.20250131-1). libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-2.1-7t64 set to manually installed. libk5crypto3 is already the newest version (1.21.3-4). libk5crypto3 set to manually installed. bsdextrautils is already the newest version (2.40.4-5). bsdextrautils set to manually installed. comerr-dev is already the newest version (2.1-1.47.2-1). comerr-dev set to manually installed. ncurses-base is already the newest version (6.5+20250216-1). libgprofng0 is already the newest version (2.44-2). libgprofng0 set to manually installed. libjs-sphinxdoc is already the newest version (8.1.3-5). libjs-sphinxdoc set to manually installed. libuuid1 is already the newest version (2.40.4-5). ncurses-bin is already the newest version (6.5+20250216-1). python3-more-itertools is already the newest version (10.6.0-1). python3-more-itertools set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b2). rpcsvc-proto set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). netbase is already the newest version (6.4). netbase set to manually installed. libcap2 is already the newest version (1:2.73-4). libzstd1 is already the newest version (1.5.6+dfsg-2). python3-packaging is already the newest version (24.2-1). python3-packaging set to manually installed. libexpat1-dev is already the newest version (2.6.4-1). libexpat1-dev set to manually installed. python3-setuptools is already the newest version (75.8.0-1). python3-setuptools set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-8+b1). libsasl2-2 set to manually installed. libbrotli-dev is already the newest version (1.1.0-2+b6). libbrotli-dev set to manually installed. libc-bin is already the newest version (2.40-7). libldap-dev is already the newest version (2.6.9+dfsg-1). libldap-dev set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. libkrb5-3 is already the newest version (1.21.3-4). libkrb5-3 set to manually installed. libgssapi-krb5-2 is already the newest version (1.21.3-4). libgssapi-krb5-2 set to manually installed. libdebconfclient0 is already the newest version (0.277). libncursesw6 is already the newest version (6.5+20250216-1). libncursesw6 set to manually installed. libdeflate-dev is already the newest version (1.23-1+b1). libdeflate-dev set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. libpython3-stdlib is already the newest version (3.13.2-1). libpython3-stdlib set to manually installed. dpkg is already the newest version (1.22.15). libp11-kit-dev is already the newest version (0.25.5-3). libp11-kit-dev set to manually installed. libperl5.40 is already the newest version (5.40.1-2). libperl5.40 set to manually installed. findutils is already the newest version (4.10.0-3). libgcc-14-dev is already the newest version (14.2.0-17). libgcc-14-dev set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-8+b1). libsasl2-modules-db set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. bsdutils is already the newest version (1:2.40.4-5). libsystemd0 is already the newest version (257.3-1). perl-modules-5.40 is already the newest version (5.40.1-2). perl-modules-5.40 set to manually installed. liblsan0 is already the newest version (14.2.0-17). liblsan0 set to manually installed. debconf is already the newest version (1.5.89). libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. libselinux1 is already the newest version (3.8-4). cython3 is already the newest version (3.0.11+dfsg-2). cython3 set to manually installed. libssl3t64 is already the newest version (3.4.1-1). libatomic1 is already the newest version (14.2.0-17). libatomic1 set to manually installed. libc6 is already the newest version (2.40-7). python3-jaraco.context is already the newest version (6.0.0-1). python3-jaraco.context set to manually installed. make is already the newest version (4.4.1-1). make set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-3). libgmpxx4ldbl set to manually installed. libgnutls28-dev is already the newest version (3.8.9-2). libgnutls28-dev set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libhtscodecs2 is already the newest version (1.6.1-2). libhtscodecs2 set to manually installed. binutils-riscv64-linux-gnu is already the newest version (2.44-2). binutils-riscv64-linux-gnu set to manually installed. m4 is already the newest version (1.4.19-5). m4 set to manually installed. libc-dev-bin is already the newest version (2.40-7). libc-dev-bin set to manually installed. media-types is already the newest version (12.0.0). media-types set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.9.1-1). libngtcp2-crypto-gnutls8 set to manually installed. libzstd-dev is already the newest version (1.5.6+dfsg-2). libzstd-dev set to manually installed. dh-python is already the newest version (6.20250108). dh-python set to manually installed. libexpat1 is already the newest version (2.6.4-1). libexpat1 set to manually installed. g++-riscv64-linux-gnu is already the newest version (4:14.2.0-1). g++-riscv64-linux-gnu set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libpython3.13-minimal is already the newest version (3.13.2-1). libpython3.13-minimal set to manually installed. autopoint is already the newest version (0.23.1-1). autopoint set to manually installed. libkrb5support0 is already the newest version (1.21.3-4). libkrb5support0 set to manually installed. python3-inflect is already the newest version (7.3.1-2). python3-inflect set to manually installed. g++-14-riscv64-linux-gnu is already the newest version (14.2.0-17). g++-14-riscv64-linux-gnu set to manually installed. init-system-helpers is already the newest version (1.68). python3 is already the newest version (3.13.2-1). python3 set to manually installed. gettext is already the newest version (0.23.1-1). gettext set to manually installed. linux-libc-dev is already the newest version (6.12.16-1). linux-libc-dev set to manually installed. libnghttp3-9 is already the newest version (1.6.0-2). libnghttp3-9 set to manually installed. libdpkg-perl is already the newest version (1.22.15). libdpkg-perl set to manually installed. debhelper is already the newest version (13.24.1). debhelper set to manually installed. libnettle8t64 is already the newest version (3.10.1-1). libnettle8t64 set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. libtasn1-6-dev is already the newest version (4.20.0-2). libtasn1-6-dev set to manually installed. grep is already the newest version (3.11-4). libctf-nobfd0 is already the newest version (2.44-2). libctf-nobfd0 set to manually installed. libgomp1 is already the newest version (14.2.0-17). libgomp1 set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1). libnghttp2-14 set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. coreutils is already the newest version (9.5-1). file is already the newest version (1:5.45-3+b1). file set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.9-2). libgnutls-dane0t64 set to manually installed. libnghttp2-dev is already the newest version (1.64.0-1). libnghttp2-dev set to manually installed. diffutils is already the newest version (1:3.10-2). libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. libbz2-dev is already the newest version (1.0.8-6). libbz2-dev set to manually installed. python3-all is already the newest version (3.13.2-1). python3-all set to manually installed. util-linux is already the newest version (2.40.4-5). zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). cpp-14 is already the newest version (14.2.0-17). cpp-14 set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. libubsan1 is already the newest version (14.2.0-17). libubsan1 set to manually installed. python3-pluggy is already the newest version (1.5.0-1). python3-pluggy set to manually installed. cpp-riscv64-linux-gnu is already the newest version (4:14.2.0-1). cpp-riscv64-linux-gnu set to manually installed. libidn2-dev is already the newest version (2.3.7-2+b1). libidn2-dev set to manually installed. xz-utils is already the newest version (5.6.3-1+b1). xz-utils set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). libmpfr6 is already the newest version (4.2.1-1+b2). libmpfr6 set to manually installed. libblkid1 is already the newest version (2.40.4-5). nettle-dev is already the newest version (3.10.1-1). nettle-dev set to manually installed. libpam-runtime is already the newest version (1.7.0-3). libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libcc1-0 is already the newest version (14.2.0-17). libcc1-0 set to manually installed. libtinfo6 is already the newest version (6.5+20250216-1). python3-pytest is already the newest version (8.3.4-1). python3-pytest set to manually installed. libicu72 is already the newest version (72.1-6). libicu72 set to manually installed. libpam0g is already the newest version (1.7.0-3). libmagic-mgc is already the newest version (1:5.45-3+b1). libmagic-mgc set to manually installed. libctf0 is already the newest version (2.44-2). libctf0 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-3). libstdc++-14-dev is already the newest version (14.2.0-17). libstdc++-14-dev set to manually installed. libkadm5srv-mit12 is already the newest version (1.21.3-4). libkadm5srv-mit12 set to manually installed. sed is already the newest version (4.9-2). bcftools is already the newest version (1.21-1). bcftools set to manually installed. libgnutls30t64 is already the newest version (3.8.9-2). libgnutls30t64 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libasan8 is already the newest version (14.2.0-17). libasan8 set to manually installed. libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libcurl4-gnutls-dev is already the newest version (8.12.1-3). libcurl4-gnutls-dev set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. libpython3.13-stdlib is already the newest version (3.13.2-1). libpython3.13-stdlib set to manually installed. librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp-dev set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. sysvinit-utils is already the newest version (3.14-3). libpam-modules is already the newest version (1.7.0-3). python3.13-dev is already the newest version (3.13.2-1). python3.13-dev set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b6). libbrotli1 set to manually installed. gcc-14 is already the newest version (14.2.0-17). gcc-14 set to manually installed. libbinutils is already the newest version (2.44-2). libbinutils set to manually installed. libngtcp2-16 is already the newest version (1.9.1-1). libngtcp2-16 set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. libudev1 is already the newest version (257.3-1). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. binutils is already the newest version (2.44-2). binutils set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). python3-zipp is already the newest version (3.21.0-1). python3-zipp set to manually installed. libpsl-dev is already the newest version (0.21.2-1.1+b1). libpsl-dev set to manually installed. python3-dev is already the newest version (3.13.2-1). python3-dev set to manually installed. libsmartcols1 is already the newest version (2.40.4-5). libnghttp3-dev is already the newest version (1.6.0-2). libnghttp3-dev set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. liblzma-dev is already the newest version (5.6.3-1+b1). liblzma-dev set to manually installed. dash is already the newest version (0.5.12-12). libc6-dev is already the newest version (2.40-7). libc6-dev set to manually installed. patch is already the newest version (2.7.6-7+b2). patch set to manually installed. base-passwd is already the newest version (3.6.6). libhts3t64 is already the newest version (1.21+ds-1). libhts3t64 set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. hostname is already the newest version (3.25). bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. openssl-provider-legacy is already the newest version (3.4.1-1). sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. libdeflate0 is already the newest version (1.23-1+b1). libdeflate0 set to manually installed. libitm1 is already the newest version (14.2.0-17). libitm1 set to manually installed. libpython3-all-dev is already the newest version (3.13.2-1). libpython3-all-dev set to manually installed. libtsan2 is already the newest version (14.2.0-17). libtsan2 set to manually installed. pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. tar is already the newest version (1.35+dfsg-3.1). gcc-riscv64-linux-gnu is already the newest version (4:14.2.0-1). gcc-riscv64-linux-gnu set to manually installed. libidn2-0 is already the newest version (2.3.7-2+b1). libidn2-0 set to manually installed. g++-14 is already the newest version (14.2.0-17). g++-14 set to manually installed. dwz is already the newest version (0.15-1+b3). dwz set to manually installed. libldap2 is already the newest version (2.6.9+dfsg-1). libldap2 set to manually installed. gcc-14-riscv64-linux-gnu is already the newest version (14.2.0-17). gcc-14-riscv64-linux-gnu set to manually installed. cpp-14-riscv64-linux-gnu is already the newest version (14.2.0-17). cpp-14-riscv64-linux-gnu set to manually installed. libpcre2-8-0 is already the newest version (10.45-1). libtool is already the newest version (2.5.4-3). libtool set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. libngtcp2-dev is already the newest version (1.9.1-1). libngtcp2-dev set to manually installed. autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. libkdb5-10t64 is already the newest version (1.21.3-4). libkdb5-10t64 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b1). libjs-underscore is already the newest version (1.13.4~dfsg+~1.11.4-3). libjs-underscore set to manually installed. automake is already the newest version (1:1.17-3). automake set to manually installed. base-files is already the newest version (13.6). krb5-multidev is already the newest version (1.21.3-4). krb5-multidev set to manually installed. gcc-14-base is already the newest version (14.2.0-17). python3-all-dev is already the newest version (3.13.2-1). python3-all-dev set to manually installed. libngtcp2-crypto-gnutls-dev is already the newest version (1.9.1-1). libngtcp2-crypto-gnutls-dev set to manually installed. debianutils is already the newest version (5.21). libhts-dev is already the newest version (1.21+ds-1). libhts-dev set to manually installed. libsqlite3-0 is already the newest version (3.46.1-1). libsqlite3-0 set to manually installed. gettext-base is already the newest version (0.23.1-1). gettext-base set to manually installed. tzdata is already the newest version (2025a-2). tzdata set to manually installed. libgssrpc4t64 is already the newest version (1.21.3-4). libgssrpc4t64 set to manually installed. libmagic1t64 is already the newest version (1:5.45-3+b1). libmagic1t64 set to manually installed. autoconf is already the newest version (2.72-3). autoconf set to manually installed. tabix is already the newest version (1.21+ds-1). tabix set to manually installed. libaudit-common is already the newest version (1:4.0.2-2). libffi8 is already the newest version (3.4.7-1). libffi8 set to manually installed. libkadm5clnt-mit12 is already the newest version (1.21.3-4). libkadm5clnt-mit12 set to manually installed. libssh2-1-dev is already the newest version (1.11.1-1). libssh2-1-dev set to manually installed. python3-typeguard is already the newest version (4.4.2-1). python3-typeguard set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-3). libgmp-dev set to manually installed. libncurses6 is already the newest version (6.5+20250216-1). libncurses6 set to manually installed. libunbound8 is already the newest version (1.22.0-1+b1). libunbound8 set to manually installed. libcap-ng0 is already the newest version (0.8.5-4). libpython3.13 is already the newest version (3.13.2-1). libpython3.13 set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libcom-err2 is already the newest version (1.47.2-1). libcom-err2 set to manually installed. libgnutls-openssl27t64 is already the newest version (3.8.9-2). libgnutls-openssl27t64 set to manually installed. pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.2+b1). libxml2 set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. libhogweed6t64 is already the newest version (3.10.1-1). libhogweed6t64 set to manually installed. groff-base is already the newest version (1.23.0-7). groff-base set to manually installed. libjs-jquery is already the newest version (3.6.1+dfsg+~3.5.14-1). libjs-jquery set to manually installed. python3-minimal is already the newest version (3.13.2-1). python3-minimal set to manually installed. python3.13 is already the newest version (3.13.2-1). python3.13 set to manually installed. liblzma5 is already the newest version (5.6.3-1+b1). libunistring5 is already the newest version (1.3-1). libunistring5 set to manually installed. python3-pkg-resources is already the newest version (75.8.0-1). python3-pkg-resources set to manually installed. libcurl3t64-gnutls is already the newest version (8.12.1-3). libcurl3t64-gnutls set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.isEKqzG5gz (Reading database ... 18371 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.isEKqzG5gz I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.isEKqzG5gz I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.isEKqzG5gz... I: success in 284.3040 seconds Downloading dependency 253 of 253: libcurl3t64-gnutls:riscv64=8.12.1-3 env --chdir=/tmp/rebuilderdFDwHj2/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1740691416 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildQZ3wjC/debrebuild.sbuildrc.qxfqY6pluTF_ sbuild --build=riscv64 --host=riscv64 --no-source --arch-any --no-arch-all --binNMU-changelog= python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for riscv64; no source changes. * Rebuild with Python 3.13 only -- riscv64 Build Daemon (rv-manda-01) Thu, 27 Feb 2025 21:23:36 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildQZ3wjC/debrebuild.tar.tGafqDABP6xu --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=python-pysam-0.23.0+ds /tmp/rebuilderdFDwHj2/inputs/python-pysam_0.23.0+ds-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.88.5 (01 March 2025) on localhost +==============================================================================+ | python-pysam 0.23.0+ds-1+b1 (riscv64) Thu, 10 Apr 2025 02:49:42 +0000 | +==============================================================================+ Package: python-pysam Version: 0.23.0+ds-1+b1 Source Version: 0.23.0+ds-1 Distribution: unstable Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildQZ3wjC/debrebuild.tar.tGafqDABP6xu to /srv/rebuilderd/tmp/tmp.sbuild.NYOs9gJ9jI... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Thu, 10 Apr 2025 02:50:41 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /tmp/rebuilderdFDwHj2/inputs/python-pysam_0.23.0+ds-1.dsc exists in /tmp/rebuilderdFDwHj2/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 10 Apr 2025 02:50:52 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-uviy0e/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Thu, 10 Apr 2025 02:51:21 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment Thu, 10 Apr 2025 02:51:24 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.21-riscv64 #1 SMP Debian 6.12.21-1 (2025-03-30) riscv64 (riscv64) Toolchain package versions: binutils_2.44-2 dpkg-dev_1.22.15 g++-14_14.2.0-17 gcc-14_14.2.0-17 libc6-dev_2.40-7 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 linux-libc-dev_6.12.16-1 Package versions: autoconf_2.72-3 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1.1 bcftools_1.21-1 binutils_2.44-2 binutils-common_2.44-2 binutils-riscv64-linux-gnu_2.44-2 bsdextrautils_2.40.4-5 bsdutils_1:2.40.4-5 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-1 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-17 cpp-14-riscv64-linux-gnu_14.2.0-17 cpp-riscv64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-2 dash_0.5.12-12 debconf_1.5.89 debhelper_13.24.1 debianutils_5.21 dh-autoreconf_20 dh-python_6.20250108 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-2 dpkg_1.22.15 dpkg-dev_1.22.15 dwz_0.15-1+b3 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-17 g++-14-riscv64-linux-gnu_14.2.0-17 g++-riscv64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-17 gcc-14-base_14.2.0-17 gcc-14-riscv64-linux-gnu_14.2.0-17 gcc-riscv64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-4 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-17 libatomic1_14.2.0-17 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libbinutils_2.44-2 libblkid1_2.40.4-5 libbrotli-dev_1.1.0-2+b6 libbrotli1_1.1.0-2+b6 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-7 libc-dev-bin_2.40-7 libc6_2.40-7 libc6-dev_2.40-7 libcap-ng0_0.8.5-4 libcap2_1:2.73-4 libcc1-0_14.2.0-17 libcom-err2_1.47.2-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-2 libctf0_2.44-2 libcurl3t64-gnutls_8.12.1-3 libcurl4-gnutls-dev_8.12.1-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdeflate-dev_1.23-1+b1 libdeflate0_1.23-1+b1 libdpkg-perl_1.22.15 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.6.4-1 libexpat1-dev_2.6.4-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-17 libgcc-s1_14.2.0-17 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-17 libgprofng0_2.44-2 libgssapi-krb5-2_1.21.3-4 libgssrpc4t64_1.21.3-4 libhogweed6t64_3.10.1-1 libhts-dev_1.21+ds-1 libhts3t64_1.21+ds-1 libhtscodecs2_1.6.1-2 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libidn2-dev_2.3.7-2+b1 libisl23_0.27-1 libitm1_14.2.0-17 libjansson4_2.14-2+b3 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_8.1.3-5 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.21.3-4 libkadm5clnt-mit12_1.21.3-4 libkadm5srv-mit12_1.21.3-4 libkdb5-10t64_1.21.3-4 libkeyutils1_1.6.3-4 libkrb5-3_1.21.3-4 libkrb5-dev_1.21.3-4 libkrb5support0_1.21.3-4 libldap-dev_2.6.9+dfsg-1 libldap2_2.6.9+dfsg-1 liblsan0_14.2.0-17 liblzma-dev_5.6.3-1+b1 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.4-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncurses6_6.5+20250216-1 libncursesw6_6.5+20250216-1 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1 libnghttp2-dev_1.64.0-1 libnghttp3-9_1.6.0-2 libnghttp3-dev_1.6.0-2 libngtcp2-16_1.9.1-1 libngtcp2-crypto-gnutls-dev_1.9.1-1 libngtcp2-crypto-gnutls8_1.9.1-1 libngtcp2-dev_1.9.1-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpython3-all-dev_3.13.2-1 libpython3-dev_3.13.2-1 libpython3-stdlib_3.13.2-1 libpython3.13_3.13.2-1 libpython3.13-dev_3.13.2-1 libpython3.13-minimal_3.13.2-1 libpython3.13-stdlib_3.13.2-1 libreadline8t64_8.2-6 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-8+b1 libsasl2-modules-db_2.1.28+dfsg1-8+b1 libselinux1_3.8-4 libsframe1_2.44-2 libsmartcols1_2.40.4-5 libsqlite3-0_3.46.1-1 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.4.1-1 libssl3t64_3.4.1-1 libstdc++-14-dev_14.2.0-17 libstdc++6_14.2.0-17 libsystemd0_257.3-1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-1 libtool_2.5.4-3 libtsan2_14.2.0-17 libubsan1_14.2.0-17 libuchardet0_0.0.8-1+b2 libudev1_257.3-1 libunbound8_1.22.0-1+b1 libunistring5_1.3-1 libuuid1_2.40.4-5 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libzstd-dev_1.5.6+dfsg-2 libzstd1_1.5.6+dfsg-2 linux-libc-dev_6.12.16-1 m4_1.4.19-5 make_4.4.1-1 man-db_2.13.0-1 mawk_1.3.4.20250131-1 media-types_12.0.0 ncurses-base_6.5+20250216-1 ncurses-bin_6.5+20250216-1 netbase_6.4 nettle-dev_3.10.1-1 openssl-provider-legacy_3.4.1-1 patch_2.7.6-7+b2 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 python3_3.13.2-1 python3-all_3.13.2-1 python3-all-dev_3.13.2-1 python3-autocommand_2.2.2-3 python3-dev_3.13.2-1 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.2-1 python3-more-itertools_10.6.0-1 python3-packaging_24.2-1 python3-pkg-resources_75.8.0-1 python3-pluggy_1.5.0-1 python3-pytest_8.3.4-1 python3-setuptools_75.8.0-1 python3-typeguard_4.4.2-1 python3-typing-extensions_4.12.2-2 python3-zipp_3.21.0-1 python3.13_3.13.2-1 python3.13-dev_3.13.2-1 python3.13-minimal_3.13.2-1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1+b2 samtools_1.21-1 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.14-3 tabix_1.21+ds-1 tar_1.35+dfsg-3.1 tzdata_2025a-2 util-linux_2.40.4-5 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Thu, 10 Apr 2025 02:51:25 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pysam Binary: python3-pysam, python-pysam-tests Architecture: any all Version: 0.23.0+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://pysam.readthedocs.org/en/latest Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pysam Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix , samtools , bcftools , python3-pytest Package-List: python-pysam-tests deb python optional arch=all python3-pysam deb python optional arch=any Checksums-Sha1: d6643c33e0ed4b826b9fe1697c7e4b9a3fe07276 1519052 python-pysam_0.23.0+ds.orig.tar.xz 8d5169d2640519f5b5d265b7988a8a5bb66593ef 10632 python-pysam_0.23.0+ds-1.debian.tar.xz Checksums-Sha256: c54835d4df32a73252a8838ce97229e6e07a83f91a44991c129fde9d2edd31dd 1519052 python-pysam_0.23.0+ds.orig.tar.xz 9934b1ce981a0cd6f31ab40e7c3652af63d8058e2c1706cda66014fc6c7f2440 10632 python-pysam_0.23.0+ds-1.debian.tar.xz Files: 13b8d89edd6fcb0dd9e1316d392a56bc 1519052 python-pysam_0.23.0+ds.orig.tar.xz 0d2415af082e79088a530fe11a211864 10632 python-pysam_0.23.0+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmelKSwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrdPQ//dxdCdaICPj/xp78i9KL3UTutP723 TuffrFwDTFbW+ObV4d9EBlaztS2mCi2Hkfy8ejBa79m6kQQvDHnyQCdTy4exwocJ Z+VCvlXqRH1ZaqgdSFyW1h4z5MxM2uKWEzzGvI5eV+uvHRi1hBmaSujfQIO4hLB7 3M5Dv/9j9pxS4EdGEc0214TeCNSTE1MTXDTi/gqYJ7bdqf9my04vqe6lh46DokmR 03Bdrncht//Ooj56Y8FK2zMbFSZExrP9lCnoC0wWlNSgTnJ8hgy1LkeEjZOB7RD8 BMJ096gvrwGOLC3w3IsulLqVlWkBZk90C1gH2XRM0cYM+ID6yFzJZgNgIJQcdtt5 iMXnGtCFlg8NashNFZMQv4GXSImYbNVprADpohUifzPdrbfmZ9nl3uUYZqe+OPNC uyU3o7YNuMY6JWfFuEfL7TtbYHjVsysqbB/Kk5vVVCttPYozyFG5lEKgb473Kt5Z M7Rt1ECBhHFQoBOPVFzfzbO2nrxn1DvwFE0nJQGBiMB51jBb+YRVQuHb+Z/uVf7T 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HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1740691416 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package python-pysam dpkg-buildpackage: info: source version 0.23.0+ds-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by riscv64 Build Daemon (rv-manda-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean cd tests/pysam_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running clean removing '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -f \ pysam/config.py \ pysam/config.h \ pysam/lib*.c \ samtools/config.h \ bcftools/config.h rm -rf pysam.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running build running build_py creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include copying pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include running egg_info creating pysam.egg-info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt writing manifest file 'pysam.egg-info/SOURCES.txt' reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension creating build/temp.linux-riscv64-cpython-313/pysam riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/htslib_util.c -o build/temp.linux-riscv64-cpython-313/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libchtslib.c -o build/temp.linux-riscv64-cpython-313/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libchtslib.c:2924:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2924 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/htslib_util.o build/temp.linux-riscv64-cpython-313/pysam/libchtslib.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-riscv64-cpython-313/samtools creating build/temp.linux-riscv64-cpython-313/samtools/lz4 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcsamtools.c -o build/temp.linux-riscv64-cpython-313/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_color.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_import.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_index.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_md.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_split.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bamtk.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bedcov.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/bedidx.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/coverage.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/cram_size.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/cut_target.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/dict.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/faidx.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/lz4/lz4.c -o build/temp.linux-riscv64-cpython-313/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/padding.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/phase.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/reference.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/reset.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sam_view.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/sample.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/samtools.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/stats.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcsamtools.o build/temp.linux-riscv64-cpython-313/samtools/amplicon_stats.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam2depth.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_addrprg.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_aux.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_cat.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_color.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_consensus.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_fastq.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_flags.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_import.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_index.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_lpileup.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_markdup.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_mate.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_md.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_plbuf.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_plcmd.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_quickcheck.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_reheader.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_rmdup.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_rmdupse.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_samples.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_sort.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_split.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_stat.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bamshuf.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bamtk.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bedcov.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bedidx.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/consensus_pileup.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/coverage.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/cram_size.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/cut_target.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/dict.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/faidx.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/lz4/lz4.o build/temp.linux-riscv64-cpython-313/samtools/padding.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/phase.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/reference.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/reset.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/sam_opts.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/sam_utils.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/sam_view.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/sample.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/samtools.pysam.o build/temp.linux-riscv64-cpython-313/samtools/stats.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/stats_isize.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/tmp_file.c.pysam.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-riscv64-cpython-313/bcftools riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/HMM.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/abuf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bcftools.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/bin.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/ccall.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/cols.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/convert.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/csq.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/dist.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/edlib.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/em.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/extsort.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/filter.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/gff.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/hclust.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/kmin.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/main.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/mcall.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/prob1.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/regidx.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/reheader.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/tabix.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c bcftools/version.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbcftools.c -o build/temp.linux-riscv64-cpython-313/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/bcftools/HMM.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/abuf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam_sample.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bcftools.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bin.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/ccall.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/cols.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/consensus.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/convert.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/csq.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/dist.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/edlib.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/em.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/extsort.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/filter.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/gff.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/gvcf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/hclust.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/kmin.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/main.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/mcall.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/mpileup.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/ploidy.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/prob1.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/read_consensus.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/regidx.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/reheader.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/smpl_ilist.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/str_finder.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/tabix.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/tsv2vcf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfannotate.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfbuf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfcall.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfcnv.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfconcat.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfconvert.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcffilter.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfhead.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfindex.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfisec.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfmerge.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfnorm.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfplugin.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfquery.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfroh.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfsom.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfsort.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfstats.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfview.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcmp.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/version.c.pysam.o build/temp.linux-riscv64-cpython-313/pysam/libcbcftools.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcutils.c -o build/temp.linux-riscv64-cpython-313/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcutils.c:2473:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2473 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/pysam_util.c -o build/temp.linux-riscv64-cpython-313/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcutils.o build/temp.linux-riscv64-cpython-313/pysam/pysam_util.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcsamtools.cpython-313-riscv64-linux-gnu -lcbcftools.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignmentfile.pyx:2567:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2572:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2577:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2616:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2621:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2626:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcalignmentfile.c -o build/temp.linux-riscv64-cpython-313/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcalignmentfile.c:3785:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3785 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’: pysam/libcalignmentfile.c:20533:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20533 | (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’: pysam/libcalignmentfile.c:37169:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37169 | (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcalignmentfile.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcsamfile.c -o build/temp.linux-riscv64-cpython-313/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcsamfile.c:3296:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3296 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcsamfile.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcalignedsegment.c -o build/temp.linux-riscv64-cpython-313/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcalignedsegment.c:4315:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 4315 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcalignedsegment.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libctabix.c -o build/temp.linux-riscv64-cpython-313/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libctabix.c:3568:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3568 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libctabix.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcfaidx.c -o build/temp.linux-riscv64-cpython-313/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcfaidx.c:3030:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3030 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcfaidx.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbcf.c -o build/temp.linux-riscv64-cpython-313/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcbcf.c:4107:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 4107 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’: pysam/libcbcf.c:85824:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85824 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’: pysam/libcbcf.c:80500:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80500 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’: pysam/libcbcf.c:44209:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44209 | bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c:44235:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44235 | bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’: pysam/libcbcf.c:80195:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80195 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcbcf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcbgzf.c -o build/temp.linux-riscv64-cpython-313/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcbgzf.c:2482:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2482 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcbgzf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libctabixproxies.c -o build/temp.linux-riscv64-cpython-313/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libctabixproxies.c:3086:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3086 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libctabixproxies.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1083:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.0+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools -I/build/reproducible-path/python-pysam-0.23.0+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.0+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.0+ds -I/usr/include/python3.13 -c pysam/libcvcf.c -o build/temp.linux-riscv64-cpython-313/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcvcf.c:3697:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3697 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcvcf.o -L/build/reproducible-path/python-pysam-0.23.0+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds' cd tests/pysam_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' samtools faidx ex1.fa samtools view --no-PG -bo ex1.bam -t ex1.fa.fai ex1.sam.gz samtools mpileup -f ex1.fa ex1.bam | gzip > ex1.pileup.gz [mpileup] 1 samples in 1 input files gunzip < ex1.sam.gz > ex1.sam samtools index ex1.bam samtools view --no-PG -h ex1.bam | gzip > ex2.sam.gz gunzip < ex2.sam.gz > ex2.sam samtools view --no-PG -bo ex2.bam ex2.sam samtools index ex2.bam samtools calmd --no-PG --output-fmt BAM ex2.bam ex1.fa > with_md.sam.gz [bam_fillmd1] different NM for read 'EAS139_11:7:46:695:738': 3 -> 8 [bam_fillmd1] different NM for read 'EAS218_4:1:48:9:409': 0 -> 5 [bam_fillmd1] different NM for read 'B7_591:7:200:192:373': 0 -> 5 [bam_fillmd1] different NM for read 'EAS56_65:1:163:846:223': 0 -> 5 [bam_fillmd1] different NM for read 'EAS114_30:7:283:799:560': 0 -> 5 [bam_fillmd1] different NM for read 'B7_595:4:84:802:737': 0 -> 4 [bam_fillmd1] different NM for read 'EAS51_66:5:308:400:602': 0 -> 3 [bam_fillmd1] different NM for read 'EAS54_81:2:285:367:932': 0 -> 3 [bam_fillmd1] different NM for read 'EAS114_39:1:70:147:84': 0 -> 3 [bam_fillmd1] different NM for read 'EAS56_53:1:124:243:35': 2 -> 5 [bam_fillmd1] different NM for read 'EAS1_103:2:226:302:758': 2 -> 3 [bam_fillmd1] different NM for read 'EAS114_28:6:175:705:982': 1 -> 0 [bam_fillmd1] different NM for read 'EAS51_64:4:179:389:585': 7 -> 8 [bam_fillmd1] different NM for read 'B7_589:1:122:337:968': 3 -> 2 [bam_fillmd1] different NM for read 'B7_610:4:15:805:420': 4 -> 5 [bam_fillmd1] different NM for read 'B7_591:2:279:124:41': 2 -> 4 [bam_fillmd1] different NM for read 'EAS112_32:8:89:254:332': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:7:103:731:697': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_11:2:71:83:58': 0 -> 2 [bam_fillmd1] different NM for read 'EAS192_3:4:63:5:870': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:29:1822:1881': 0 -> 2 [bam_fillmd1] different NM for read 'EAS188_7:3:15:568:42': 2 -> 1 [bam_fillmd1] different NM for read 'EAS1_95:4:176:971:874': 0 -> 1 [bam_fillmd1] different NM for read 'EAS1_99:1:34:649:318': 3 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:4:61:346:384': 3 -> 4 [bam_fillmd1] different NM for read 'B7_597:6:20:592:496': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:4:38:999:463': 2 -> 1 [bam_fillmd1] different NM for read 'EAS114_28:5:23:944:377': 0 -> 3 [bam_fillmd1] different NM for read 'EAS219_1:3:90:219:528': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_108:5:89:942:84': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:6:159:493:275': 0 -> 5 [bam_fillmd1] different NM for read 'EAS139_11:1:81:1019:558': 0 -> 5 [bam_fillmd1] different NM for read 'EAS51_62:7:162:195:761': 0 -> 4 [bam_fillmd1] different NM for read 'B7_597:3:115:646:430': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:243:209:110': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:2:266:994:429': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:5:32:461:154': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:6:7:492:1088': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_95:6:174:650:125': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:6:89:457:591': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_39:2:38:670:564': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_7:4:92:693:228': 1 -> 6 [bam_fillmd1] different NM for read 'EAS218_1:4:61:1369:440': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_26:4:123:1001:580': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:4:10:1312:1558': 0 -> 4 [bam_fillmd1] different NM for read 'EAS220_1:8:45:178:1321': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:5:125:137:58': 0 -> 4 [bam_fillmd1] different NM for read 'EAS192_3:3:285:349:797': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_45:5:56:1757:1319': 0 -> 4 [bam_fillmd1] different NM for read 'B7_591:3:291:404:199': 0 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:7:159:253:353': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_57:1:122:38:103': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_4:5:103:870:105': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:8:24:718:322': 3 -> 7 [bam_fillmd1] different NM for read 'EAS51_64:6:118:41:489': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_61:3:165:665:220': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:238:803:383': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:3:232:364:583': 0 -> 3 [bam_fillmd1] different NM for read 'B7_595:2:29:729:70': 3 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:220:809:850': 4 -> 6 [bam_fillmd1] different NM for read 'EAS54_65:2:264:157:150': 3 -> 5 [bam_fillmd1] different NM for read 'B7_595:8:26:242:35': 2 -> 1 [bam_fillmd1] different NM for read 'B7_610:7:34:144:868': 4 -> 5 [bam_fillmd1] different NM for read 'B7_597:8:147:360:141': 1 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:82:154:1333': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_63:3:41:468:459': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_97:4:274:287:423': 0 -> 1 [bam_fillmd1] different NM for read 'EAS114_30:2:303:428:326': 0 -> 1 [bam_fillmd1] different NM for read 'EAS54_71:8:105:854:975': 0 -> 3 gunzip < with_md.sam.gz > with_md.sam samtools view --no-PG -bo with_md.bam with_md.sam [W::bam_hdr_read] EOF marker is absent. The input is probably truncated samtools index with_md.bam samtools view --no-PG -bu -o uncompressed.bam ex2.sam samtools view --no-PG -bo MM-chebi.bam MM-chebi.sam samtools view --no-PG -bo MM-double.bam MM-double.sam samtools view --no-PG -bo MM-explicit.bam MM-explicit.sam samtools view --no-PG -bo MM-multi.bam MM-multi.sam samtools view --no-PG -bo MM-orient.bam MM-orient.sam samtools view --no-PG -bo ex10.bam ex10.sam samtools view --no-PG -bo ex3.bam ex3.sam samtools view --no-PG -bo ex4.bam ex4.sam samtools view --no-PG -bo ex5.bam ex5.sam samtools view --no-PG -bo ex6.bam ex6.sam samtools view --no-PG -bo ex8.bam ex8.sam samtools view --no-PG -bo ex9_fail.bam ex9_fail.sam samtools view --no-PG -bo ex9_nofail.bam ex9_nofail.sam samtools view --no-PG -bo ex_spliced.bam ex_spliced.sam samtools view --no-PG -bo example_aligned_pairs.bam example_aligned_pairs.sam samtools view --no-PG -bo example_btag.bam example_btag.sam samtools view --no-PG -bo example_dash_in_chr.bam example_dash_in_chr.sam samtools view --no-PG -bo example_empty_header.bam example_empty_header.sam samtools view --no-PG -bo example_empty_with_header.bam example_empty_with_header.sam samtools view --no-PG -bo example_reverse_complement.bam example_reverse_complement.sam touch tmp.list samtools view --no-PG -bo example_unmapped_reads_no_sq.bam -t tmp.list example_unmapped_reads_no_sq.sam rm -f tmp.list samtools view --no-PG -bo issue100.bam issue100.sam samtools view --no-PG -bo rg_with_tab.bam rg_with_tab.sam samtools view --no-PG -bo softclip.bam softclip.sam samtools view --no-PG -bo tag_bug.bam tag_bug.sam samtools view --no-PG -bo test_mapped_unmapped.bam test_mapped_unmapped.sam samtools view --no-PG -bo test_query_position.bam test_query_position.sam samtools view --no-PG -bo test_unaligned.bam test_unaligned.sam samtools index MM-chebi.bam samtools index MM-double.bam samtools index MM-explicit.bam samtools index MM-multi.bam samtools index MM-orient.bam samtools index ex10.bam samtools index ex3.bam samtools index ex4.bam samtools index ex5.bam samtools index ex6.bam samtools index ex8.bam samtools index ex9_fail.bam samtools index ex9_nofail.bam samtools index ex_spliced.bam samtools index example_aligned_pairs.bam samtools index example_btag.bam samtools index example_dash_in_chr.bam samtools index example_empty_header.bam samtools index example_empty_with_header.bam samtools index example_reverse_complement.bam samtools index example_unmapped_reads_no_sq.bam samtools index issue100.bam samtools index rg_with_tab.bam samtools index softclip.bam samtools index tag_bug.bam samtools index test_mapped_unmapped.bam samtools index test_query_position.bam samtools index test_unaligned.bam samtools view --no-PG -Co ex1.cram -T ex1.fa ex1.sam samtools view --no-PG -Co ex2.cram -T ex1.fa ex2.sam samtools view --no-PG -Co ex3.cram -T ex1.fa ex3.sam samtools index ex1.cram samtools index ex2.cram samtools index ex3.cram cp ex1.bam example_bai.bam samtools index example_bai.bam mv example_bai.bam.bai example_bai.bai dd if=ex2.bam of=ex2_truncated.bam bs=$((`wc -c < ex2.bam`-512)) count=1 1+0 records in 1+0 records out 122288 bytes (122 kB, 119 KiB) copied, 0.00442401 s, 27.6 MB/s (bgzip -d < ex2.bam; printf '\37\0\0\0\1\0\0\0') | bgzip > ex2_corrupt.bam grep "^@" ex2.sam | samtools view --no-PG -bo empty.bam - samtools index empty.bam cp ex1.bam explicit_index.bam cp ex1.cram explicit_index.cram gzip < faidx_empty_seq.fq > faidx_empty_seq.fq.gz bgzip < ex1.fa > ex1.fa.gz samtools faidx ex1.fa.gz cp ex1.bam ex1_csi.bam samtools index -c ex1_csi.bam touch all.stamp rm with_md.sam make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' bgzip < example_vcf40.vcf > example_vcf40.vcf.gz tabix -f -p vcf example_vcf40.vcf.gz # create tbi index bcftools index -f example_vcf40.vcf.gz # create csi index bgzip < example_vcf42.vcf > example_vcf42.vcf.gz tabix -f -p vcf example_vcf42.vcf.gz # create tbi index bcftools index -f example_vcf42.vcf.gz # create csi index bgzip < example_vcf42_only_header.vcf > example_vcf42_only_header.vcf.gz tabix -f -p vcf example_vcf42_only_header.vcf.gz # create tbi index bcftools index -f example_vcf42_only_header.vcf.gz # create csi index bgzip < example_vcf42_withcontigs.vcf > example_vcf42_withcontigs.vcf.gz tabix -f -p vcf example_vcf42_withcontigs.vcf.gz # create tbi index bcftools index -f example_vcf42_withcontigs.vcf.gz # create csi index bgzip < example_vcf43.vcf > example_vcf43.vcf.gz tabix -f -p vcf example_vcf43.vcf.gz # create tbi index bcftools index -f example_vcf43.vcf.gz # create csi index bgzip < example_vcf43_with_utf8.vcf > example_vcf43_with_utf8.vcf.gz tabix -f -p vcf example_vcf43_with_utf8.vcf.gz # create tbi index bcftools index -f example_vcf43_with_utf8.vcf.gz # create csi index bgzip < gnomad.vcf > gnomad.vcf.gz tabix -f -p vcf gnomad.vcf.gz # create tbi index bcftools index -f gnomad.vcf.gz # create csi index bgzip < gnomad_fixed.vcf > gnomad_fixed.vcf.gz tabix -f -p vcf gnomad_fixed.vcf.gz # create tbi index bcftools index -f gnomad_fixed.vcf.gz # create csi index bgzip < missing_genotypes.vcf > missing_genotypes.vcf.gz tabix -f -p vcf missing_genotypes.vcf.gz # create tbi index bcftools index -f missing_genotypes.vcf.gz # create csi index bcftools view -O b example_vcf40.vcf.gz -o example_vcf40.bcf bcftools index -f example_vcf40.bcf bcftools view -O b example_vcf42.vcf.gz -o example_vcf42.bcf bcftools index -f example_vcf42.bcf bcftools view -O b example_vcf42_only_header.vcf.gz -o example_vcf42_only_header.bcf bcftools index -f example_vcf42_only_header.bcf bcftools view -O b example_vcf42_withcontigs.vcf.gz -o example_vcf42_withcontigs.bcf bcftools index -f example_vcf42_withcontigs.bcf bcftools view -O b example_vcf43.vcf.gz -o example_vcf43.bcf bcftools index -f example_vcf43.bcf bcftools view -O b example_vcf43_with_utf8.vcf.gz -o example_vcf43_with_utf8.bcf bcftools index -f example_vcf43_with_utf8.bcf bcftools view -O b gnomad.vcf.gz -o gnomad.bcf bcftools index -f gnomad.bcf bcftools view -O b gnomad_fixed.vcf.gz -o gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools index -f gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools view -O b missing_genotypes.vcf.gz -o missing_genotypes.bcf bcftools index -f missing_genotypes.bcf touch all.stamp make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' dh_auto_test I: pybuild base:311: cd /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pysam-0.23.0+ds configfile: setup.cfg plugins: typeguard-4.4.2 collecting ... collected 960 items / 1 skipped tests/AlignedSegment_test.py::TestAlignedSegment::testBlocks PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testCompare PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testEmpty PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testFullReferencePositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testHashing PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testLargeRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testNoSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testPositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testSettingTagInEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testStrOfEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateTlen PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_mapped_reads_are_updated PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_unmapped_reads_ignore_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_equivalence_matches_only_and_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_1character_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_bad_type_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_hard_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_lowercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_match_mismatch PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_via_cigarstring PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip_reference PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_soft_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_uppercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_with_malformed_MD_tag PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_header_accessible PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_query_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_read_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_query_length_is_limited PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_equal PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestCigar::testCigar PASSED tests/AlignedSegment_test.py::TestCigar::testCigarString PASSED tests/AlignedSegment_test.py::TestCigarStats::testStats PASSED tests/AlignedSegment_test.py::TestAlignedPairs::testReferenceBases PASSED tests/AlignedSegment_test.py::TestBaseModifications::testChebi PASSED tests/AlignedSegment_test.py::TestBaseModifications::testDouble PASSED tests/AlignedSegment_test.py::TestBaseModifications::testExplicit PASSED tests/AlignedSegment_test.py::TestBaseModifications::testMulti PASSED tests/AlignedSegment_test.py::TestBaseModifications::testOrient PASSED tests/AlignedSegment_test.py::TestTags::testAddTags PASSED tests/AlignedSegment_test.py::TestTags::testAddTagsType PASSED tests/AlignedSegment_test.py::TestTags::testArrayTags PASSED tests/AlignedSegment_test.py::TestTags::testEmptyTag PASSED tests/AlignedSegment_test.py::TestTags::testLongTags PASSED tests/AlignedSegment_test.py::TestTags::testMDTagComplex PASSED tests/AlignedSegment_test.py::TestTags::testMDTagDeletions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagInsertions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagMatchOnly PASSED tests/AlignedSegment_test.py::TestTags::testMDTagRefSkipping PASSED tests/AlignedSegment_test.py::TestTags::testMDTagSoftClipping PASSED tests/AlignedSegment_test.py::TestTags::testMissingTag PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegers PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegersWrittenToFile PASSED tests/AlignedSegment_test.py::TestTags::testSetTag PASSED tests/AlignedSegment_test.py::TestTags::testTagParsing PASSED tests/AlignedSegment_test.py::TestTags::testTagsUpdatingFloat PASSED tests/AlignedSegment_test.py::TestCopy::testCopy PASSED tests/AlignedSegment_test.py::TestCopy::testDeepCopy PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestEnums::test_cigar_enums_are_defined PASSED tests/AlignedSegment_test.py::TestEnums::test_sam_flags_are_defined PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_constructed_without_header PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_written_to_file PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_id_can_be_set PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_name_is_not_available PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_qualities_are_complemented PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_sequence_is_complemented PASSED tests/AlignedSegment_test.py::TestExportImport::test_dict_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_with_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_without_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_to_string_without_alignment_file PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_dict PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_header PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references_without_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_CRAM [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_mu5fzglw' PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_SAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_CRAM [W::sanitise_SQ_lines] Header @SQ length mismatch for ref chr1, 2147483647 vs 1575 [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_9rn8d8nu' PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_SAM PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupQueryPosition::testPileup PASSED tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope SKIPPED tests/AlignmentFilePileup_test.py::TestPileupObjects::testPileupColumn PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testInverse PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateAll PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIteratePerContig PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateRanges PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateTruncate PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testAccessOnClosedIterator PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStart PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStr PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testTruncate PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_depths_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_mapping_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_with_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_without_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_from_pileups_are_equal PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARQueryLength [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigar [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigarstring [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARflag [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmapq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmrnm [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARpos [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqual [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARquery [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARrname [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARseq [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testOpt [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPairedBools [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPresentOptionalFields [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testTags [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testRaises PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testTags PASSED tests/AlignmentFile_test.py::TestIO::testBAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testBAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithCSIIndex PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithShortBAI PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithoutAlignedSegments PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2BAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2CRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2SAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestIO::testEmptyBAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyWithHeaderBAM PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFile PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject PASSED tests/AlignmentFile_test.py::TestIO::testHead PASSED tests/AlignmentFile_test.py::TestIO::testOpenFromFilename PASSED tests/AlignmentFile_test.py::TestIO::testReadBamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadSamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadingFromFileWithoutIndex PASSED tests/AlignmentFile_test.py::TestIO::testSAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2CRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAMWithoutHeader PASSED tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile PASSED tests/AlignmentFile_test.py::TestIO::test_accessing_attributes_in_closed_file_raises_errors PASSED tests/AlignmentFile_test.py::TestIO::test_fail_read_sam_without_header PASSED tests/AlignmentFile_test.py::TestIO::test_fail_when_reading_unformatted_files PASSED tests/AlignmentFile_test.py::TestIO::test_fetch_by_tid PASSED tests/AlignmentFile_test.py::TestIO::test_header_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_with_header_without_header_check PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_without_header_with_refs PASSED tests/AlignmentFile_test.py::TestIO::test_reference_name_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_write_bam_to_unknown_path_fails [E::hts_open_format] Failed to open file "missing_directory/new_file.bam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAutoDetect::testBAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testCRAM [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestAutoDetect::testSAM PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIteratePerContig [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIterateRanges [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIteratePerContig [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIterateRanges [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestFloatTagBug::testFloatTagBug PASSED tests/AlignmentFile_test.py::TestLargeFieldBug::testLargeFileBug PASSED tests/AlignmentFile_test.py::TestClipping::testClipping PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_bam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_sam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads_by_contig PASSED tests/AlignmentFile_test.py::TestContextManager::testManager PASSED tests/AlignmentFile_test.py::TestMultiThread::testSingleThreadEqualsMultithread PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBadContig PASSED tests/AlignmentFile_test.py::TestExceptions::testMeaninglessCrap PASSED tests/AlignmentFile_test.py::TestExceptions::testMissingFile [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testZeroToZero PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenBamAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsBam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenSamAsBam PASSED tests/AlignmentFile_test.py::TestRegionParsing::test_dash_in_chr PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::test_pass_if_reads_binary_equal PASSED tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_in_header PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_with_null_bytes_in_header PASSED tests/AlignmentFile_test.py::TestMismatchingHeader::testMismatchingHeader PASSED tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBam2 PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBamIterator [W::bam_hdr_read] EOF marker is absent. The input is probably truncated [E::bgzf_read_block] Failed to read BGZF block data at offset 105176 expected 17578 bytes; hread returned 17094 [E::bgzf_read] Read block operation failed with error 4 after 0 of 4 bytes PASSED tests/AlignmentFile_test.py::TestCorruptBAM::testCorruptBamIterator PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetch [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchUntilEOF [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionFalseTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueFalse [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetch [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchUntilEOF [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/426e31835a6dfdcbf6c534671edf02f7": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionFalseTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueFalse [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueTrue [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused [W::find_file_url] Failed to open reference "https://www.ebi.ac.uk/ena/cram/md5/b6853ffe730ece50076db834dea18e3b": Connection refused PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetch PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetchAll PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testView PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testBAM PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testSAM PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_counts_as_expected PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_nofilter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_quality_filter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_all PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_callback PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_with_coordinates_works PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_without_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_wrong_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_counting_the_same_region_works PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_all PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_first PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_total PASSED tests/AlignmentFile_test.py::TestLogging::testFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail2 PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testCount PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testIndexStats PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testMate PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct_per_chromosome PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testIndex PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testSort [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testView [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAlignmentFileIndex::testIndex PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexBAM [W::hts_idx_load3] The index file is older than the data file: /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/pysam_data/ex1.bam.bai PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexCRAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testRemoteExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestVerbosity::testVerbosity PASSED tests/AlignmentFile_test.py::TestSanityCheckingBAM::test_empty_read_gives_value_error PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_bam PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_cram SKIPPED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_sam PASSED tests/StreamFiledescriptors_test.py::StreamTest::test_samtools_processing SKIPPED tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCF PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamples::testVCF PASSED tests/VariantFile_test.py::TestMissingSamples::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCF [W::bcf_hdr_check_sanity] PL should be declared as Number=G PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testDetectBCF PASSED tests/VariantFile_test.py::TestOpening::testDetectVCF [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestOpening::testDetectVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCF PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFFromPath PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithoutIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testMissingFile [E::hts_open_format] Failed to open file "missing_file.vcf" : No such file or directory PASSED tests/VariantFile_test.py::TestOpening::testMissingFileVCFGZ [E::hts_open_format] Failed to open file "missing_file.vcf.gz" : No such file or directory PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_prebuilt_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_tbi_index_will_produce_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_tbi_index PASSED tests/VariantFile_test.py::TestHeader::testIterator PASSED tests/VariantFile_test.py::TestHeader::testStr PASSED tests/VariantFile_test.py::TestParsing::testAlleles PASSED tests/VariantFile_test.py::TestParsing::testAllelesVariantTypes PASSED tests/VariantFile_test.py::TestParsing::testAlt PASSED tests/VariantFile_test.py::TestParsing::testChrom PASSED tests/VariantFile_test.py::TestParsing::testChromFromPath PASSED tests/VariantFile_test.py::TestParsing::testFilter PASSED tests/VariantFile_test.py::TestParsing::testFormat PASSED tests/VariantFile_test.py::TestParsing::testId PASSED tests/VariantFile_test.py::TestParsing::testInfo PASSED tests/VariantFile_test.py::TestParsing::testPos PASSED tests/VariantFile_test.py::TestParsing::testQual PASSED tests/VariantFile_test.py::TestParsing::testRef PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleleIndices PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleles PASSED tests/VariantFile_test.py::TestParsing::testSampleFormats PASSED tests/VariantFile_test.py::TestParsing::testStart PASSED tests/VariantFile_test.py::TestParsing::testStop PASSED tests/VariantFile_test.py::TestIndexFilename::testOpen PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestSettingRecordValues::testBase PASSED tests/VariantFile_test.py::TestSettingRecordValues::testGenotype [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) (0, 0) PASSED tests/VariantFile_test.py::TestSettingRecordValues::testSetQual [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestMultiThreading::testNoMultiThreadingWithIgnoreTruncation PASSED tests/VariantFile_test.py::TestMultiThreading::testSingleThreadEqualsMultithreadResult [E::idx_find_and_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_testSingleThreadEqualsMultithreadResult_n_bfcy75.bcf' PASSED tests/VariantFile_test.py::TestSubsetting::testSubsetting PASSED tests/VariantFile_test.py::TestVCFVersions::test_all_records_can_be_fetched [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestUnicode::test_record_with_unicode PASSED tests/VariantRecord_test.py::test_ascii_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_ascii_annotation_with_variable_length_can_be_added PASSED tests/VariantRecord_test.py::test_unicode_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_set_sample_alleles PASSED tests/VariantRecord_test.py::test_repeated_new_record PASSED tests/compile_test.py::test_bam SKIPPED (no pyximport) tests/compile_test.py::test_gtf SKIPPED (no pyximport) tests/faidx_test.py::TestFastaFile::testFetch PASSED tests/faidx_test.py::TestFastaFile::testFetchErrors PASSED tests/faidx_test.py::TestFastaFile::testLength PASSED tests/faidx_test.py::TestFastaFile::testOutOfRangeAccess PASSED tests/faidx_test.py::TestFastaFile::testSequenceLengths PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_and_contig_raises_exception PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_is_equivalent PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastxFileFastq::testCounts PASSED tests/faidx_test.py::TestFastxFileFastq::testManager PASSED tests/faidx_test.py::TestFastxFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastq::testSequence PASSED tests/faidx_test.py::TestFastqFileFastq::testCounts PASSED tests/faidx_test.py::TestFastqFileFastq::testManager PASSED tests/faidx_test.py::TestFastqFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastqFileFastq::testSequence PASSED tests/faidx_test.py::TestFastxFileFasta::testCounts PASSED tests/faidx_test.py::TestFastxFileFasta::testManager PASSED tests/faidx_test.py::TestFastxFileFasta::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFasta::testSequence PASSED tests/faidx_test.py::TestFastxFileFastqStream::testCounts PASSED tests/faidx_test.py::TestFastxFileFastqStream::testManager PASSED tests/faidx_test.py::TestFastxFileFastqStream::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastqStream::testSequence PASSED tests/faidx_test.py::TestFastxFileWithEmptySequence::testIteration PASSED tests/faidx_test.py::TestRemoteFileFTP::testFTPView PASSED tests/faidx_test.py::TestRemoteFileFTP::test_sequence_lengths_are_available PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_can_be_created_from_scratch PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_name_is_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_quality_is_wrong_length PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_name_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_quality_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_sequence_can_be_modified PASSED tests/faidx_test.py::TestFastqProxy::test_fastq_proxy_instantiation_raises_error PASSED tests/linking_test.py::TestLinking::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_tests_pass SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_fail_on_import SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_pass_if_ld_library_path_set SKIPPED tests/samtools_test.py::SamtoolsTest::testStatements PASSED tests/samtools_test.py::SamtoolsTest::testUsage SKIPPED (skipping us...) tests/samtools_test.py::EmptyIndexTest::testEmptyIndex PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraArg PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraFlag PASSED tests/samtools_test.py::TestReturnType::testReturnValueData PASSED tests/samtools_test.py::TestReturnType::testReturnValueString PASSED tests/samtools_test.py::StdoutTest::testDoubleCalling PASSED tests/samtools_test.py::StdoutTest::testSaveStdout PASSED tests/samtools_test.py::StdoutTest::testWithRedirectedStdout PASSED tests/samtools_test.py::StdoutTest::testWithoutRedirectedStdout PASSED tests/samtools_test.py::PysamTest::testStatements PASSED tests/samtools_test.py::PysamTest::testUsage SKIPPED (skipping usage...) tests/tabix_test.py::TestIndexing::test_indexing_to_custom_location_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_explict_columns_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_lineskipping_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_preset_works PASSED tests/tabix_test.py::TestCompression::testCompression PASSED tests/tabix_test.py::TestCompression::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompression::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionSam::testCompression PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionBed::testCompression PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionVCF::testCompression PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestGZFile::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithoutComments::testHeader PASSED tests/tabix_test.py::TestIterationWithoutComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithoutComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithoutComments::testReopening PASSED tests/tabix_test.py::TestIterationWithComments::testAll PASSED tests/tabix_test.py::TestIterationWithComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithComments::testHeader PASSED tests/tabix_test.py::TestIterationWithComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithComments::testReopening PASSED tests/tabix_test.py::TestIterators::testClosedFile PASSED tests/tabix_test.py::TestIterators::testClosedFileIteration PASSED tests/tabix_test.py::TestIterators::testIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testIteration PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooFewFields PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooManyFields PASSED tests/tabix_test.py::TestBed::testRead PASSED tests/tabix_test.py::TestBed::testWrite PASSED tests/tabix_test.py::TestUnicode::testFromTabix PASSED tests/tabix_test.py::TestUnicode::testFromVCF PASSED tests/tabix_test.py::TestVCFFromTabix::testRead PASSED tests/tabix_test.py::TestVCFFromTabix::testWrite PASSED tests/tabix_test.py::TestVCFFromVCF::testConnecting PASSED tests/tabix_test.py::TestVCFFromVCF::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_15::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_15::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_15::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_15::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_24::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_24::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_24::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_24::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_10::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_10::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_10::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_10::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_6::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_6::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_6::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_6::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_8::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_8::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_8::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_8::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_3::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_3::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_3::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_3::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_16::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_16::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_16::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_16::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_22::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_22::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_22::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_22::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_12::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_12::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_12::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_12::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_18::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_18::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_18::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_18::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_23::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_23::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_23::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_23::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_11::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_11::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_11::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_11::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_13::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_13::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_13::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_13::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_9::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_9::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_9::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_9::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_4::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_4::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_4::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_4::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_5::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_5::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_5::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_5::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_20::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_20::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_20::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_20::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_7::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_7::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_7::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_7::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_21::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_21::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_21::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_21::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_2::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_2::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_2::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_2::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile::testParsing [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:439104 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testConnecting [E::bcf_hdr_parse_sample_line] Could not parse the "#CHROM.." line, either the fields are incorrect or spaces are present instead of tabs: #CHROM POS ID REF ALT QUAL FILTER INFO PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testConnecting [E::bcf_hdr_parse] Could not parse the header, sample line not found PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'CallSetAC' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CallSetAC2' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testParsing [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testConnecting [W::bcf_hdr_check_sanity] GL should be declared as Number=G PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'refseq.name' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'refseq.positionType' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testParsing [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testConnecting [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testParsing [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'MMLQ' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17_gl000205_random' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr18' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr19' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr21' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr22' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000214' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000220' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000225' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrX' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestIndexArgument::testFetchAll PASSED tests/tabix_test.py::TestIndexArgument::testLoadIndexWithoutTbiExtension PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v26 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testEmpty PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v26 PASSED tests/tabix_test.py::TestMultipleIterators::testDisjointIterators PASSED tests/tabix_test.py::TestMultipleIterators::testDoubleFetch PASSED tests/tabix_test.py::TestMultipleIterators::testJoinedIterators PASSED tests/tabix_test.py::TestMultipleIterators::testScope PASSED tests/tabix_test.py::TestContextManager::testManager PASSED tests/tabix_test.py::TestMultithreadTabixFile::testMultithreadEqualsSinglethread PASSED tests/tabixproxies_test.py::TestBED::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testCopy PASSED tests/tabixproxies_test.py::TestParser::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestParser::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestParser::testRead PASSED tests/tabixproxies_test.py::TestParser::testUnset PASSED tests/tabixproxies_test.py::TestParser::testWrite PASSED tests/tabixproxies_test.py::TestGTF::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGTF::testCopy PASSED tests/tabixproxies_test.py::TestGTF::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGTF::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGTF::testRead PASSED tests/tabixproxies_test.py::TestGTF::testUnset PASSED tests/tabixproxies_test.py::TestGTF::testWrite PASSED tests/tabixproxies_test.py::TestGTF::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGTF::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGTF::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_fields PASSED tests/tabixproxies_test.py::TestGTF::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_strand_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGFF3::testCopy PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGFF3::testRead PASSED tests/tabixproxies_test.py::TestGFF3::testUnset PASSED tests/tabixproxies_test.py::TestGFF3::testWrite PASSED tests/tabixproxies_test.py::TestGFF3::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGFF3::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_fields PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_strand_to_none_produces_dot PASSED tests/test_samtools_python.py::test_idxstats_parse_split_lines PASSED tests/test_samtools_python.py::test_bedcov_split_lines PASSED tests/test_samtools_python.py::test_idxstats_parse PASSED tests/test_samtools_python.py::test_bedcov PASSED ================= 947 passed, 14 skipped in 341.41s (0:05:41) ================== make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension running install_lib creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/Pileup.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/bcftools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/config.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/samtools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/config.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/README -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.0+ds/.pybuild/cpython3_3.13_pysam/build/pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/bcftools.py to bcftools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/Pileup.py to Pileup.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/config.py to config.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/samtools.py to samtools.cpython-313.pyc running install_egg_info Copying pysam.egg-info to /build/reproducible-path/python-pysam-0.23.0+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam-0.23.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds' cd tests/pysam_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh_install -Xtest.gtf.gz find debian -name log.txt -delete find debian -name LICENSE -delete make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.0+ds' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcbcf.cpython-313-riscv64-linux-gnu.so: DWARF compression not beneficial - old size 1502782 new size 1523303 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-pysam' in '../python3-pysam_0.23.0+ds-1+b1_riscv64.deb'. dpkg-deb: building package 'python3-pysam-dbgsym' in '../python3-pysam-dbgsym_0.23.0+ds-1+b1_riscv64.deb'. dpkg-genbuildinfo --build=any -O../python-pysam_0.23.0+ds-1+b1_riscv64.buildinfo dpkg-genchanges --build=any -O../python-pysam_0.23.0+ds-1+b1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-04-10T04:29:30Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 10 Apr 2025 04:29:36 +0000 | +------------------------------------------------------------------------------+ python-pysam_0.23.0+ds-1+b1_riscv64.changes: -------------------------------------------- Format: 1.8 Date: Thu, 27 Feb 2025 21:23:36 +0000 Source: python-pysam (0.23.0+ds-1) Binary: python3-pysam python3-pysam-dbgsym Binary-Only: yes Architecture: riscv64 Version: 0.23.0+ds-1+b1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: riscv64 Build Daemon (rv-manda-01) Description: python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Changes: python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for riscv64; no source changes. * Rebuild with Python 3.13 only Checksums-Sha1: f65d42e8e2030866066210fe18d130329e4ccea1 8659 python-pysam_0.23.0+ds-1+b1_riscv64.buildinfo 58c4716c23c5bef174de6f415b7b93ab3a27b904 8436636 python3-pysam-dbgsym_0.23.0+ds-1+b1_riscv64.deb 84f5d4bbe2a1606d77fcceb03c0d105d09ccbb89 3668732 python3-pysam_0.23.0+ds-1+b1_riscv64.deb Checksums-Sha256: 9d6435242cf847fe706cc7bb762041ea8a9e89742ce0acde7ed4893f8f0b4df3 8659 python-pysam_0.23.0+ds-1+b1_riscv64.buildinfo cb71c58cbf4e86296f7176cf1eb3f53fb8cabb4a7ce601493e15f1c7ba4d68ea 8436636 python3-pysam-dbgsym_0.23.0+ds-1+b1_riscv64.deb 6f90b8e01de05f135b0e160de7ab71961523ec7deef52a57dd204312b2d52e2b 3668732 python3-pysam_0.23.0+ds-1+b1_riscv64.deb Files: a1132601ff3c47267aea2cb671b6a059 8659 python optional python-pysam_0.23.0+ds-1+b1_riscv64.buildinfo 658d7224d01a230934f389514d260554 8436636 debug optional python3-pysam-dbgsym_0.23.0+ds-1+b1_riscv64.deb fc2195549d8ff694505a46d14a4c46f2 3668732 python optional python3-pysam_0.23.0+ds-1+b1_riscv64.deb +------------------------------------------------------------------------------+ | Buildinfo Thu, 10 Apr 2025 04:29:41 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-pysam (0.23.0+ds-1) Binary: python3-pysam python3-pysam-dbgsym Architecture: riscv64 Version: 0.23.0+ds-1+b1 Binary-Only-Changes: python-pysam (0.23.0+ds-1+b1) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for riscv64; no source changes. * Rebuild with Python 3.13 only . -- riscv64 Build Daemon (rv-manda-01) Thu, 27 Feb 2025 21:23:36 +0000 Checksums-Md5: 658d7224d01a230934f389514d260554 8436636 python3-pysam-dbgsym_0.23.0+ds-1+b1_riscv64.deb fc2195549d8ff694505a46d14a4c46f2 3668732 python3-pysam_0.23.0+ds-1+b1_riscv64.deb Checksums-Sha1: 58c4716c23c5bef174de6f415b7b93ab3a27b904 8436636 python3-pysam-dbgsym_0.23.0+ds-1+b1_riscv64.deb 84f5d4bbe2a1606d77fcceb03c0d105d09ccbb89 3668732 python3-pysam_0.23.0+ds-1+b1_riscv64.deb Checksums-Sha256: cb71c58cbf4e86296f7176cf1eb3f53fb8cabb4a7ce601493e15f1c7ba4d68ea 8436636 python3-pysam-dbgsym_0.23.0+ds-1+b1_riscv64.deb 6f90b8e01de05f135b0e160de7ab71961523ec7deef52a57dd204312b2d52e2b 3668732 python3-pysam_0.23.0+ds-1+b1_riscv64.deb Build-Origin: Debian Build-Architecture: riscv64 Build-Date: Thu, 10 Apr 2025 04:29:25 +0000 Build-Path: /build/reproducible-path/python-pysam-0.23.0+ds Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.17-3), autopoint (= 0.23.1-1), autotools-dev (= 20220109.1), base-files (= 13.6), base-passwd (= 3.6.6), bash (= 5.2.37-1.1), bcftools (= 1.21-1), binutils (= 2.44-2), binutils-common (= 2.44-2), binutils-riscv64-linux-gnu (= 2.44-2), bsdextrautils (= 2.40.4-5), bsdutils (= 1:2.40.4-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-1), coreutils (= 9.5-1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-17), cpp-14-riscv64-linux-gnu (= 14.2.0-17), cpp-riscv64-linux-gnu (= 4:14.2.0-1), cython3 (= 3.0.11+dfsg-2), dash (= 0.5.12-12), debconf (= 1.5.89), debhelper (= 13.24.1), debianutils (= 5.21), dh-autoreconf (= 20), dh-python (= 6.20250108), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-2), dpkg (= 1.22.15), dpkg-dev (= 1.22.15), dwz (= 0.15-1+b3), file (= 1:5.45-3+b1), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-17), g++-14-riscv64-linux-gnu (= 14.2.0-17), g++-riscv64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-17), gcc-14-base (= 14.2.0-17), gcc-14-riscv64-linux-gnu (= 14.2.0-17), gcc-riscv64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.21.3-4), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-17), libatomic1 (= 14.2.0-17), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b1), libbinutils (= 2.44-2), libblkid1 (= 2.40.4-5), libbrotli-dev (= 1.1.0-2+b6), libbrotli1 (= 1.1.0-2+b6), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.40-7), libc-dev-bin (= 2.40-7), libc6 (= 2.40-7), libc6-dev (= 2.40-7), libcap-ng0 (= 0.8.5-4), libcap2 (= 1:2.73-4), libcc1-0 (= 14.2.0-17), libcom-err2 (= 1.47.2-1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-2), libctf0 (= 2.44-2), libcurl3t64-gnutls (= 8.12.1-3), libcurl4-gnutls-dev (= 8.12.1-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.277), libdebhelper-perl (= 13.24.1), libdeflate-dev (= 1.23-1+b1), libdeflate0 (= 1.23-1+b1), libdpkg-perl (= 1.22.15), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.6.4-1), libexpat1-dev (= 2.6.4-1), libffi8 (= 3.4.7-1), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-14-dev (= 14.2.0-17), libgcc-s1 (= 14.2.0-17), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp-dev (= 2:6.3.0+dfsg-3), libgmp10 (= 2:6.3.0+dfsg-3), libgmpxx4ldbl (= 2:6.3.0+dfsg-3), libgnutls-dane0t64 (= 3.8.9-2), libgnutls-openssl27t64 (= 3.8.9-2), libgnutls28-dev (= 3.8.9-2), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-17), libgprofng0 (= 2.44-2), libgssapi-krb5-2 (= 1.21.3-4), libgssrpc4t64 (= 1.21.3-4), libhogweed6t64 (= 3.10.1-1), libhts-dev (= 1.21+ds-1), libhts3t64 (= 1.21+ds-1), libhtscodecs2 (= 1.6.1-2), libicu72 (= 72.1-6), libidn2-0 (= 2.3.7-2+b1), libidn2-dev (= 2.3.7-2+b1), libisl23 (= 0.27-1), libitm1 (= 14.2.0-17), libjansson4 (= 2.14-2+b3), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 8.1.3-5), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libk5crypto3 (= 1.21.3-4), libkadm5clnt-mit12 (= 1.21.3-4), libkadm5srv-mit12 (= 1.21.3-4), libkdb5-10t64 (= 1.21.3-4), libkeyutils1 (= 1.6.3-4), libkrb5-3 (= 1.21.3-4), libkrb5-dev (= 1.21.3-4), libkrb5support0 (= 1.21.3-4), libldap-dev (= 2.6.9+dfsg-1), libldap2 (= 2.6.9+dfsg-1), liblsan0 (= 14.2.0-17), liblzma-dev (= 5.6.3-1+b1), liblzma5 (= 5.6.3-1+b1), libmagic-mgc (= 1:5.45-3+b1), libmagic1t64 (= 1:5.45-3+b1), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.40.4-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.1-1+b2), libncurses6 (= 6.5+20250216-1), libncursesw6 (= 6.5+20250216-1), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1), libnghttp2-dev (= 1.64.0-1), libnghttp3-9 (= 1.6.0-2), libnghttp3-dev (= 1.6.0-2), libngtcp2-16 (= 1.9.1-1), libngtcp2-crypto-gnutls-dev (= 1.9.1-1), libngtcp2-crypto-gnutls8 (= 1.9.1-1), libngtcp2-dev (= 1.9.1-1), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-2), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-all-dev (= 3.13.2-1), libpython3-dev (= 3.13.2-1), libpython3-stdlib (= 3.13.2-1), libpython3.13 (= 3.13.2-1), libpython3.13-dev (= 3.13.2-1), libpython3.13-minimal (= 3.13.2-1), libpython3.13-stdlib (= 3.13.2-1), libreadline8t64 (= 8.2-6), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-8+b1), libsasl2-modules-db (= 2.1.28+dfsg1-8+b1), libselinux1 (= 3.8-4), libsframe1 (= 2.44-2), libsmartcols1 (= 2.40.4-5), libsqlite3-0 (= 3.46.1-1), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.4.1-1), libssl3t64 (= 3.4.1-1), libstdc++-14-dev (= 14.2.0-17), libstdc++6 (= 14.2.0-17), libsystemd0 (= 257.3-1), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtinfo6 (= 6.5+20250216-1), libtool (= 2.5.4-3), libtsan2 (= 14.2.0-17), libubsan1 (= 14.2.0-17), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.3-1), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-1), libuuid1 (= 2.40.4-5), libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1), libzstd-dev (= 1.5.6+dfsg-2), libzstd1 (= 1.5.6+dfsg-2), linux-libc-dev (= 6.12.16-1), m4 (= 1.4.19-5), make (= 4.4.1-1), man-db (= 2.13.0-1), mawk (= 1.3.4.20250131-1), media-types (= 12.0.0), ncurses-base (= 6.5+20250216-1), ncurses-bin (= 6.5+20250216-1), netbase (= 6.4), nettle-dev (= 3.10.1-1), openssl-provider-legacy (= 3.4.1-1), patch (= 2.7.6-7+b2), perl (= 5.40.1-2), perl-base (= 5.40.1-2), perl-modules-5.40 (= 5.40.1-2), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), python3 (= 3.13.2-1), python3-all (= 3.13.2-1), python3-all-dev (= 3.13.2-1), python3-autocommand (= 2.2.2-3), python3-dev (= 3.13.2-1), python3-inflect (= 7.3.1-2), python3-iniconfig (= 1.1.1-2), python3-jaraco.context (= 6.0.0-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.2-1), python3-more-itertools (= 10.6.0-1), python3-packaging (= 24.2-1), python3-pkg-resources (= 75.8.0-1), python3-pluggy (= 1.5.0-1), python3-pytest (= 8.3.4-1), python3-setuptools (= 75.8.0-1), python3-typeguard (= 4.4.2-1), python3-typing-extensions (= 4.12.2-2), python3-zipp (= 3.21.0-1), python3.13 (= 3.13.2-1), python3.13-dev (= 3.13.2-1), python3.13-minimal (= 3.13.2-1), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1+b2), samtools (= 1.21-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.14-3), tabix (= 1.21+ds-1), tar (= 1.35+dfsg-3.1), tzdata (= 2025a-2), util-linux (= 2.40.4-5), xz-utils (= 5.6.3-1+b1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1740691416" +------------------------------------------------------------------------------+ | Package contents Thu, 10 Apr 2025 04:29:41 +0000 | +------------------------------------------------------------------------------+ python3-pysam-dbgsym_0.23.0+ds-1+b1_riscv64.deb ----------------------------------------------- new Debian package, version 2.0. size 8436636 bytes: control archive=1204 bytes. 916 bytes, 12 lines control 1469 bytes, 14 lines md5sums Package: python3-pysam-dbgsym Source: python-pysam (0.23.0+ds-1) Version: 0.23.0+ds-1+b1 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 8976 Depends: python3-pysam (= 0.23.0+ds-1+b1) Section: debug Priority: optional Description: debug symbols for python3-pysam Build-Ids: 3ecc6f76b005787ecbfd22e6d145cb40b1ad36c5 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prerm #!/bin/sh Package: python3-pysam Source: python-pysam (0.23.0+ds-1) Version: 0.23.0+ds-1+b1 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 33816 Depends: libc6 (>= 2.38), libhts3t64 (>= 1.21), zlib1g (>= 1:1.1.4), python3 (<< 3.14), python3 (>= 3.13~), python3:any Section: python Priority: optional Homepage: https://pysam.readthedocs.org/en/latest Description: interface for the SAM/BAM sequence alignment and mapping format (Python 3) Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. . This package installs the module for Python 3. drwxr-xr-x root/root 0 2025-02-27 21:23 ./ drwxr-xr-x root/root 0 2025-02-27 21:23 ./usr/ drwxr-xr-x root/root 0 2025-02-27 21:23 ./usr/lib/ drwxr-xr-x root/root 0 2025-02-27 21:23 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-02-27 21:23 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-02-27 21:23 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/ -rw-r--r-- root/root 1646 2025-02-27 21:23 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2025-02-27 21:23 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/dependency_links.txt -rw-r--r-- root/root 1 2025-02-27 21:23 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/not-zip-safe -rw-r--r-- root/root 6 2025-02-27 21:23 ./usr/lib/python3/dist-packages/pysam-0.23.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2025-02-27 21:23 ./usr/lib/python3/dist-packages/pysam/ -rw-r--r-- root/root 8955 2025-02-05 09:11 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/build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 10 Apr 2025 04:30:06 +0000 | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 404872 Build-Time: 5871 Distribution: unstable Host Architecture: riscv64 Install-Time: 29 Job: /tmp/rebuilderdFDwHj2/inputs/python-pysam_0.23.0+ds-1.dsc Machine Architecture: riscv64 Package: python-pysam Package-Time: 5988 Source-Version: 0.23.0+ds-1 Space: 404872 Status: successful Version: 0.23.0+ds-1+b1 -------------------------------------------------------------------------------- Finished at 2025-04-10T04:29:30Z Build needed 01:39:48, 404872k disk space size differs for python3-pysam_0.23.0+ds-1+b1_riscv64.deb build artifacts stored in /tmp/rebuilderdFDwHj2/out checking python3-pysam-dbgsym_0.23.0+ds-1+b1_riscv64.deb: size... md5... sha256... sha1... all OK checking python3-pysam_0.23.0+ds-1+b1_riscv64.deb: