=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdHxyoMD/inputs/pbseqlib_5.3.5+dfsg-10_riscv64.buildinfo Source: pbseqlib Version: 5.3.5+dfsg-10 rebuilderd-worker node: riscv64-06 +------------------------------------------------------------------------------+ | Downloading sources Sat, 24 May 2025 04:36:44 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [178 kB] Get:2 https://deb.debian.org/debian sid InRelease [208 kB] Get:3 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:4 https://deb.debian.org/debian sid/main Sources [10.9 MB] Fetched 21.9 MB in 16s (1381 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/p/pbseqlib/pbseqlib_5.3.5%2bdfsg-10.dsc' pbseqlib_5.3.5+dfsg-10.dsc 2594 SHA256:c22f96392ae48f02a474e8330be709035c190cb7d72560b2f52b4530fb882dc9 'https://deb.debian.org/debian/pool/main/p/pbseqlib/pbseqlib_5.3.5%2bdfsg.orig.tar.xz' pbseqlib_5.3.5+dfsg.orig.tar.xz 973104 SHA256:81afecd5d7ccb3cd70ed42cd8afa64876fde4c0deee89e1112c7f3b3d6ee8c49 'https://deb.debian.org/debian/pool/main/p/pbseqlib/pbseqlib_5.3.5%2bdfsg-10.debian.tar.xz' pbseqlib_5.3.5+dfsg-10.debian.tar.xz 12128 SHA256:11b8914e4085df9e664c1c4c6f605dc5fe9d2afb287bd3df862a1dea909bb388 81afecd5d7ccb3cd70ed42cd8afa64876fde4c0deee89e1112c7f3b3d6ee8c49 pbseqlib_5.3.5+dfsg.orig.tar.xz 11b8914e4085df9e664c1c4c6f605dc5fe9d2afb287bd3df862a1dea909bb388 pbseqlib_5.3.5+dfsg-10.debian.tar.xz c22f96392ae48f02a474e8330be709035c190cb7d72560b2f52b4530fb882dc9 pbseqlib_5.3.5+dfsg-10.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sat, 24 May 2025 04:37:03 +0000 | +------------------------------------------------------------------------------+ + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdHxyoMD/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdHxyoMD/inputs/pbseqlib_5.3.5+dfsg-10_riscv64.buildinfo Rebuilding pbseqlib=5.3.5+dfsg-10 in /srv/rebuilderd/tmp/rebuilderdHxyoMD/inputs now. /srv/rebuilderd/tmp/rebuilderdHxyoMD/inputs/pbseqlib_5.3.5+dfsg-10_riscv64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/pbseqlib-5.3.5+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie InRelease [178 kB] Get:2 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie InRelease [178 kB] Get:3 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 Packages [9388 kB] Get:4 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie/main riscv64 Packages [9388 kB] Fetched 19.1 MB in 14s (1414 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250517T203043Z/dists/trixie/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20250523T083120Z/dists/trixie/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 procps riscv64 2:4.0.4-8 [880 kB] Fetched 880 kB in 0s (5378 kB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-8_riscv64.deb' to '/srv/rebuilderd/tmp/tmpnup72lcl/procps_4.0.4-8_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (309 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfv8b1c_x/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgdbm6t64 riscv64 1.24-2 [75.9 kB] Fetched 75.9 kB in 0s (958 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_2o665ew/libgdbm6t64_1.24-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libngtcp2-crypto-gnutls-dev riscv64 1.11.0-1 [48.5 kB] Fetched 48.5 kB in 0s (648 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfe0kldvs/libngtcp2-crypto-gnutls-dev_1.11.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpbcopper-dev riscv64 2.3.0+dfsg-2+b2 [3933 kB] Fetched 3933 kB in 5s (802 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpin864e6f/libpbcopper-dev_2.3.0+dfsg-2+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgnutls28-dev riscv64 3.8.9-2 [2614 kB] Fetched 2614 kB in 0s (11.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsw74u3db/libgnutls28-dev_3.8.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-9 [60.9 kB] Fetched 60.9 kB in 0s (875 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppnbidrsq/libsasl2-2_2.1.28+dfsg1-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libngtcp2-16 riscv64 1.11.0-1 [136 kB] Fetched 136 kB in 0s (1366 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1plw18th/libngtcp2-16_1.11.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-minimal riscv64 3.13.3-1 [27.2 kB] Fetched 27.2 kB in 0s (419 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6y0x5if1/python3-minimal_3.13.3-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 base-files riscv64 13.7 [72.9 kB] Fetched 72.9 kB in 0s (1083 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfgmdq5bh/base-files_13.7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (195 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprdrbeyh3/python3-autocommand_2.2.2-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2+b5 [59.0 kB] Fetched 59.0 kB in 0s (868 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8mbdjgi5/librtmp1_2.4+20151223.gitfa8646d.1-2+b5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 liblsan0 riscv64 14.2.0-19 [1078 kB] Fetched 1078 kB in 0s (8066 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmguuz61o/liblsan0_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libcap-ng0 riscv64 0.8.5-4+b1 [17.2 kB] Fetched 17.2 kB in 0s (148 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1nn2vrbf/libcap-ng0_0.8.5-4+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (107 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkhndzzho/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 librtmp-dev riscv64 2.4+20151223.gitfa8646d.1-2+b5 [118 kB] Fetched 118 kB in 0s (1587 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsb6qqprx/librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 g++-14-riscv64-linux-gnu riscv64 14.2.0-19 [15.0 MB] Fetched 15.0 MB in 1s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjnbxbdv9/g++-14-riscv64-linux-gnu_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 gcc-riscv64-linux-gnu riscv64 4:14.2.0-1 [1432 B] Fetched 1432 B in 0s (18.8 kB/s) dpkg-name: info: moved 'gcc-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpg21pv_qz/gcc-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (1457 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxote81k9/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgcc-14-dev riscv64 14.2.0-19 [5190 kB] Fetched 5190 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyaefuy1v/libgcc-14-dev_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 perl-modules-5.40 all 5.40.1-3 [3021 kB] Fetched 3021 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl7t2kp5b/perl-modules-5.40_5.40.1-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libtasn1-6-dev riscv64 4.20.0-2 [149 kB] Fetched 149 kB in 0s (1913 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq2gwn0qn/libtasn1-6-dev_4.20.0-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libdpkg-perl all 1.22.18 [649 kB] Fetched 649 kB in 0s (5867 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpffrx8ird/libdpkg-perl_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 hdf5-helpers riscv64 1.14.5+repack-3 [26.6 kB] Fetched 26.6 kB in 0s (402 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjbt8ctmb/hdf5-helpers_1.14.5+repack-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libjansson4 riscv64 2.14-2+b3 [40.7 kB] Fetched 40.7 kB in 0s (556 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzhmrs3wb/libjansson4_2.14-2+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libbrotli-dev riscv64 1.1.0-2+b7 [798 kB] Fetched 798 kB in 0s (6185 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5v21xoxa/libbrotli-dev_1.1.0-2+b7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpython3-stdlib riscv64 3.13.3-1 [10.2 kB] Fetched 10.2 kB in 0s (147 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmdkb2mcs/libpython3-stdlib_3.13.3-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-9 [20.5 kB] Fetched 20.5 kB in 0s (273 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmrqf_sur/libsasl2-modules-db_2.1.28+dfsg1-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libkadm5clnt-mit12 riscv64 1.21.3-5 [42.2 kB] Fetched 42.2 kB in 0s (527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4q9ql716/libkadm5clnt-mit12_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpcre2-8-0 riscv64 10.45-1 [300 kB] Fetched 300 kB in 0s (3314 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_n8a9ihn/libpcre2-8-0_10.45-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libunbound8 riscv64 1.22.0-1+b1 [605 kB] Fetched 605 kB in 0s (5204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpap81ji3r/libunbound8_1.22.0-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgmpxx4ldbl riscv64 2:6.3.0+dfsg-3 [329 kB] Fetched 329 kB in 0s (3349 kB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpy8yqdhxo/libgmpxx4ldbl_6.3.0+dfsg-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libsqlite3-0 riscv64 3.46.1-4 [906 kB] Fetched 906 kB in 0s (6916 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuso3csf5/libsqlite3-0_3.46.1-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 m4 riscv64 1.4.19-8 [296 kB] Fetched 296 kB in 0s (3185 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpteq5rq1h/m4_1.4.19-8_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 g++-riscv64-linux-gnu riscv64 4:14.2.0-1 [1196 B] Fetched 1196 B in 0s (18.2 kB/s) dpkg-name: info: moved 'g++-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpcxvwsvqb/g++-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-setuptools all 78.1.0-1.2 [738 kB] Fetched 738 kB in 0s (6237 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1hhvgnlh/python3-setuptools_78.1.0-1.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 8276 B in 0s (113 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrm5e1mt/python3-jaraco.context_6.0.1-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgnutls-openssl27t64 riscv64 3.8.9-2 [453 kB] Fetched 453 kB in 0s (5180 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1eqi4fq5/libgnutls-openssl27t64_3.8.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhdf5-hl-cpp-310 riscv64 1.14.5+repack-3 [24.1 kB] Fetched 24.1 kB in 0s (379 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpry5fjat0/libhdf5-hl-cpp-310_1.14.5+repack-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB] Fetched 978 kB in 0s (7218 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpig3m2qrg/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 librhash1 riscv64 1.4.5-1 [145 kB] Fetched 145 kB in 0s (1664 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl6j36cyg/librhash1_1.4.5-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 g++-14 riscv64 14.2.0-19 [22.5 kB] Fetched 22.5 kB in 0s (314 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprit6ixp4/g++-14_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 coreutils riscv64 9.7-2 [3036 kB] Fetched 3036 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6jh4p8_g/coreutils_9.7-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-9 [716 kB] Fetched 716 kB in 0s (6395 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqsdoe5ss/libdb5.3t64_5.3.28+dfsg2-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 gettext-base riscv64 0.23.1-2 [243 kB] Fetched 243 kB in 0s (2843 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppvu0hq0b/gettext-base_0.23.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgcc-s1 riscv64 14.2.0-19 [56.8 kB] Fetched 56.8 kB in 0s (754 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkfrz8h45/libgcc-s1_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libnghttp3-9 riscv64 1.8.0-1 [68.5 kB] Fetched 68.5 kB in 0s (880 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphwnntttc/libnghttp3-9_1.8.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libxml2 riscv64 2.12.7+dfsg+really2.9.14-0.4 [708 kB] Fetched 708 kB in 0s (5861 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqe03lqnv/libxml2_2.12.7+dfsg+really2.9.14-0.4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhdf5-dev riscv64 1.14.5+repack-3 [6491 kB] Fetched 6491 kB in 0s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpii6pj5j4/libhdf5-dev_1.14.5+repack-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libsframe1 riscv64 2.44-3 [79.1 kB] Fetched 79.1 kB in 0s (1200 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf38b7bl1/libsframe1_2.44-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 dpkg-dev all 1.22.18 [1338 kB] Fetched 1338 kB in 0s (9396 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8m10ei32/dpkg-dev_1.22.18_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (5393 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9yitls54/autoconf_2.72-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpsl5t64 riscv64 0.21.2-1.1+b1 [57.3 kB] Fetched 57.3 kB in 0s (895 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwj_4v3gy/libpsl5t64_0.21.2-1.1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 cpp-14 riscv64 14.2.0-19 [1276 B] Fetched 1276 B in 0s (10.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvoxbn628/cpp-14_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 man-db riscv64 2.13.1-1 [1458 kB] Fetched 1458 kB in 0s (9255 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqha5o2ux/man-db_2.13.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libbz2-1.0 riscv64 1.0.8-6 [40.3 kB] Fetched 40.3 kB in 0s (552 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnyjxd9b_/libbz2-1.0_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie/main riscv64 libblkid1 riscv64 2.41-5 [193 kB] Fetched 193 kB in 0s (2534 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe9c9um2a/libblkid1_2.41-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 groff-base riscv64 1.23.0-8 [1163 kB] Fetched 1163 kB in 0s (8264 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1kmzwch0/groff-base_1.23.0-8_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 debhelper all 13.24.2 [919 kB] Fetched 919 kB in 0s (7467 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwrw1q3ck/debhelper_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-more-itertools all 10.7.0-1 [67.4 kB] Fetched 67.4 kB in 0s (905 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0lckm3x_/python3-more-itertools_10.7.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libmpfr6 riscv64 4.2.2-1 [664 kB] Fetched 664 kB in 0s (6258 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa1rmx527/libmpfr6_4.2.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libboost1.83-dev riscv64 1.83.0-4.2 [10.6 MB] Fetched 10.6 MB in 1s (14.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvy01pf9_/libboost1.83-dev_1.83.0-4.2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie/main riscv64 util-linux riscv64 2.41-5 [1230 kB] Fetched 1230 kB in 0s (7849 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpctl0w9zc/util-linux_2.41-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libjpeg-dev riscv64 1:2.1.5-4 [72.2 kB] Fetched 72.2 kB in 0s (945 kB/s) dpkg-name: info: moved 'libjpeg-dev_1%3a2.1.5-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmp3_t2depm/libjpeg-dev_2.1.5-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 gcc-14 riscv64 14.2.0-19 [529 kB] Fetched 529 kB in 0s (2939 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphxwt__uq/gcc-14_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 gettext riscv64 0.23.1-2 [1682 kB] Fetched 1682 kB in 0s (5126 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt9fd3bsg/gettext_0.23.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 pkgconf riscv64 1.8.1-4 [26.1 kB] Fetched 26.1 kB in 0s (193 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_h7j34cp/pkgconf_1.8.1-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 autopoint all 0.23.1-2 [770 kB] Fetched 770 kB in 0s (3392 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3gnb6mxj/autopoint_0.23.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgomp1 riscv64 14.2.0-19 [130 kB] Fetched 130 kB in 0s (838 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm432gx5d/libgomp1_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 findutils riscv64 4.10.0-3 [706 kB] Fetched 706 kB in 0s (3120 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeffwcnyp/findutils_4.10.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libmd0 riscv64 1.1.0-2+b1 [37.6 kB] Fetched 37.6 kB in 0s (504 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuk5bpkra/libmd0_1.1.0-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libssh2-1-dev riscv64 1.11.1-1 [560 kB] Fetched 560 kB in 0s (2743 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzknjql0k/libssh2-1-dev_1.11.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 krb5-multidev riscv64 1.21.3-5 [126 kB] Fetched 126 kB in 0s (900 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6fx827z4/krb5-multidev_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libzstd1 riscv64 1.5.7+dfsg-1 [360 kB] Fetched 360 kB in 0s (2759 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp79h2wiii/libzstd1_1.5.7+dfsg-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3.13-minimal riscv64 3.13.3-2 [2163 kB] Fetched 2163 kB in 0s (6926 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd00kovlx/python3.13-minimal_3.13.3-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 media-types all 13.0.0 [29.3 kB] Fetched 29.3 kB in 0s (240 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpedk8ydlo/media-types_13.0.0_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 sensible-utils all 0.0.25 [25.0 kB] Fetched 25.0 kB in 0s (181 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyp5c48lv/sensible-utils_0.0.25_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libudev1 riscv64 257.5-2 [153 kB] Fetched 153 kB in 0s (805 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplugjfhso/libudev1_257.5-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 cpp riscv64 4:14.2.0-1 [1576 B] Fetched 1576 B in 0s (16.7 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpozon000p/cpp_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 grep riscv64 3.11-4 [430 kB] Fetched 430 kB in 0s (2291 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjgcyveyc/grep_3.11-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libuchardet0 riscv64 0.0.8-1+b2 [68.8 kB] Fetched 68.8 kB in 0s (495 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgaxbfwx6/libuchardet0_0.0.8-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libjpeg62-turbo-dev riscv64 1:2.1.5-4 [420 kB] Fetched 420 kB in 0s (2312 kB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a2.1.5-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpdmxf3y6n/libjpeg62-turbo-dev_2.1.5-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libcap2 riscv64 1:2.75-7 [28.6 kB] Fetched 28.6 kB in 0s (210 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-7_riscv64.deb' to '/srv/rebuilderd/tmp/tmpxzmowmey/libcap2_2.75-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 0s (3061 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpafo1llj6/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 sqv riscv64 1.3.0-2 [639 kB] Fetched 639 kB in 2s (345 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxr4wws5r/sqv_1.3.0-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 g++ riscv64 4:14.2.0-1 [1328 B] Fetched 1328 B in 0s (10.7 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp9vmq9uh6/g++_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libc-bin riscv64 2.41-7 [605 kB] Fetched 605 kB in 0s (3687 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5oy_285/libc-bin_2.41-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libbrotli1 riscv64 1.1.0-2+b7 [358 kB] Fetched 358 kB in 0s (1961 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnsosqlfh/libbrotli1_1.1.0-2+b7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libngtcp2-crypto-gnutls8 riscv64 1.11.0-1 [29.8 kB] Fetched 29.8 kB in 0s (212 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx42tph5p/libngtcp2-crypto-gnutls8_1.11.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libc-dev-bin riscv64 2.41-7 [56.5 kB] Fetched 56.5 kB in 0s (586 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp75dar_nd/libc-dev-bin_2.41-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libtinfo6 riscv64 6.5+20250216-2 [347 kB] Fetched 347 kB in 0s (1926 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjdqhq2b5/libtinfo6_6.5+20250216-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libcrypt-dev riscv64 1:4.4.38-1 [221 kB] Fetched 221 kB in 0s (1722 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp849bmsxx/libcrypt-dev_4.4.38-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgdbm-compat4t64 riscv64 1.24-2 [50.5 kB] Fetched 50.5 kB in 0s (363 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2saztlo9/libgdbm-compat4t64_1.24-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libssl-dev riscv64 3.5.0-1 [5797 kB] Fetched 5797 kB in 1s (9054 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0w_zq_x8/libssl-dev_3.5.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libstdc++-14-dev riscv64 14.2.0-19 [5276 kB] Fetched 5276 kB in 1s (8462 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplpx2lfv2/libstdc++-14-dev_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 bash riscv64 5.2.37-2+b1 [1505 kB] Fetched 1505 kB in 0s (4421 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9uphg58x/bash_5.2.37-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (5227 kB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmpxjfzckzi/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 sysvinit-utils riscv64 3.14-4 [33.7 kB] Fetched 33.7 kB in 0s (240 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpolxehu_u/sysvinit-utils_3.14-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libldap-dev riscv64 2.6.9+dfsg-2 [581 kB] Fetched 581 kB in 0s (2620 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpukknav9n/libldap-dev_2.6.9+dfsg-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie/main riscv64 libsmartcols1 riscv64 2.41-5 [155 kB] Fetched 155 kB in 0s (1019 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgh174qtt/libsmartcols1_2.41-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libtasn1-6 riscv64 4.20.0-2 [50.6 kB] Fetched 50.6 kB in 0s (409 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2jsjw3pg/libtasn1-6_4.20.0-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libbz2-dev riscv64 1.0.8-6 [69.9 kB] Fetched 69.9 kB in 0s (371 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzefdeazv/libbz2-dev_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 readline-common all 8.2-6 [69.4 kB] Fetched 69.4 kB in 0s (475 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl_w8ktu2/readline-common_8.2-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libmpc3 riscv64 1.3.1-1+b3 [56.7 kB] Fetched 56.7 kB in 0s (352 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp267awb1s/libmpc3_1.3.1-1+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libreadline8t64 riscv64 8.2-6 [169 kB] Fetched 169 kB in 0s (1555 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp00m0bnkt/libreadline8t64_8.2-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libngtcp2-dev riscv64 1.11.0-1 [371 kB] Fetched 371 kB in 0s (2130 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgbkankb1/libngtcp2-dev_1.11.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie/main riscv64 bsdutils riscv64 1:2.41-5 [113 kB] Fetched 113 kB in 0s (744 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.41-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpc9vyy1o3/bsdutils_2.41-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libp11-kit-dev riscv64 0.25.5-3 [208 kB] Fetched 208 kB in 0s (1474 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprvpg946g/libp11-kit-dev_0.25.5-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Fetched 85.7 kB in 0s (669 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpb0h402ll/zlib1g_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 bzip2 riscv64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (288 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpelo7fpag/bzip2_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libmagic-mgc riscv64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (2255 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpdax5i76g/libmagic-mgc_5.46-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libperl5.40 riscv64 5.40.1-3 [3926 kB] Fetched 3926 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdy6uwbtn/libperl5.40_5.40.1-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libnghttp2-dev riscv64 1.64.0-1.1 [219 kB] Fetched 219 kB in 0s (1477 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf5u6bszu/libnghttp2-dev_1.64.0-1.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (1500 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmput57ie__/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (86.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp53y2hnb4/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgnutls30t64 riscv64 3.8.9-2 [1445 kB] Fetched 1445 kB in 0s (4664 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq8sdmakj/libgnutls30t64_3.8.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (721 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkeonze0u/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libc6 riscv64 2.41-7 [2466 kB] Fetched 2466 kB in 0s (5956 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpswo7xqxn/libc6_2.41-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libelf1t64 riscv64 0.192-4 [194 kB] Fetched 194 kB in 0s (1275 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpotog7fwy/libelf1t64_0.192-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libubsan1 riscv64 14.2.0-19 [979 kB] Fetched 979 kB in 0s (3726 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4dczbyna/libubsan1_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libselinux1 riscv64 3.8.1-1 [88.1 kB] Fetched 88.1 kB in 0s (588 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphe9wz3b4/libselinux1_3.8.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhts-dev riscv64 1.21+ds-1 [3136 kB] Fetched 3136 kB in 1s (5908 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpga5jqx_2/libhts-dev_1.21+ds-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 rpcsvc-proto riscv64 1.4.3-1+b2 [62.3 kB] Fetched 62.3 kB in 0s (553 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgsytrh7a/rpcsvc-proto_1.4.3-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libstdc++6 riscv64 14.2.0-19 [707 kB] Fetched 707 kB in 0s (3205 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbb_c1799/libstdc++6_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (156 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_k4hw4iy/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Downloading dependency 1 of 272: procps:riscv64=2:4.0.4-8 Downloading dependency 2 of 272: intltool-debian:riscv64=0.35.0+20060710.6 Downloading dependency 3 of 272: libgdbm6t64:riscv64=1.24-2 Downloading dependency 4 of 272: libngtcp2-crypto-gnutls-dev:riscv64=1.11.0-1 Downloading dependency 5 of 272: libpbcopper-dev:riscv64=2.3.0+dfsg-2+b2 Downloading dependency 6 of 272: libgnutls28-dev:riscv64=3.8.9-2 Downloading dependency 7 of 272: libsasl2-2:riscv64=2.1.28+dfsg1-9 Downloading dependency 8 of 272: libngtcp2-16:riscv64=1.11.0-1 Downloading dependency 9 of 272: python3-minimal:riscv64=3.13.3-1 Downloading dependency 10 of 272: base-files:riscv64=13.7 Downloading dependency 11 of 272: python3-autocommand:riscv64=2.2.2-3 Downloading dependency 12 of 272: librtmp1:riscv64=2.4+20151223.gitfa8646d.1-2+b5 Downloading dependency 13 of 272: liblsan0:riscv64=14.2.0-19 Downloading dependency 14 of 272: libcap-ng0:riscv64=0.8.5-4+b1 Downloading dependency 15 of 272: dh-strip-nondeterminism:riscv64=1.14.1-2 Downloading dependency 16 of 272: librtmp-dev:riscv64=2.4+20151223.gitfa8646d.1-2+b5 Downloading dependency 17 of 272: g++-14-riscv64-linux-gnu:riscv64=14.2.0-19 Downloading dependency 18 of 272: gcc-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 19 of 272: debconf:riscv64=1.5.91 Downloading dependency 20 of 272: libgcc-14-dev:riscv64=14.2.0-19 Downloading dependency 21 of 272: perl-modules-5.40:riscv64=5.40.1-3 Downloading dependency 22 of 272: libtasn1-6-dev:riscv64=4.20.0-2 Downloading dependency 23 of 272: libdpkg-perl:riscv64=1.22.18 Downloading dependency 24 of 272: hdf5-helpers:riscv64=1.14.5+repack-3 Downloading dependency 25 of 272: libjansson4:riscv64=2.14-2+b3 Downloading dependency 26 of 272: libbrotli-dev:riscv64=1.1.0-2+b7 Downloading dependency 27 of 272: libpython3-stdlib:riscv64=3.13.3-1 Downloading dependency 28 of 272: libsasl2-modules-db:riscv64=2.1.28+dfsg1-9 Downloading dependency 29 of 272: libkadm5clnt-mit12:riscv64=1.21.3-5 Downloading dependency 30 of 272: libpcre2-8-0:riscv64=10.45-1 Downloading dependency 31 of 272: libunbound8:riscv64=1.22.0-1+b1 Downloading dependency 32 of 272: libgmpxx4ldbl:riscv64=2:6.3.0+dfsg-3 Downloading dependency 33 of 272: libsqlite3-0:riscv64=3.46.1-4 Downloading dependency 34 of 272: m4:riscv64=1.4.19-8 Downloading dependency 35 of 272: g++-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 36 of 272: python3-setuptools:riscv64=78.1.0-1.2 Downloading dependency 37 of 272: python3-jaraco.context:riscv64=6.0.1-1 Downloading dependency 38 of 272: libgnutls-openssl27t64:riscv64=3.8.9-2 Downloading dependency 39 of 272: libhdf5-hl-cpp-310:riscv64=1.14.5+repack-3 Downloading dependency 40 of 272: zlib1g-dev:riscv64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 41 of 272: librhash1:riscv64=1.4.5-1 Downloading dependency 42 of 272: g++-14:riscv64=14.2.0-19 Downloading dependency 43 of 272: coreutils:riscv64=9.7-2 Downloading dependency 44 of 272: libdb5.3t64:riscv64=5.3.28+dfsg2-9 Downloading dependency 45 of 272: gettext-base:riscv64=0.23.1-2 Downloading dependency 46 of 272: libgcc-s1:riscv64=14.2.0-19 Downloading dependency 47 of 272: libnghttp3-9:riscv64=1.8.0-1 Downloading dependency 48 of 272: libxml2:riscv64=2.12.7+dfsg+really2.9.14-0.4 Downloading dependency 49 of 272: libhdf5-dev:riscv64=1.14.5+repack-3 Downloading dependency 50 of 272: libsframe1:riscv64=2.44-3 Downloading dependency 51 of 272: dpkg-dev:riscv64=1.22.18 Downloading dependency 52 of 272: autoconf:riscv64=2.72-3.1 Downloading dependency 53 of 272: libpsl5t64:riscv64=0.21.2-1.1+b1 Downloading dependency 54 of 272: cpp-14:riscv64=14.2.0-19 Downloading dependency 55 of 272: man-db:riscv64=2.13.1-1 Downloading dependency 56 of 272: libbz2-1.0:riscv64=1.0.8-6 Downloading dependency 57 of 272: libblkid1:riscv64=2.41-5 Downloading dependency 58 of 272: groff-base:riscv64=1.23.0-8 Downloading dependency 59 of 272: debhelper:riscv64=13.24.2 Downloading dependency 60 of 272: python3-more-itertools:riscv64=10.7.0-1 Downloading dependency 61 of 272: libmpfr6:riscv64=4.2.2-1 Downloading dependency 62 of 272: libboost1.83-dev:riscv64=1.83.0-4.2 Downloading dependency 63 of 272: util-linux:riscv64=2.41-5 Downloading dependency 64 of 272: libjpeg-dev:riscv64=1:2.1.5-4 Downloading dependency 65 of 272: gcc-14:riscv64=14.2.0-19 Downloading dependency 66 of 272: gettext:riscv64=0.23.1-2 Downloading dependency 67 of 272: pkgconf:riscv64=1.8.1-4 Downloading dependency 68 of 272: autopoint:riscv64=0.23.1-2 Downloading dependency 69 of 272: libgomp1:riscv64=14.2.0-19 Downloading dependency 70 of 272: findutils:riscv64=4.10.0-3 Downloading dependency 71 of 272: libmd0:riscv64=1.1.0-2+b1 Downloading dependency 72 of 272: libssh2-1-dev:riscv64=1.11.1-1 Downloading dependency 73 of 272: krb5-multidev:riscv64=1.21.3-5 Downloading dependency 74 of 272: libzstd1:riscv64=1.5.7+dfsg-1 Downloading dependency 75 of 272: python3.13-minimal:riscv64=3.13.3-2 Downloading dependency 76 of 272: media-types:riscv64=13.0.0 Downloading dependency 77 of 272: sensible-utils:riscv64=0.0.25 Downloading dependency 78 of 272: libudev1:riscv64=257.5-2 Downloading dependency 79 of 272: cpp:riscv64=4:14.2.0-1 Downloading dependency 80 of 272: grep:riscv64=3.11-4 Downloading dependency 81 of 272: libuchardet0:riscv64=0.0.8-1+b2 Downloading dependency 82 of 272: libjpeg62-turbo-dev:riscv64=1:2.1.5-4 Downloading dependency 83 of 272: libcap2:riscv64=1:2.75-7 Downloading dependency 84 of 272: libtool:riscv64=2.5.4-4 Downloading dependency 85 of 272: sqv:riscv64=1.3.0-2 Downloading dependency 86 of 272: g++:riscv64=4:14.2.0-1 Downloading dependency 87 of 272: libc-bin:riscv64=2.41-7 Downloading dependency 88 of 272: libbrotli1:riscv64=1.1.0-2+b7 Downloading dependency 89 of 272: libngtcp2-crypto-gnutls8:riscv64=1.11.0-1 Downloading dependency 90 of 272: libc-dev-bin:riscv64=2.41-7 Downloading dependency 91 of 272: libtinfo6:riscv64=6.5+20250216-2 Downloading dependency 92 of 272: libcrypt-dev:riscv64=1:4.4.38-1 Downloading dependency 93 of 272: libgdbm-compat4t64:riscv64=1.24-2 Downloading dependency 94 of 272: libssl-dev:riscv64=3.5.0-1 Downloading dependency 95 of 272: libstdc++-14-dev:riscv64=14.2.0-19 Downloading dependency 96 of 272: bash:riscv64=5.2.37-2+b1 Downloading dependency 97 of 272: automake:riscv64=1:1.17-4 Downloading dependency 98 of 272: sysvinit-utils:riscv64=3.14-4 Downloading dependency 99 of 272: libldap-dev:riscv64=2.6.9+dfsg-2 Downloading dependency 100 of 272: libsmartcols1:riscv64=2.41-5 Downloading dependency 101 of 272: libtasn1-6:riscv64=4.20.0-2 Downloading dependency 102 of 272: libbz2-dev:riscv64=1.0.8-6 Downloading dependency 103 of 272: readline-common:riscv64=8.2-6 Downloading dependency 104 of 272: libmpc3:riscv64=1.3.1-1+b3 Downloading dependency 105 of 272: libreadline8t64:riscv64=8.2-6 Downloading dependency 106 of 272: libngtcp2-dev:riscv64=1.11.0-1 Downloading dependency 107 of 272: bsdutils:riscv64=1:2.41-5 Downloading dependency 108 of 272: libp11-kit-dev:riscv64=0.25.5-3 Downloading dependency 109 of 272: zlib1g:riscv64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 110 of 272: bzip2:riscv64=1.0.8-6 Downloading dependency 111 of 272: libmagic-mgc:riscv64=1:5.46-5 Downloading dependency 112 of 272: libperl5.40:riscv64=5.40.1-3 Downloading dependency 113 of 272: libnghttp2-dev:riscv64=1.64.0-1.1 Downloading dependency 114 of 272: po-debconf:riscv64=1.0.21+nmu1 Downloading dependency 115 of 272: python3-jaraco.text:riscv64=4.0.0-1 Downloading dependency 116 of 272: libgnutls30t64:riscv64=3.8.9-2 Downloading dependency 117 of 272: libarchive-zip-perl:riscv64=1.68-1 Downloading dependency 118 of 272: libc6:riscv64=2.41-7 Downloading dependency 119 of 272: libelf1t64:riscv64=0.192-4 Downloading dependency 120 of 272: libubsan1:riscv64=14.2.0-19 Downloading dependency 121 of 272: libselinux1:riscv64=3.8.1-1 Downloading dependency 122 of 272: libhts-dev:riscv64=1.21+ds-1 Downloading dependency 123 of 272: rpcsvc-proto:riscv64=1.4.3-1+b2 Downloading dependency 124 of 272: libstdc++6:riscv64=14.2.0-19 Downloading dependency 125 of 272: libfile-stripnondeterminism-perl:riscv64=1.14.1-2 Downloading dependency 126 of 272: nettle-dev:riscv64=3.10.1-1Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 nettle-dev riscv64 3.10.1-1 [1523 kB] Fetched 1523 kB in 0s (4698 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp86y4y0kr/nettle-dev_3.10.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (93.1 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmp01mpd41w/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libcrypt1 riscv64 1:4.4.38-1 [106 kB] Fetched 106 kB in 0s (1489 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpk6zkv3oy/libcrypt1_4.4.38-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libk5crypto3 riscv64 1.21.3-5 [100 kB] Fetched 100 kB in 0s (692 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7mcvtnxt/libk5crypto3_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libkrb5-dev riscv64 1.21.3-5 [16.1 kB] Fetched 16.1 kB in 0s (123 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgauka85v/libkrb5-dev_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie/main riscv64 bsdextrautils riscv64 2.41-5 [98.0 kB] Fetched 98.0 kB in 0s (573 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmj_d75f9/bsdextrautils_2.41-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 cpp-riscv64-linux-gnu riscv64 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (36.6 kB/s) dpkg-name: info: moved 'cpp-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp87etpggl/cpp-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 gcc riscv64 4:14.2.0-1 [5132 B] Fetched 5132 B in 0s (38.4 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp_vqvfur5/gcc_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 ninja-build riscv64 1.12.1-1 [136 kB] Fetched 136 kB in 0s (920 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjd0d6vw8/ninja-build_1.12.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgtest-dev riscv64 1.16.0-1 [630 kB] Fetched 630 kB in 0s (3516 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpos3rsq40/libgtest-dev_1.16.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libarchive13t64 riscv64 3.7.4-3 [366 kB] Fetched 366 kB in 0s (1962 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp43hm4_qt/libarchive13t64_3.7.4-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libattr1 riscv64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (184 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmphqn_kprr/libattr1_2.5.2-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (77.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9j3sayst/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libunistring5 riscv64 1.3-2 [474 kB] Fetched 474 kB in 0s (2390 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4l8r2nj2/libunistring5_1.3-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 binutils-riscv64-linux-gnu riscv64 2.44-3 [856 kB] Fetched 856 kB in 0s (4169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphi8p2z_r/binutils-riscv64-linux-gnu_2.44-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 liblzma5 riscv64 5.8.1-1 [313 kB] Fetched 313 kB in 0s (2297 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi91crgy/liblzma5_5.8.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libnghttp3-dev riscv64 1.8.0-1 [175 kB] Fetched 175 kB in 0s (1120 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpppebngpw/libnghttp3-dev_1.8.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libaudit1 riscv64 1:4.0.2-2+b2 [54.1 kB] Fetched 54.1 kB in 0s (752 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmp736l7u51/libaudit1_4.0.2-2+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libkrb5-3 riscv64 1.21.3-5 [334 kB] Fetched 334 kB in 0s (1723 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6g3igk56/libkrb5-3_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (99.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4ozvuzm6/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 meson all 1.7.0-1 [639 kB] Fetched 639 kB in 0s (3296 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuymz8scc/meson_1.7.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 gcc-14-riscv64-linux-gnu riscv64 14.2.0-19 [27.1 MB] Fetched 27.1 MB in 3s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9m472io8/gcc-14-riscv64-linux-gnu_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 linux-libc-dev all 6.12.27-1 [2571 kB] Fetched 2571 kB in 0s (6499 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd461t1bm/linux-libc-dev_6.12.27-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 tzdata all 2025b-3 [260 kB] Fetched 260 kB in 0s (2445 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjy6s53m5/tzdata_2025b-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libnghttp2-14 riscv64 1.64.0-1.1 [77.8 kB] Fetched 77.8 kB in 0s (954 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps7137qj2/libnghttp2-14_1.64.0-1.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 openssl-provider-legacy riscv64 3.5.0-1 [307 kB] Fetched 307 kB in 0s (2256 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzm54kz6x/openssl-provider-legacy_3.5.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libjsoncpp26 riscv64 1.9.6-3 [78.1 kB] Fetched 78.1 kB in 0s (525 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsi1xba33/libjsoncpp26_1.9.6-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libdeflate-dev riscv64 1.23-2 [80.1 kB] Fetched 80.1 kB in 0s (571 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7qjtynds/libdeflate-dev_1.23-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpipeline1 riscv64 1.5.8-1 [40.3 kB] Fetched 40.3 kB in 0s (313 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpknuhrhv3/libpipeline1_1.5.8-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libdebhelper-perl all 13.24.2 [90.9 kB] Fetched 90.9 kB in 0s (898 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt5jbqzv1/libdebhelper-perl_13.24.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie/main riscv64 libuuid1 riscv64 2.41-5 [39.8 kB] Fetched 39.8 kB in 0s (248 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkm1if66j/libuuid1_2.41-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 diffutils riscv64 1:3.10-4 [387 kB] Fetched 387 kB in 0s (2461 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpg6rusyg4/diffutils_3.10-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libmagic1t64 riscv64 1:5.46-5 [117 kB] Fetched 117 kB in 0s (747 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpluolmj02/libmagic1t64_5.46-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 patch riscv64 2.8-1 [134 kB] Fetched 134 kB in 0s (1155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpihjcwqyu/patch_2.8-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-zipp all 3.21.0-1 [10.6 kB] Fetched 10.6 kB in 0s (79.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq2jt41t2/python3-zipp_3.21.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libproc2-0 riscv64 2:4.0.4-8 [65.7 kB] Fetched 65.7 kB in 0s (418 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-8_riscv64.deb' to '/srv/rebuilderd/tmp/tmp7_o7yewr/libproc2-0_4.0.4-8_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (1513 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi4z5_rj5/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpbcopper2.3.0 riscv64 2.3.0+dfsg-2+b2 [720 kB] Fetched 720 kB in 4s (163 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwphjh12w/libpbcopper2.3.0_2.3.0+dfsg-2+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 build-essential riscv64 12.12 [4628 B] Fetched 4628 B in 0s (62.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmneu797t/build-essential_12.12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgssrpc4t64 riscv64 1.21.3-5 [60.7 kB] Fetched 60.7 kB in 0s (476 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuftk6wwh/libgssrpc4t64_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 hostname riscv64 3.25 [10.7 kB] Fetched 10.7 kB in 0s (79.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1_2gpyfu/hostname_3.25_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-inflect all 7.3.1-2 [32.4 kB] Fetched 32.4 kB in 0s (216 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb2ryo0ej/python3-inflect_7.3.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 cmake riscv64 3.31.6-2 [11.2 MB] Fetched 11.2 MB in 1s (9711 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmf2njsvs/cmake_3.31.6-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libaec0 riscv64 1.1.3-1+b1 [24.0 kB] Fetched 24.0 kB in 0s (230 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6f7jy7ge/libaec0_1.1.3-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhdf5-cpp-310 riscv64 1.14.5+repack-3 [129 kB] Fetched 129 kB in 0s (928 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8ux4n_k/libhdf5-cpp-310_1.14.5+repack-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libisl23 riscv64 0.27-1 [664 kB] Fetched 664 kB in 0s (3070 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfw571c20/libisl23_0.27-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 file riscv64 1:5.46-5 [43.4 kB] Fetched 43.4 kB in 0s (326 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmp24onkskc/file_5.46-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-pkg-resources all 78.1.0-1.2 [224 kB] Fetched 224 kB in 0s (1362 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5l1b0j4/python3-pkg-resources_78.1.0-1.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (152 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpabnlk0tt/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libboost-dev riscv64 1.83.0.2+b2 [3832 B] Fetched 3832 B in 0s (30.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8356fmlm/libboost-dev_1.83.0.2+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpam-modules-bin riscv64 1.7.0-3 [49.0 kB] Fetched 49.0 kB in 0s (340 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpymg9ta_9/libpam-modules-bin_1.7.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 dwz riscv64 0.15-1+b3 [114 kB] Fetched 114 kB in 0s (696 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2znjdjor/dwz_0.15-1+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-3 [558 kB] Fetched 558 kB in 0s (3331 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpllqn6zqj/libgmp10_6.3.0+dfsg-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libkeyutils1 riscv64 1.6.3-6 [9480 B] Fetched 9480 B in 0s (82.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsbjcw3nk/libkeyutils1_1.6.3-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libssh2-1t64 riscv64 1.11.1-1 [249 kB] Fetched 249 kB in 0s (1157 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3vnejyx/libssh2-1t64_1.11.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 gcc-14-base riscv64 14.2.0-19 [49.4 kB] Fetched 49.4 kB in 0s (352 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnri75j42/gcc-14-base_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libitm1 riscv64 14.2.0-19 [25.8 kB] Fetched 25.8 kB in 0s (221 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzd9pvmg1/libitm1_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libncursesw6 riscv64 6.5+20250216-2 [141 kB] Fetched 141 kB in 0s (931 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjfv_1_j1/libncursesw6_6.5+20250216-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 cmake-data all 3.31.6-2 [2268 kB] Fetched 2268 kB in 0s (8723 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg9it1iyz/cmake-data_3.31.6-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 debianutils riscv64 5.22 [91.6 kB] Fetched 91.6 kB in 0s (634 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q6p0r4h/debianutils_5.22_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-typeguard all 4.4.2-1 [37.3 kB] Fetched 37.3 kB in 0s (266 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv47bew4u/python3-typeguard_4.4.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 xz-utils riscv64 5.8.1-1 [659 kB] Fetched 659 kB in 0s (3589 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa3w_lu8p/xz-utils_5.8.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgprofng0 riscv64 2.44-3 [718 kB] Fetched 718 kB in 0s (3205 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd225l01x/libgprofng0_2.44-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libssl3t64 riscv64 3.5.0-1 [2217 kB] Fetched 2217 kB in 0s (5275 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc0jj1zu0/libssl3t64_3.5.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Fetched 90.5 kB in 0s (752 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6rf19mkt/python3-typing-extensions_4.13.2-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libcurl3t64-gnutls riscv64 8.13.0-5 [380 kB] Fetched 380 kB in 0s (3081 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxtxz0ndd/libcurl3t64-gnutls_8.13.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libsz2 riscv64 1.1.3-1+b1 [7864 B] Fetched 7864 B in 0s (61.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ed04tj7/libsz2_1.1.3-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpam-runtime all 1.7.0-3 [248 kB] Fetched 248 kB in 0s (1537 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptkdzgb11/libpam-runtime_1.7.0-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 make riscv64 4.4.1-2 [463 kB] Fetched 463 kB in 0s (2407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpygbfhpa0/make_4.4.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 mawk riscv64 1.3.4.20250131-1 [142 kB] Fetched 142 kB in 0s (981 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9xe18z6_/mawk_1.3.4.20250131-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libzstd-dev riscv64 1.5.7+dfsg-1 [1392 kB] Fetched 1392 kB in 0s (5521 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd2zpfcjh/libzstd-dev_1.5.7+dfsg-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpbbam2.4.0 riscv64 2.4.0+dfsg-1+b4 [797 kB] Fetched 797 kB in 4s (204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5kaxl7j/libpbbam2.4.0_2.4.0+dfsg-1+b4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 perl riscv64 5.40.1-3 [267 kB] Fetched 267 kB in 0s (1883 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_k44gsko/perl_5.40.1-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libkdb5-10t64 riscv64 1.21.3-5 [43.4 kB] Fetched 43.4 kB in 0s (321 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt9tuywx4/libkdb5-10t64_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libidn2-dev riscv64 2.3.8-2 [135 kB] Fetched 135 kB in 0s (937 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcr10y0f1/libidn2-dev_2.3.8-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3 riscv64 3.13.3-1 [28.2 kB] Fetched 28.2 kB in 0s (199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwxh7sx2u/python3_3.13.3-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhdf5-310 riscv64 1.14.5+repack-3 [1392 kB] Fetched 1392 kB in 0s (4632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwet2g5wv/libhdf5-310_1.14.5+repack-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 ncurses-bin riscv64 6.5+20250216-2 [436 kB] Fetched 436 kB in 0s (2420 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5gfkctc9/ncurses-bin_6.5+20250216-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 binutils-common riscv64 2.44-3 [2509 kB] Fetched 2509 kB in 0s (5446 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbn1m_6g4/binutils-common_2.44-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libcurl4-gnutls-dev riscv64 8.13.0-5 [1104 kB] Fetched 1104 kB in 0s (4949 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfhg0mrgv/libcurl4-gnutls-dev_8.13.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libcom-err2 riscv64 1.47.2-1+b1 [24.0 kB] Fetched 24.0 kB in 0s (176 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf17p76_3/libcom-err2_1.47.2-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libexpat1 riscv64 2.7.1-1 [101 kB] Fetched 101 kB in 0s (679 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi08v7jzk/libexpat1_2.7.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libasan8 riscv64 14.2.0-19 [2365 kB] Fetched 2365 kB in 0s (9178 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07ergdz5/libasan8_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhdf5-hl-310 riscv64 1.14.5+repack-3 [71.1 kB] Fetched 71.1 kB in 0s (522 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2yqztn2/libhdf5-hl-310_1.14.5+repack-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhdf5-hl-fortran-310 riscv64 1.14.5+repack-3 [43.9 kB] Fetched 43.9 kB in 0s (327 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnmu6ge6i/libhdf5-hl-fortran-310_1.14.5+repack-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpam0g riscv64 1.7.0-3 [70.0 kB] Fetched 70.0 kB in 0s (499 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp22i_i483/libpam0g_1.7.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 python3.13 riscv64 3.13.3-2 [751 kB] Fetched 751 kB in 0s (3909 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5xdaf0os/python3.13_3.13.3-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libacl1 riscv64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (269 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8d_3woyh/libacl1_2.3.2-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 gzip riscv64 1.13-1 [139 kB] Fetched 139 kB in 0s (1271 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9evbz83h/gzip_1.13-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libctf0 riscv64 2.44-3 [96.1 kB] Fetched 96.1 kB in 0s (525 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvd0gi0yo/libctf0_2.44-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libdeflate0 riscv64 1.23-2 [38.8 kB] Fetched 38.8 kB in 0s (269 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptseqsojr/libdeflate0_1.23-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 dpkg riscv64 1.22.18 [1549 kB] Fetched 1549 kB in 0s (4399 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj56cig3_/dpkg_1.22.18_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 binutils riscv64 2.44-3 [267 kB] Fetched 267 kB in 0s (2728 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu_9f93wj/binutils_2.44-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie/main riscv64 libmount1 riscv64 2.41-5 [226 kB] Fetched 226 kB in 0s (1612 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo51an02b/libmount1_2.41-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpsl-dev riscv64 0.21.2-1.1+b1 [87.2 kB] Fetched 87.2 kB in 0s (588 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpja5cy4sa/libpsl-dev_0.21.2-1.1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 base-passwd riscv64 3.6.7 [53.8 kB] Fetched 53.8 kB in 0s (397 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp49zgfcim/base-passwd_3.6.7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 init-system-helpers all 1.68 [38.7 kB] Fetched 38.7 kB in 0s (270 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyctp56pm/init-system-helpers_1.68_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libffi8 riscv64 3.4.8-2 [21.7 kB] Fetched 21.7 kB in 0s (146 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpysko9a39/libffi8_3.4.8-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libc6-dev riscv64 2.41-7 [3125 kB] Fetched 3125 kB in 1s (5498 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpemsoa8ea/libc6-dev_2.41-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgfortran5 riscv64 14.2.0-19 [398 kB] Fetched 398 kB in 0s (2206 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8rooydwl/libgfortran5_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250523T083120Z trixie/main riscv64 liblastlog2-2 riscv64 2.41-5 [28.4 kB] Fetched 28.4 kB in 0s (272 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpouxuq1wy/liblastlog2-2_2.41-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libldap2 riscv64 2.6.9+dfsg-2 [196 kB] Fetched 196 kB in 0s (1349 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpous107ap/libldap2_2.6.9+dfsg-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpkgconf3 riscv64 1.8.1-4 [36.0 kB] Fetched 36.0 kB in 0s (272 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwlh1vim0/libpkgconf3_1.8.1-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libkrb5support0 riscv64 1.21.3-5 [34.0 kB] Fetched 34.0 kB in 0s (247 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp0ocpy30/libkrb5support0_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgnutls-dane0t64 riscv64 3.8.9-2 [453 kB] Fetched 453 kB in 0s (3086 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn3h9_n0t/libgnutls-dane0t64_3.8.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libdebconfclient0 riscv64 0.278 [10.3 kB] Fetched 10.3 kB in 0s (76.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkrdpnsqz/libdebconfclient0_0.278_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhdf5-fortran-310 riscv64 1.14.5+repack-3 [116 kB] Fetched 116 kB in 0s (786 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ag_f03q/libhdf5-fortran-310_1.14.5+repack-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpam-modules riscv64 1.7.0-3 [175 kB] Fetched 175 kB in 0s (1140 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ttepi4p/libpam-modules_1.7.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgssapi-krb5-2 riscv64 1.21.3-5 [143 kB] Fetched 143 kB in 0s (913 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6foxtp45/libgssapi-krb5-2_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 pkgconf-bin riscv64 1.8.1-4 [29.8 kB] Fetched 29.8 kB in 0s (222 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoh2qrwf2/pkgconf-bin_1.8.1-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libtsan2 riscv64 14.2.0-19 [2241 kB] Fetched 2241 kB in 0s (5930 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy1gbmfjt/libtsan2_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 apt riscv64 3.0.1 [1379 kB] Fetched 1379 kB in 2s (705 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpijafqeiu/apt_3.0.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 d-shlibs all 0.109 [11.1 kB] Fetched 11.1 kB in 0s (78.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp3vdq9k8/d-shlibs_0.109_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpython3.13-stdlib riscv64 3.13.3-2 [1918 kB] Fetched 1918 kB in 0s (5966 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3weengfd/libpython3.13-stdlib_3.13.3-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libapt-pkg7.0 riscv64 3.0.1 [1064 kB] Fetched 1064 kB in 0s (4564 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpukov4s02/libapt-pkg7.0_3.0.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 dash riscv64 0.5.12-12 [101 kB] Fetched 101 kB in 0s (683 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppt1te_qa/dash_0.5.12-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libp11-kit0 riscv64 0.25.5-3 [444 kB] Fetched 444 kB in 0s (2790 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0epbf8oz/libp11-kit0_0.25.5-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhts3t64 riscv64 1.21+ds-1 [470 kB] Fetched 470 kB in 0s (2373 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc2vleaur/libhts3t64_1.21+ds-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 sed riscv64 4.9-2 [329 kB] Fetched 329 kB in 0s (2277 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp46aw10t_/sed_4.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 tar riscv64 1.35+dfsg-3.1 [822 kB] Fetched 822 kB in 0s (3262 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0jygq24o/tar_1.35+dfsg-3.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 cpp-14-riscv64-linux-gnu riscv64 14.2.0-19 [14.0 MB] Fetched 14.0 MB in 1s (9757 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzztcbdgu/cpp-14-riscv64-linux-gnu_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhogweed6t64 riscv64 3.10.1-1 [336 kB] Fetched 336 kB in 0s (2622 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppvzxcwl3/libhogweed6t64_3.10.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 liblzma-dev riscv64 5.8.1-1 [476 kB] Fetched 476 kB in 0s (3870 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpylkac3jl/liblzma-dev_5.8.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libnettle8t64 riscv64 3.10.1-1 [335 kB] Fetched 335 kB in 0s (1841 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo8folps6/libnettle8t64_3.10.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpbbam-dev riscv64 2.4.0+dfsg-1+b4 [88.4 kB] Fetched 88.4 kB in 2s (41.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4pjjv6vm/libpbbam-dev_2.4.0+dfsg-1+b4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 perl-base riscv64 5.40.1-3 [1662 kB] Fetched 1662 kB in 0s (3600 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaaihxuyf/perl-base_5.40.1-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libuv1t64 riscv64 1.50.0-2 [154 kB] Fetched 154 kB in 0s (980 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkejqf2rm/libuv1t64_1.50.0-2_riscv64.deb' Downloading dependency 127 of 272: libaudit-common:riscv64=1:4.0.2-2 Downloading dependency 128 of 272: libcrypt1:riscv64=1:4.4.38-1 Downloading dependency 129 of 272: libk5crypto3:riscv64=1.21.3-5 Downloading dependency 130 of 272: libkrb5-dev:riscv64=1.21.3-5 Downloading dependency 131 of 272: bsdextrautils:riscv64=2.41-5 Downloading dependency 132 of 272: cpp-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 133 of 272: gcc:riscv64=4:14.2.0-1 Downloading dependency 134 of 272: ninja-build:riscv64=1.12.1-1 Downloading dependency 135 of 272: libgtest-dev:riscv64=1.16.0-1 Downloading dependency 136 of 272: libarchive13t64:riscv64=3.7.4-3 Downloading dependency 137 of 272: libattr1:riscv64=1:2.5.2-3 Downloading dependency 138 of 272: netbase:riscv64=6.5 Downloading dependency 139 of 272: libunistring5:riscv64=1.3-2 Downloading dependency 140 of 272: binutils-riscv64-linux-gnu:riscv64=2.44-3 Downloading dependency 141 of 272: liblzma5:riscv64=5.8.1-1 Downloading dependency 142 of 272: libnghttp3-dev:riscv64=1.8.0-1 Downloading dependency 143 of 272: libaudit1:riscv64=1:4.0.2-2+b2 Downloading dependency 144 of 272: libkrb5-3:riscv64=1.21.3-5 Downloading dependency 145 of 272: python3-jaraco.functools:riscv64=4.1.0-1 Downloading dependency 146 of 272: meson:riscv64=1.7.0-1 Downloading dependency 147 of 272: gcc-14-riscv64-linux-gnu:riscv64=14.2.0-19 Downloading dependency 148 of 272: linux-libc-dev:riscv64=6.12.27-1 Downloading dependency 149 of 272: tzdata:riscv64=2025b-3 Downloading dependency 150 of 272: libnghttp2-14:riscv64=1.64.0-1.1 Downloading dependency 151 of 272: openssl-provider-legacy:riscv64=3.5.0-1 Downloading dependency 152 of 272: libjsoncpp26:riscv64=1.9.6-3 Downloading dependency 153 of 272: libdeflate-dev:riscv64=1.23-2 Downloading dependency 154 of 272: libpipeline1:riscv64=1.5.8-1 Downloading dependency 155 of 272: libdebhelper-perl:riscv64=13.24.2 Downloading dependency 156 of 272: libuuid1:riscv64=2.41-5 Downloading dependency 157 of 272: diffutils:riscv64=1:3.10-4 Downloading dependency 158 of 272: libmagic1t64:riscv64=1:5.46-5 Downloading dependency 159 of 272: patch:riscv64=2.8-1 Downloading dependency 160 of 272: python3-zipp:riscv64=3.21.0-1 Downloading dependency 161 of 272: libproc2-0:riscv64=2:4.0.4-8 Downloading dependency 162 of 272: ncurses-base:riscv64=6.5+20250216-2 Downloading dependency 163 of 272: libpbcopper2.3.0:riscv64=2.3.0+dfsg-2+b2 Downloading dependency 164 of 272: build-essential:riscv64=12.12 Downloading dependency 165 of 272: libgssrpc4t64:riscv64=1.21.3-5 Downloading dependency 166 of 272: hostname:riscv64=3.25 Downloading dependency 167 of 272: python3-inflect:riscv64=7.3.1-2 Downloading dependency 168 of 272: cmake:riscv64=3.31.6-2 Downloading dependency 169 of 272: libaec0:riscv64=1.1.3-1+b1 Downloading dependency 170 of 272: libhdf5-cpp-310:riscv64=1.14.5+repack-3 Downloading dependency 171 of 272: libisl23:riscv64=0.27-1 Downloading dependency 172 of 272: file:riscv64=1:5.46-5 Downloading dependency 173 of 272: python3-pkg-resources:riscv64=78.1.0-1.2 Downloading dependency 174 of 272: dh-autoreconf:riscv64=20 Downloading dependency 175 of 272: libboost-dev:riscv64=1.83.0.2+b2 Downloading dependency 176 of 272: libpam-modules-bin:riscv64=1.7.0-3 Downloading dependency 177 of 272: dwz:riscv64=0.15-1+b3 Downloading dependency 178 of 272: libgmp10:riscv64=2:6.3.0+dfsg-3 Downloading dependency 179 of 272: libkeyutils1:riscv64=1.6.3-6 Downloading dependency 180 of 272: libssh2-1t64:riscv64=1.11.1-1 Downloading dependency 181 of 272: gcc-14-base:riscv64=14.2.0-19 Downloading dependency 182 of 272: libitm1:riscv64=14.2.0-19 Downloading dependency 183 of 272: libncursesw6:riscv64=6.5+20250216-2 Downloading dependency 184 of 272: cmake-data:riscv64=3.31.6-2 Downloading dependency 185 of 272: debianutils:riscv64=5.22 Downloading dependency 186 of 272: python3-typeguard:riscv64=4.4.2-1 Downloading dependency 187 of 272: xz-utils:riscv64=5.8.1-1 Downloading dependency 188 of 272: libgprofng0:riscv64=2.44-3 Downloading dependency 189 of 272: libssl3t64:riscv64=3.5.0-1 Downloading dependency 190 of 272: python3-typing-extensions:riscv64=4.13.2-1 Downloading dependency 191 of 272: libcurl3t64-gnutls:riscv64=8.13.0-5 Downloading dependency 192 of 272: libsz2:riscv64=1.1.3-1+b1 Downloading dependency 193 of 272: libpam-runtime:riscv64=1.7.0-3 Downloading dependency 194 of 272: make:riscv64=4.4.1-2 Downloading dependency 195 of 272: mawk:riscv64=1.3.4.20250131-1 Downloading dependency 196 of 272: libzstd-dev:riscv64=1.5.7+dfsg-1 Downloading dependency 197 of 272: libpbbam2.4.0:riscv64=2.4.0+dfsg-1+b4 Downloading dependency 198 of 272: perl:riscv64=5.40.1-3 Downloading dependency 199 of 272: libkdb5-10t64:riscv64=1.21.3-5 Downloading dependency 200 of 272: libidn2-dev:riscv64=2.3.8-2 Downloading dependency 201 of 272: python3:riscv64=3.13.3-1 Downloading dependency 202 of 272: libhdf5-310:riscv64=1.14.5+repack-3 Downloading dependency 203 of 272: ncurses-bin:riscv64=6.5+20250216-2 Downloading dependency 204 of 272: binutils-common:riscv64=2.44-3 Downloading dependency 205 of 272: libcurl4-gnutls-dev:riscv64=8.13.0-5 Downloading dependency 206 of 272: libcom-err2:riscv64=1.47.2-1+b1 Downloading dependency 207 of 272: libexpat1:riscv64=2.7.1-1 Downloading dependency 208 of 272: libasan8:riscv64=14.2.0-19 Downloading dependency 209 of 272: libhdf5-hl-310:riscv64=1.14.5+repack-3 Downloading dependency 210 of 272: libhdf5-hl-fortran-310:riscv64=1.14.5+repack-3 Downloading dependency 211 of 272: libpam0g:riscv64=1.7.0-3 Downloading dependency 212 of 272: python3.13:riscv64=3.13.3-2 Downloading dependency 213 of 272: libacl1:riscv64=2.3.2-2+b1 Downloading dependency 214 of 272: gzip:riscv64=1.13-1 Downloading dependency 215 of 272: libctf0:riscv64=2.44-3 Downloading dependency 216 of 272: libdeflate0:riscv64=1.23-2 Downloading dependency 217 of 272: dpkg:riscv64=1.22.18 Downloading dependency 218 of 272: binutils:riscv64=2.44-3 Downloading dependency 219 of 272: libmount1:riscv64=2.41-5 Downloading dependency 220 of 272: libpsl-dev:riscv64=0.21.2-1.1+b1 Downloading dependency 221 of 272: base-passwd:riscv64=3.6.7 Downloading dependency 222 of 272: init-system-helpers:riscv64=1.68 Downloading dependency 223 of 272: libffi8:riscv64=3.4.8-2 Downloading dependency 224 of 272: libc6-dev:riscv64=2.41-7 Downloading dependency 225 of 272: libgfortran5:riscv64=14.2.0-19 Downloading dependency 226 of 272: liblastlog2-2:riscv64=2.41-5 Downloading dependency 227 of 272: libldap2:riscv64=2.6.9+dfsg-2 Downloading dependency 228 of 272: libpkgconf3:riscv64=1.8.1-4 Downloading dependency 229 of 272: libkrb5support0:riscv64=1.21.3-5 Downloading dependency 230 of 272: libgnutls-dane0t64:riscv64=3.8.9-2 Downloading dependency 231 of 272: libdebconfclient0:riscv64=0.278 Downloading dependency 232 of 272: libhdf5-fortran-310:riscv64=1.14.5+repack-3 Downloading dependency 233 of 272: libpam-modules:riscv64=1.7.0-3 Downloading dependency 234 of 272: libgssapi-krb5-2:riscv64=1.21.3-5 Downloading dependency 235 of 272: pkgconf-bin:riscv64=1.8.1-4 Downloading dependency 236 of 272: libtsan2:riscv64=14.2.0-19 Downloading dependency 237 of 272: apt:riscv64=3.0.1 Downloading dependency 238 of 272: d-shlibs:riscv64=0.109 Downloading dependency 239 of 272: libpython3.13-stdlib:riscv64=3.13.3-2 Downloading dependency 240 of 272: libapt-pkg7.0:riscv64=3.0.1 Downloading dependency 241 of 272: dash:riscv64=0.5.12-12 Downloading dependency 242 of 272: libp11-kit0:riscv64=0.25.5-3 Downloading dependency 243 of 272: libhts3t64:riscv64=1.21+ds-1 Downloading dependency 244 of 272: sed:riscv64=4.9-2 Downloading dependency 245 of 272: tar:riscv64=1.35+dfsg-3.1 Downloading dependency 246 of 272: cpp-14-riscv64-linux-gnu:riscv64=14.2.0-19 Downloading dependency 247 of 272: libhogweed6t64:riscv64=3.10.1-1 Downloading dependency 248 of 272: liblzma-dev:riscv64=5.8.1-1 Downloading dependency 249 of 272: libnettle8t64:riscv64=3.10.1-1 Downloading dependency 250 of 272: libpbbam-dev:riscv64=2.4.0+dfsg-1+b4 Downloading dependency 251 of 272: perl-base:riscv64=5.40.1-3 Downloading dependency 252 of 272: libuv1t64:riscv64=1.50.0-2 Downloading dependency 253 of 272: debian-archive-keyring:riscv64=2025.1Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 debian-archive-keyring all 2025.1 [179 kB] Fetched 179 kB in 1s (167 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_z0qcvys/debian-archive-keyring_2025.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 comerr-dev riscv64 2.1-1.47.2-1+b1 [59.4 kB] Fetched 59.4 kB in 0s (541 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ep930bs/comerr-dev_2.1-1.47.2-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libjpeg62-turbo riscv64 1:2.1.5-4 [155 kB] Fetched 155 kB in 0s (908 kB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a2.1.5-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpg4_2f9kj/libjpeg62-turbo_2.1.5-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libaec-dev riscv64 1.1.3-1+b1 [41.9 kB] Fetched 41.9 kB in 0s (302 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8w8n32rx/libaec-dev_1.1.3-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libbinutils riscv64 2.44-3 [520 kB] Fetched 520 kB in 0s (2341 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprdv1qode/libbinutils_2.44-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libcurl4t64 riscv64 8.13.0-5 [386 kB] Fetched 386 kB in 0s (2194 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph229yrrv/libcurl4t64_8.13.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libkadm5srv-mit12 riscv64 1.21.3-5 [54.9 kB] Fetched 54.9 kB in 0s (360 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp41u8dfg1/libkadm5srv-mit12_1.21.3-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 liblz4-1 riscv64 1.10.0-4 [85.8 kB] Fetched 85.8 kB in 0s (781 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiuq4yg3r/liblz4-1_1.10.0-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libpython3.13-minimal riscv64 3.13.3-2 [857 kB] Fetched 857 kB in 0s (3238 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnabv9z41/libpython3.13-minimal_3.13.3-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libgmp-dev riscv64 2:6.3.0+dfsg-3 [1024 kB] Fetched 1024 kB in 0s (3505 kB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpsjf5dbn7/libgmp-dev_6.3.0+dfsg-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libevent-2.1-7t64 riscv64 2.1.12-stable-10+b1 [182 kB] Fetched 182 kB in 0s (1044 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsd48c39s/libevent-2.1-7t64_2.1.12-stable-10+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libhtscodecs2 riscv64 1.6.1-2 [74.7 kB] Fetched 74.7 kB in 0s (527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw0hzqv47/libhtscodecs2_1.6.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libsystemd0 riscv64 257.5-2 [470 kB] Fetched 470 kB in 0s (2605 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgkps2bss/libsystemd0_257.5-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libxxhash0 riscv64 0.8.3-2 [40.1 kB] Fetched 40.1 kB in 0s (260 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpagqqjkgp/libxxhash0_0.8.3-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 googletest all 1.16.0-1 [517 kB] Fetched 517 kB in 0s (2581 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpugu_gb75/googletest_1.16.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libatomic1 riscv64 14.2.0-19 [8672 B] Fetched 8672 B in 0s (52.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgnamov8a/libatomic1_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libcc1-0 riscv64 14.2.0-19 [40.1 kB] Fetched 40.1 kB in 0s (516 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpky48v97r/libcc1-0_14.2.0-19_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (414 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz4tbrh3p/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libidn2-0 riscv64 2.3.8-2 [109 kB] Fetched 109 kB in 0s (632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpne2agbzn/libidn2-0_2.3.8-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250517T203043Z trixie/main riscv64 libctf-nobfd0 riscv64 2.44-3 [163 kB] Fetched 163 kB in 0s (941 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpehvjd8ie/libctf-nobfd0_2.44-3_riscv64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_riscv64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_riscv64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp_2n_yt8l/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture riscv64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.Hy52EFltPB as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.Hy52EFltPB 127.0.0.1 - - [24/May/2025 12:56:31] code 404, message File not found 127.0.0.1 - - [24/May/2025 12:56:31] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:34529 ./ InRelease 127.0.0.1 - - [24/May/2025 12:56:31] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:34529 ./ Release [462 B] 127.0.0.1 - - [24/May/2025 12:56:31] code 404, message File not found 127.0.0.1 - - [24/May/2025 12:56:31] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:34529 ./ Release.gpg 127.0.0.1 - - [24/May/2025 12:56:31] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:34529 ./ Packages [342 kB] Fetched 342 kB in 0s (909 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [24/May/2025 12:56:33] "GET /./gcc-14-base_14.2.0-19_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:33] "GET /./libc6_2.41-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:33] "GET /./libgcc-s1_14.2.0-19_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:33] "GET /./mawk_1.3.4.20250131-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:33] "GET /./base-files_13.7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:33] "GET /./libtinfo6_6.5%2b20250216-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:33] "GET /./debianutils_5.22_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:33] "GET /./bash_5.2.37-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:34] "GET /./libcap2_2.75-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:34] "GET /./libsystemd0_257.5-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:34] "GET /./bsdutils_2.41-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - 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127.0.0.1 - - [24/May/2025 12:56:38] "GET /./init-system-helpers_1.68_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:38] "GET /./libc-bin_2.41-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:38] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:56:38] "GET /./sysvinit-utils_3.14-4_riscv64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.Hy52EFltPB 127.0.0.1 - - [24/May/2025 12:56:57] code 404, message File not found 127.0.0.1 - - [24/May/2025 12:56:57] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:34529 ./ InRelease 127.0.0.1 - - [24/May/2025 12:56:57] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:34529 ./ Release 127.0.0.1 - - [24/May/2025 12:56:57] code 404, message File not found 127.0.0.1 - - [24/May/2025 12:56:57] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:34529 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.Hy52EFltPB usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [24/May/2025 12:58:00] "GET /./libpython3.13-minimal_3.13.3-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:00] "GET /./libexpat1_2.7.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:00] "GET /./python3.13-minimal_3.13.3-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:00] "GET /./python3-minimal_3.13.3-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:00] "GET /./media-types_13.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:00] "GET /./netbase_6.5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:00] "GET /./tzdata_2025b-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:00] "GET /./libffi8_3.4.8-2_riscv64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [24/May/2025 12:58:32] "GET /./libssl-dev_3.5.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:33] "GET /./libssh2-1-dev_1.11.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:33] "GET /./libzstd-dev_1.5.7%2bdfsg-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:33] "GET /./libcurl4-gnutls-dev_8.13.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:33] "GET /./libhdf5-dev_1.14.5%2brepack-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:35] "GET /./libboost1.83-dev_1.83.0-4.2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:36] "GET /./libbz2-dev_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:36] "GET /./libdeflate0_1.23-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:36] "GET /./libhtscodecs2_1.6.1-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:36] "GET /./libhts3t64_1.21%2bds-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:37] "GET /./libdeflate-dev_1.23-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:37] "GET /./liblzma-dev_5.8.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:37] "GET /./libhts-dev_1.21%2bds-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:37] "GET /./ninja-build_1.12.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:37] "GET /./googletest_1.16.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:38] "GET /./libgtest-dev_1.16.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:38] "GET /./meson_1.7.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:38] "GET /./libboost-dev_1.83.0.2%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:38] "GET /./libpbbam2.4.0_2.4.0%2bdfsg-1%2bb4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:38] "GET /./libpbbam-dev_2.4.0%2bdfsg-1%2bb4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [24/May/2025 12:58:38] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp_2n_yt8l/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.Hy52EFltPB Reading package lists... Building dependency tree... Reading state information... procps is already the newest version (2:4.0.4-8). procps set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. libngtcp2-crypto-gnutls-dev is already the newest version (1.11.0-1). libngtcp2-crypto-gnutls-dev set to manually installed. libpbcopper-dev is already the newest version (2.3.0+dfsg-2+b2). libpbcopper-dev set to manually installed. libgnutls28-dev is already the newest version (3.8.9-2). libgnutls28-dev set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-9). libsasl2-2 set to manually installed. libngtcp2-16 is already the newest version (1.11.0-1). libngtcp2-16 set to manually installed. python3-minimal is already the newest version (3.13.3-1). python3-minimal set to manually installed. base-files is already the newest version (13.7). python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp1 set to manually installed. liblsan0 is already the newest version (14.2.0-19). liblsan0 set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-2+b5). librtmp-dev set to manually installed. g++-14-riscv64-linux-gnu is already the newest version (14.2.0-19). g++-14-riscv64-linux-gnu set to manually installed. gcc-riscv64-linux-gnu is already the newest version (4:14.2.0-1). gcc-riscv64-linux-gnu set to manually installed. debconf is already the newest version (1.5.91). libgcc-14-dev is already the newest version (14.2.0-19). libgcc-14-dev set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-3). perl-modules-5.40 set to manually installed. libtasn1-6-dev is already the newest version (4.20.0-2). libtasn1-6-dev set to manually installed. libdpkg-perl is already the newest version (1.22.18). libdpkg-perl set to manually installed. hdf5-helpers is already the newest version (1.14.5+repack-3). hdf5-helpers set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libbrotli-dev is already the newest version (1.1.0-2+b7). libbrotli-dev set to manually installed. libpython3-stdlib is already the newest version (3.13.3-1). libpython3-stdlib set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-9). libsasl2-modules-db set to manually installed. libkadm5clnt-mit12 is already the newest version (1.21.3-5). libkadm5clnt-mit12 set to manually installed. libpcre2-8-0 is already the newest version (10.45-1). libunbound8 is already the newest version (1.22.0-1+b1). libunbound8 set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-3). libgmpxx4ldbl set to manually installed. libsqlite3-0 is already the newest version (3.46.1-4). m4 is already the newest version (1.4.19-8). m4 set to manually installed. g++-riscv64-linux-gnu is already the newest version (4:14.2.0-1). g++-riscv64-linux-gnu set to manually installed. python3-setuptools is already the newest version (78.1.0-1.2). python3-setuptools set to manually installed. python3-jaraco.context is already the newest version (6.0.1-1). python3-jaraco.context set to manually installed. libgnutls-openssl27t64 is already the newest version (3.8.9-2). libgnutls-openssl27t64 set to manually installed. libhdf5-hl-cpp-310 is already the newest version (1.14.5+repack-3). libhdf5-hl-cpp-310 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. librhash1 is already the newest version (1.4.5-1). librhash1 set to manually installed. g++-14 is already the newest version (14.2.0-19). g++-14 set to manually installed. coreutils is already the newest version (9.7-2). libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). gettext-base is already the newest version (0.23.1-2). gettext-base set to manually installed. libgcc-s1 is already the newest version (14.2.0-19). libnghttp3-9 is already the newest version (1.8.0-1). libnghttp3-9 set to manually installed. libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.4). libxml2 set to manually installed. libhdf5-dev is already the newest version (1.14.5+repack-3). libhdf5-dev set to manually installed. libsframe1 is already the newest version (2.44-3). libsframe1 set to manually installed. dpkg-dev is already the newest version (1.22.18). dpkg-dev set to manually installed. autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. cpp-14 is already the newest version (14.2.0-19). cpp-14 set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). libblkid1 is already the newest version (2.41-5). groff-base is already the newest version (1.23.0-8). groff-base set to manually installed. debhelper is already the newest version (13.24.2). debhelper set to manually installed. python3-more-itertools is already the newest version (10.7.0-1). python3-more-itertools set to manually installed. libmpfr6 is already the newest version (4.2.2-1). libmpfr6 set to manually installed. libboost1.83-dev is already the newest version (1.83.0-4.2). libboost1.83-dev set to manually installed. util-linux is already the newest version (2.41-5). libjpeg-dev is already the newest version (1:2.1.5-4). libjpeg-dev set to manually installed. gcc-14 is already the newest version (14.2.0-19). gcc-14 set to manually installed. gettext is already the newest version (0.23.1-2). gettext set to manually installed. pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. autopoint is already the newest version (0.23.1-2). autopoint set to manually installed. libgomp1 is already the newest version (14.2.0-19). libgomp1 set to manually installed. findutils is already the newest version (4.10.0-3). libmd0 is already the newest version (1.1.0-2+b1). libssh2-1-dev is already the newest version (1.11.1-1). libssh2-1-dev set to manually installed. krb5-multidev is already the newest version (1.21.3-5). krb5-multidev set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-1). python3.13-minimal is already the newest version (3.13.3-2). python3.13-minimal set to manually installed. media-types is already the newest version (13.0.0). media-types set to manually installed. sensible-utils is already the newest version (0.0.25). sensible-utils set to manually installed. libudev1 is already the newest version (257.5-2). cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. grep is already the newest version (3.11-4). libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. libjpeg62-turbo-dev is already the newest version (1:2.1.5-4). libjpeg62-turbo-dev set to manually installed. libcap2 is already the newest version (1:2.75-7). libtool is already the newest version (2.5.4-4). libtool set to manually installed. sqv is already the newest version (1.3.0-2). sqv set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. libc-bin is already the newest version (2.41-7). libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.11.0-1). libngtcp2-crypto-gnutls8 set to manually installed. libc-dev-bin is already the newest version (2.41-7). libc-dev-bin set to manually installed. libtinfo6 is already the newest version (6.5+20250216-2). libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. libssl-dev is already the newest version (3.5.0-1). libssl-dev set to manually installed. libstdc++-14-dev is already the newest version (14.2.0-19). libstdc++-14-dev set to manually installed. bash is already the newest version (5.2.37-2+b1). automake is already the newest version (1:1.17-4). automake set to manually installed. sysvinit-utils is already the newest version (3.14-4). libldap-dev is already the newest version (2.6.9+dfsg-2). libldap-dev set to manually installed. libsmartcols1 is already the newest version (2.41-5). libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. libbz2-dev is already the newest version (1.0.8-6). libbz2-dev set to manually installed. readline-common is already the newest version (8.2-6). readline-common set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. libreadline8t64 is already the newest version (8.2-6). libreadline8t64 set to manually installed. libngtcp2-dev is already the newest version (1.11.0-1). libngtcp2-dev set to manually installed. bsdutils is already the newest version (1:2.41-5). libp11-kit-dev is already the newest version (0.25.5-3). libp11-kit-dev set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. libperl5.40 is already the newest version (5.40.1-3). libperl5.40 set to manually installed. libnghttp2-dev is already the newest version (1.64.0-1.1). libnghttp2-dev set to manually installed. po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libgnutls30t64 is already the newest version (3.8.9-2). libgnutls30t64 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libc6 is already the newest version (2.41-7). libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. libubsan1 is already the newest version (14.2.0-19). libubsan1 set to manually installed. libselinux1 is already the newest version (3.8.1-1). libhts-dev is already the newest version (1.21+ds-1). libhts-dev set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b2). rpcsvc-proto set to manually installed. libstdc++6 is already the newest version (14.2.0-19). libstdc++6 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. nettle-dev is already the newest version (3.10.1-1). nettle-dev set to manually installed. libaudit-common is already the newest version (1:4.0.2-2). libcrypt1 is already the newest version (1:4.4.38-1). libk5crypto3 is already the newest version (1.21.3-5). libk5crypto3 set to manually installed. libkrb5-dev is already the newest version (1.21.3-5). libkrb5-dev set to manually installed. bsdextrautils is already the newest version (2.41-5). bsdextrautils set to manually installed. cpp-riscv64-linux-gnu is already the newest version (4:14.2.0-1). cpp-riscv64-linux-gnu set to manually installed. gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. ninja-build is already the newest version (1.12.1-1). ninja-build set to manually installed. libgtest-dev is already the newest version (1.16.0-1). libgtest-dev set to manually installed. libarchive13t64 is already the newest version (3.7.4-3). libarchive13t64 set to manually installed. libattr1 is already the newest version (1:2.5.2-3). netbase is already the newest version (6.5). netbase set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. binutils-riscv64-linux-gnu is already the newest version (2.44-3). binutils-riscv64-linux-gnu set to manually installed. liblzma5 is already the newest version (5.8.1-1). libnghttp3-dev is already the newest version (1.8.0-1). libnghttp3-dev set to manually installed. libaudit1 is already the newest version (1:4.0.2-2+b2). libkrb5-3 is already the newest version (1.21.3-5). libkrb5-3 set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. meson is already the newest version (1.7.0-1). meson set to manually installed. gcc-14-riscv64-linux-gnu is already the newest version (14.2.0-19). gcc-14-riscv64-linux-gnu set to manually installed. linux-libc-dev is already the newest version (6.12.27-1). linux-libc-dev set to manually installed. tzdata is already the newest version (2025b-3). tzdata set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1.1). libnghttp2-14 set to manually installed. openssl-provider-legacy is already the newest version (3.5.0-1). libjsoncpp26 is already the newest version (1.9.6-3). libjsoncpp26 set to manually installed. libdeflate-dev is already the newest version (1.23-2). libdeflate-dev set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libdebhelper-perl is already the newest version (13.24.2). libdebhelper-perl set to manually installed. libuuid1 is already the newest version (2.41-5). diffutils is already the newest version (1:3.10-4). libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. patch is already the newest version (2.8-1). patch set to manually installed. python3-zipp is already the newest version (3.21.0-1). python3-zipp set to manually installed. libproc2-0 is already the newest version (2:4.0.4-8). libproc2-0 set to manually installed. ncurses-base is already the newest version (6.5+20250216-2). libpbcopper2.3.0 is already the newest version (2.3.0+dfsg-2+b2). libpbcopper2.3.0 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libgssrpc4t64 is already the newest version (1.21.3-5). libgssrpc4t64 set to manually installed. hostname is already the newest version (3.25). python3-inflect is already the newest version (7.3.1-2). python3-inflect set to manually installed. cmake is already the newest version (3.31.6-2). cmake set to manually installed. libaec0 is already the newest version (1.1.3-1+b1). libaec0 set to manually installed. libhdf5-cpp-310 is already the newest version (1.14.5+repack-3). libhdf5-cpp-310 set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. python3-pkg-resources is already the newest version (78.1.0-1.2). python3-pkg-resources set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libboost-dev is already the newest version (1.83.0.2+b2). libboost-dev set to manually installed. libpam-modules-bin is already the newest version (1.7.0-3). dwz is already the newest version (0.15-1+b3). dwz set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-3). libkeyutils1 is already the newest version (1.6.3-6). libkeyutils1 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. gcc-14-base is already the newest version (14.2.0-19). libitm1 is already the newest version (14.2.0-19). libitm1 set to manually installed. libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. cmake-data is already the newest version (3.31.6-2). cmake-data set to manually installed. debianutils is already the newest version (5.22). python3-typeguard is already the newest version (4.4.2-1). python3-typeguard set to manually installed. xz-utils is already the newest version (5.8.1-1). xz-utils set to manually installed. libgprofng0 is already the newest version (2.44-3). libgprofng0 set to manually installed. libssl3t64 is already the newest version (3.5.0-1). python3-typing-extensions is already the newest version (4.13.2-1). python3-typing-extensions set to manually installed. libcurl3t64-gnutls is already the newest version (8.13.0-5). libcurl3t64-gnutls set to manually installed. libsz2 is already the newest version (1.1.3-1+b1). libsz2 set to manually installed. libpam-runtime is already the newest version (1.7.0-3). make is already the newest version (4.4.1-2). make set to manually installed. mawk is already the newest version (1.3.4.20250131-1). libzstd-dev is already the newest version (1.5.7+dfsg-1). libzstd-dev set to manually installed. libpbbam2.4.0 is already the newest version (2.4.0+dfsg-1+b4). libpbbam2.4.0 set to manually installed. perl is already the newest version (5.40.1-3). perl set to manually installed. libkdb5-10t64 is already the newest version (1.21.3-5). libkdb5-10t64 set to manually installed. libidn2-dev is already the newest version (2.3.8-2). libidn2-dev set to manually installed. python3 is already the newest version (3.13.3-1). python3 set to manually installed. libhdf5-310 is already the newest version (1.14.5+repack-3). libhdf5-310 set to manually installed. ncurses-bin is already the newest version (6.5+20250216-2). binutils-common is already the newest version (2.44-3). binutils-common set to manually installed. libcurl4-gnutls-dev is already the newest version (8.13.0-5). libcurl4-gnutls-dev set to manually installed. libcom-err2 is already the newest version (1.47.2-1+b1). libcom-err2 set to manually installed. libexpat1 is already the newest version (2.7.1-1). libexpat1 set to manually installed. libasan8 is already the newest version (14.2.0-19). libasan8 set to manually installed. libhdf5-hl-310 is already the newest version (1.14.5+repack-3). libhdf5-hl-310 set to manually installed. libhdf5-hl-fortran-310 is already the newest version (1.14.5+repack-3). libhdf5-hl-fortran-310 set to manually installed. libpam0g is already the newest version (1.7.0-3). python3.13 is already the newest version (3.13.3-2). python3.13 set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). gzip is already the newest version (1.13-1). libctf0 is already the newest version (2.44-3). libctf0 set to manually installed. libdeflate0 is already the newest version (1.23-2). libdeflate0 set to manually installed. dpkg is already the newest version (1.22.18). binutils is already the newest version (2.44-3). binutils set to manually installed. libmount1 is already the newest version (2.41-5). libpsl-dev is already the newest version (0.21.2-1.1+b1). libpsl-dev set to manually installed. base-passwd is already the newest version (3.6.7). init-system-helpers is already the newest version (1.68). libffi8 is already the newest version (3.4.8-2). libffi8 set to manually installed. libc6-dev is already the newest version (2.41-7). libc6-dev set to manually installed. libgfortran5 is already the newest version (14.2.0-19). libgfortran5 set to manually installed. liblastlog2-2 is already the newest version (2.41-5). libldap2 is already the newest version (2.6.9+dfsg-2). libldap2 set to manually installed. libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. libkrb5support0 is already the newest version (1.21.3-5). libkrb5support0 set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.9-2). libgnutls-dane0t64 set to manually installed. libdebconfclient0 is already the newest version (0.278). libhdf5-fortran-310 is already the newest version (1.14.5+repack-3). libhdf5-fortran-310 set to manually installed. libpam-modules is already the newest version (1.7.0-3). libgssapi-krb5-2 is already the newest version (1.21.3-5). libgssapi-krb5-2 set to manually installed. pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. libtsan2 is already the newest version (14.2.0-19). libtsan2 set to manually installed. apt is already the newest version (3.0.1). apt set to manually installed. d-shlibs is already the newest version (0.109). d-shlibs set to manually installed. libpython3.13-stdlib is already the newest version (3.13.3-2). libpython3.13-stdlib set to manually installed. libapt-pkg7.0 is already the newest version (3.0.1). libapt-pkg7.0 set to manually installed. dash is already the newest version (0.5.12-12). libp11-kit0 is already the newest version (0.25.5-3). libp11-kit0 set to manually installed. libhts3t64 is already the newest version (1.21+ds-1). libhts3t64 set to manually installed. sed is already the newest version (4.9-2). tar is already the newest version (1.35+dfsg-3.1). cpp-14-riscv64-linux-gnu is already the newest version (14.2.0-19). cpp-14-riscv64-linux-gnu set to manually installed. libhogweed6t64 is already the newest version (3.10.1-1). libhogweed6t64 set to manually installed. liblzma-dev is already the newest version (5.8.1-1). liblzma-dev set to manually installed. libnettle8t64 is already the newest version (3.10.1-1). libnettle8t64 set to manually installed. libpbbam-dev is already the newest version (2.4.0+dfsg-1+b4). libpbbam-dev set to manually installed. perl-base is already the newest version (5.40.1-3). libuv1t64 is already the newest version (1.50.0-2). libuv1t64 set to manually installed. debian-archive-keyring is already the newest version (2025.1). debian-archive-keyring set to manually installed. comerr-dev is already the newest version (2.1-1.47.2-1+b1). comerr-dev set to manually installed. libjpeg62-turbo is already the newest version (1:2.1.5-4). libjpeg62-turbo set to manually installed. libaec-dev is already the newest version (1.1.3-1+b1). libaec-dev set to manually installed. libbinutils is already the newest version (2.44-3). libbinutils set to manually installed. libcurl4t64 is already the newest version (8.13.0-5). libcurl4t64 set to manually installed. libkadm5srv-mit12 is already the newest version (1.21.3-5). libkadm5srv-mit12 set to manually installed. liblz4-1 is already the newest version (1.10.0-4). liblz4-1 set to manually installed. libpython3.13-minimal is already the newest version (3.13.3-2). libpython3.13-minimal set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-3). libgmp-dev set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-2.1-7t64 set to manually installed. libhtscodecs2 is already the newest version (1.6.1-2). libhtscodecs2 set to manually installed. libsystemd0 is already the newest version (257.5-2). libxxhash0 is already the newest version (0.8.3-2). libxxhash0 set to manually installed. googletest is already the newest version (1.16.0-1). googletest set to manually installed. libatomic1 is already the newest version (14.2.0-19). libatomic1 set to manually installed. libcc1-0 is already the newest version (14.2.0-19). libcc1-0 set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. libidn2-0 is already the newest version (2.3.8-2). libidn2-0 set to manually installed. libctf-nobfd0 is already the newest version (2.44-3). libctf-nobfd0 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.Hy52EFltPB (Reading database ... 39808 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Hy52EFltPB I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.Hy52EFltPB I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.Hy52EFltPB... I: success in 649.9051 seconds Downloading dependency 254 of 272: comerr-dev:riscv64=2.1-1.47.2-1+b1 Downloading dependency 255 of 272: libjpeg62-turbo:riscv64=1:2.1.5-4 Downloading dependency 256 of 272: libaec-dev:riscv64=1.1.3-1+b1 Downloading dependency 257 of 272: libbinutils:riscv64=2.44-3 Downloading dependency 258 of 272: libcurl4t64:riscv64=8.13.0-5 Downloading dependency 259 of 272: libkadm5srv-mit12:riscv64=1.21.3-5 Downloading dependency 260 of 272: liblz4-1:riscv64=1.10.0-4 Downloading dependency 261 of 272: libpython3.13-minimal:riscv64=3.13.3-2 Downloading dependency 262 of 272: libgmp-dev:riscv64=2:6.3.0+dfsg-3 Downloading dependency 263 of 272: libevent-2.1-7t64:riscv64=2.1.12-stable-10+b1 Downloading dependency 264 of 272: libhtscodecs2:riscv64=1.6.1-2 Downloading dependency 265 of 272: libsystemd0:riscv64=257.5-2 Downloading dependency 266 of 272: libxxhash0:riscv64=0.8.3-2 Downloading dependency 267 of 272: googletest:riscv64=1.16.0-1 Downloading dependency 268 of 272: libatomic1:riscv64=14.2.0-19 Downloading dependency 269 of 272: libcc1-0:riscv64=14.2.0-19 Downloading dependency 270 of 272: autotools-dev:riscv64=20240727.1 Downloading dependency 271 of 272: libidn2-0:riscv64=2.3.8-2 Downloading dependency 272 of 272: libctf-nobfd0:riscv64=2.44-3 env --chdir=/srv/rebuilderd/tmp/rebuilderdHxyoMD/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1747073956 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildHryTtp/debrebuild.sbuildrc.tarHD2uHCe7Y sbuild --build=riscv64 --host=riscv64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildHryTtp/debrebuild.tar.uJWQdnMNxt3v --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=pbseqlib-5.3.5+dfsg /srv/rebuilderd/tmp/rebuilderdHxyoMD/inputs/pbseqlib_5.3.5+dfsg-10.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.2 (02 May 2025) on localhost +==============================================================================+ | pbseqlib 5.3.5+dfsg-10 (riscv64) Sat, 24 May 2025 05:07:23 +0000 | +==============================================================================+ Package: pbseqlib Version: 5.3.5+dfsg-10 Source Version: 5.3.5+dfsg-10 Distribution: unstable Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildHryTtp/debrebuild.tar.uJWQdnMNxt3v to /srv/rebuilderd/tmp/tmp.sbuild.3sQZuCms5L... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sat, 24 May 2025 05:09:52 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdHxyoMD/inputs/pbseqlib_5.3.5+dfsg-10.dsc exists in /srv/rebuilderd/tmp/rebuilderdHxyoMD/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 24 May 2025 05:10:14 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkgconf, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>> 2.3.0), libpbcopper-dev (>> 2.2.0), libhts-dev (>= 1.20+ds-2~), build-essential Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkgconf, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>> 2.3.0), libpbcopper-dev (>> 2.2.0), libhts-dev (>= 1.20+ds-2~), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-3OgQOb/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sat, 24 May 2025 05:11:07 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment Sat, 24 May 2025 05:11:13 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.27-riscv64 #1 SMP Debian 6.12.27-1 (2025-05-06) riscv64 (riscv64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-7 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.27-1 Package versions: apt_3.0.1 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.7 base-passwd_3.6.7 bash_5.2.37-2+b1 binutils_2.44-3 binutils-common_2.44-3 binutils-riscv64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 cmake_3.31.6-2 cmake-data_3.31.6-2 comerr-dev_2.1-1.47.2-1+b1 coreutils_9.7-2 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-riscv64-linux-gnu_14.2.0-19 cpp-riscv64-linux-gnu_4:14.2.0-1 d-shlibs_0.109 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.22 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b3 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-riscv64-linux-gnu_14.2.0-19 g++-riscv64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-riscv64-linux-gnu_14.2.0-19 gcc-riscv64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 googletest_1.16.0-1 grep_3.11-4 groff-base_1.23.0-8 gzip_1.13-1 hdf5-helpers_1.14.5+repack-3 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libaec-dev_1.1.3-1+b1 libaec0_1.1.3-1+b1 libapt-pkg7.0_3.0.1 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-3 libasan8_14.2.0-19 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.41-5 libboost-dev_1.83.0.2+b2 libboost1.83-dev_1.83.0-4.2 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-7 libc-dev-bin_2.41-7 libc6_2.41-7 libc6-dev_2.41-7 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-7 libcc1-0_14.2.0-19 libcom-err2_1.47.2-1+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl3t64-gnutls_8.13.0-5 libcurl4-gnutls-dev_8.13.0-5 libcurl4t64_8.13.0-5 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdeflate-dev_1.23-2 libdeflate0_1.23-2 libdpkg-perl_1.22.18 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.1-1 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_14.2.0-19 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgprofng0_2.44-3 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libgtest-dev_1.16.0-1 libhdf5-310_1.14.5+repack-3 libhdf5-cpp-310_1.14.5+repack-3 libhdf5-dev_1.14.5+repack-3 libhdf5-fortran-310_1.14.5+repack-3 libhdf5-hl-310_1.14.5+repack-3 libhdf5-hl-cpp-310_1.14.5+repack-3 libhdf5-hl-fortran-310_1.14.5+repack-3 libhogweed6t64_3.10.1-1 libhts-dev_1.21+ds-1 libhts3t64_1.21+ds-1 libhtscodecs2_1.6.1-2 libidn2-0_2.3.8-2 libidn2-dev_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libjpeg-dev_1:2.1.5-4 libjpeg62-turbo_1:2.1.5-4 libjpeg62-turbo-dev_1:2.1.5-4 libjsoncpp26_1.9.6-3 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 liblastlog2-2_2.41-5 libldap-dev_2.6.9+dfsg-2 libldap2_2.6.9+dfsg-2 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma-dev_5.8.1-1 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1.1 libnghttp2-dev_1.64.0-1.1 libnghttp3-9_1.8.0-1 libnghttp3-dev_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls-dev_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libngtcp2-dev_1.11.0-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpbbam-dev_2.4.0+dfsg-1+b4 libpbbam2.4.0_2.4.0+dfsg-1+b4 libpbcopper-dev_2.3.0+dfsg-2+b2 libpbcopper2.3.0_2.3.0+dfsg-2+b2 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-3 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libproc2-0_2:4.0.4-8 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.13.3-1 libpython3.13-minimal_3.13.3-2 libpython3.13-stdlib_3.13.3-2 libreadline8t64_8.2-6 librhash1_1.4.5-1 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libselinux1_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-4 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.5.0-1 libssl3t64_3.5.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsystemd0_257.5-2 libsz2_1.1.3-1+b1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.5-2 libunbound8_1.22.0-1+b1 libunistring5_1.3-2 libuuid1_2.41-5 libuv1t64_1.50.0-2 libxml2_2.12.7+dfsg+really2.9.14-0.4 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.27-1 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_13.0.0 meson_1.7.0-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 nettle-dev_3.10.1-1 ninja-build_1.12.1-1 openssl-provider-legacy_3.5.0-1 patch_2.8-1 perl_5.40.1-3 perl-base_5.40.1-3 perl-modules-5.40_5.40.1-3 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 procps_2:4.0.4-8 python3_3.13.3-1 python3-autocommand_2.2.2-3 python3-inflect_7.3.1-2 python3-jaraco.context_6.0.1-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.3-1 python3-more-itertools_10.7.0-1 python3-pkg-resources_78.1.0-1.2 python3-setuptools_78.1.0-1.2 python3-typeguard_4.4.2-1 python3-typing-extensions_4.13.2-1 python3-zipp_3.21.0-1 python3.13_3.13.3-2 python3.13-minimal_3.13.3-2 readline-common_8.2-6 rpcsvc-proto_1.4.3-1+b2 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-2 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-3 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Sat, 24 May 2025 05:11:14 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbseqlib Binary: libblasr-dev, libblasr5.3.5, libpbseq, libpbseq-dev, libpbdata-dev, libpbihdf-dev Architecture: any Version: 5.3.5+dfsg-10 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/blasr_libcpp Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git Build-Depends: debhelper-compat (= 13), d-shlibs, meson, pkgconf, cmake, googletest, libgtest-dev, zlib1g-dev, libhdf5-dev, libboost-dev, libpbbam-dev (>> 2.3.0), libpbcopper-dev (>> 2.2.0), libhts-dev (>= 1.20+ds-2~) Package-List: libblasr-dev deb libdevel optional arch=any libblasr5.3.5 deb libs optional arch=any libpbdata-dev deb libdevel optional arch=any libpbihdf-dev deb libdevel optional arch=any libpbseq deb science optional arch=any libpbseq-dev deb libdevel optional arch=any Checksums-Sha1: 52e008afcd7a07d4df0a18e2299c8b8e7c480e91 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz 7e0ab31c3c59e5e5cd0371eeb2f2e8d6b7322a6f 12128 pbseqlib_5.3.5+dfsg-10.debian.tar.xz Checksums-Sha256: 81afecd5d7ccb3cd70ed42cd8afa64876fde4c0deee89e1112c7f3b3d6ee8c49 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz 11b8914e4085df9e664c1c4c6f605dc5fe9d2afb287bd3df862a1dea909bb388 12128 pbseqlib_5.3.5+dfsg-10.debian.tar.xz Files: 53cbc19d8c807640dafbd04fcc47f86e 973104 pbseqlib_5.3.5+dfsg.orig.tar.xz 2c908efaad6476086fc08f039372efc4 12128 pbseqlib_5.3.5+dfsg-10.debian.tar.xz Dgit: dee9d721b7cc5229e7565ec841012cc621689c86 debian archive/debian/5.3.5+dfsg-10 https://git.dgit.debian.org/pbseqlib 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pbseqlib in /build/reproducible-path/pbseqlib-5.3.5+dfsg dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg.orig.tar.xz dpkg-source: info: unpacking pbseqlib_5.3.5+dfsg-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hdf5-1.10.1-support.patch dpkg-source: info: applying hdf5-1.10.0-support.patch dpkg-source: info: applying meson.patch dpkg-source: info: applying static+shared_lib.patch dpkg-source: info: applying gcc-13.patch dpkg-source: info: applying pbbam_2.3.0 dpkg-source: info: applying gcc-14.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1747073956 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package pbseqlib dpkg-buildpackage: info: source version 5.3.5+dfsg-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' dh_auto_clean find -name defines.mk -delete rm -f pbdata/libconfig.h make[1]: Leaving directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-riscv64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/riscv64-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/pbseqlib-5.3.5+dfsg Build dir: /build/reproducible-path/pbseqlib-5.3.5+dfsg/obj-riscv64-linux-gnu Build type: native build Project name: libblasr Project version: 5.3.5 C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-19) 14.2.0") C++ linker for the host machine: c++ ld.bfd 2.44 Host machine cpu family: riscv64 Host machine cpu: riscv64 Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency Boost found: YES 1.83.0 (/usr/include) Run-time dependency pbbam found: YES 2.4.0 Run-time dependency zlib found: YES 1.3.1 Run-time dependency htslib found: YES 1.21 Library rt found: YES Run-time dependency HDF5 for cpp found: YES 1.14.5 Configuring LibBlasrConfig.h using configuration Program tools/check-formatting found: YES (/build/reproducible-path/pbseqlib-5.3.5+dfsg/tools/check-formatting) Run-time dependency GTest found: YES 1.15.0 Build targets in project: 3 NOTICE: Future-deprecated features used: * 0.56.0: {'meson.build_root', 'meson.source_root'} libblasr 5.3.5 User defined options buildtype : plain libdir : lib/riscv64-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build -a cd obj-riscv64-linux-gnu && LC_ALL=C.UTF-8 ninja -j4 -v [1/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o -c ../hdf/BufferedHDF2DArray.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/BufferedHDF2DArray.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [2/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -MF libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o.d -o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o -c ../hdf/DatasetCollection.cpp [3/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -MF libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o.d -o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o -c ../hdf/BufferedHDFArray.cpp [4/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o -c ../hdf/HDFAtom.cpp [5/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o -c ../hdf/HDFAlnGroupGroup.cpp [6/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o -c ../hdf/HDFAttributable.cpp [7/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o -c ../hdf/HDFAlnInfoGroup.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFAlnInfoGroup.hpp:8, from ../hdf/HDFAlnInfoGroup.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [8/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o -c ../hdf/HDFCmpSupportedFields.cpp [9/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFData.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o -c ../hdf/HDFData.cpp [10/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o -c ../hdf/HDFBaxWriter.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFBaseCallsWriter.hpp:11, from ../hdf/HDFBaxWriter.hpp:12, from ../hdf/HDFBaxWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFBaseCallsWriter.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [11/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o -c ../hdf/HDFFile.cpp ../hdf/HDFFile.cpp: In member function ‘void HDFFile::Open(std::string, unsigned int, const H5::FileAccPropList&)’: ../hdf/HDFFile.cpp:34:75: warning: implicitly-declared ‘H5::H5File& H5::H5File::operator=(const H5::H5File&)’ is deprecated [-Wdeprecated-copy] 34 | hdfFile = H5File(fileName.c_str(), H5F_ACC_TRUNC, filePropList); | ^ In file included from /usr/include/hdf5/serial/H5Cpp.h:47, from ../hdf/HDFFile.hpp:8, from ../hdf/HDFFile.cpp:1: /usr/include/hdf5/serial/H5File.h:115:5: note: because ‘H5::H5File’ has user-provided ‘H5::H5File::H5File(const H5::H5File&)’ 115 | H5File(const H5File &original); | ^~~~~~ [12/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o -c ../hdf/HDFGroup.cpp [13/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o -c ../hdf/HDFCmpExperimentGroup.cpp [14/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o -c ../hdf/HDFBaseCallsWriter.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFBaseCallsWriter.hpp:11, from ../hdf/HDFBaseCallsWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFBaseCallsWriter.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [15/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o -c ../hdf/HDFPulseH5Writer.cpp [16/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o -c ../hdf/HDFNewBasReader.cpp [17/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o -c ../hdf/HDFPulseDataFile.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFScanDataReader.hpp:8, from ../hdf/HDFPulseDataFile.hpp:10, from ../hdf/HDFPulseDataFile.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFZMWReader.hpp:8, from ../hdf/HDFPulseDataFile.hpp:11: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [18/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o -c ../hdf/HDFPulseWriter.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFBaseCallsWriter.hpp:11, from ../hdf/HDFPulseWriter.hpp:12, from ../hdf/HDFPulseWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFBaseCallsWriter.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [19/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o -c ../hdf/HDFRegionsWriter.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionsWriter.hpp:9, from ../hdf/HDFRegionsWriter.cpp:3: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/HDFRegionsWriter.cpp: In member function ‘bool HDFRegionsWriter::Write(const std::vector&)’: ../hdf/HDFRegionsWriter.cpp:44:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 44 | for (auto annotation : annotations) | ^~~~~~~~~~~ In file included from ../pbdata/reads/RegionTable.hpp:17, from ../pbdata/SMRTSequence.hpp:14, from ../hdf/HDFWriterBase.hpp:17, from ../hdf/HDFRegionsWriter.hpp:13: ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ [20/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o -c ../hdf/HDFScanDataReader.cpp [21/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o -c ../hdf/HDFPulseCallsWriter.cpp In file included from ../hdf/HDFAtom.hpp:12, from ../hdf/HDFPulseCallsWriter.hpp:11, from ../hdf/HDFPulseCallsWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFPulseCallsWriter.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [22/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o -c ../hdf/HDFScanDataWriter.cpp [23/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o -c ../hdf/HDFRegionTableReader.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../hdf/HDFRegionTableReader.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [24/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o -c ../hdf/HDFWriterBase.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDFWriterBase.hpp:11, from ../hdf/HDFWriterBase.cpp:3: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [25/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o -c ../hdf/HDFZMWReader.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFZMWReader.hpp:8, from ../hdf/HDFZMWReader.cpp:2: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [26/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o -c ../alignment/algorithms/alignment/sdp/SDPFragment.cpp [27/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o -c ../hdf/HDFZMWMetricsWriter.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDFZMWMetricsWriter.hpp:6, from ../hdf/HDFZMWMetricsWriter.cpp:3: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [28/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o -c ../hdf/HDFUtils.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../hdf/HDFUtils.hpp:7, from ../hdf/HDFUtils.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ In file included from /usr/include/c++/14/cassert:44, from ../pbdata/reads/RegionTypeMap.hpp:7, from ../pbdata/reads/RegionAnnotation.hpp:17, from ../pbdata/reads/RegionTable.hpp:17, from ../pbdata/SMRTSequence.hpp:14, from ../hdf/HDFBasReader.hpp:21: ../hdf/HDFBasReader.hpp: In instantiation of ‘void T_HDFBasReader::GetMinMaxHoleNumber(UInt&, UInt&) [with T_Sequence = FASTASequence; UInt = unsigned int]’: ../hdf/HDFUtils.cpp:41:38: required from here 41 | basReader.GetMinMaxHoleNumber(minHole, maxHole); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../hdf/HDFBasReader.hpp:1233:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 1233 | assert(nReads >= 0); | ~~~~~~~^~~~ [29/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o -c ../alignment/algorithms/alignment/BaseScoreFunction.cpp [30/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o -c ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:9, from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/14/bits/alloc_traits.h:575:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 575 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:1288:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1288 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1289 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from ../alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:4: /usr/include/c++/14/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [31/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o -c ../alignment/algorithms/alignment/AlignmentUtils.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/AlignmentUtils.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/14/bits/alloc_traits.h:575:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 575 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:1288:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1288 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1289 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from ../alignment/algorithms/alignment/AlignmentUtils.hpp:4: /usr/include/c++/14/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [32/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -MF libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o.d -o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o -c ../hdf/HDFZMWWriter.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDFZMWWriter.hpp:10, from ../hdf/HDFZMWWriter.cpp:5: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ In file included from ../hdf/HDFZMWWriter.hpp:12: ../hdf/HDFWriterBase.hpp:43:18: warning: ‘virtual bool HDFWriterBase::WriteOneZmw(const SMRTSequence&, const std::vector&)’ was hidden [-Woverloaded-virtual=] 43 | virtual bool WriteOneZmw(const SMRTSequence& seq, const std::vector& regions); | ^~~~~~~~~~~ ../hdf/HDFZMWWriter.hpp:55:10: note: by ‘HDFZMWWriter::WriteOneZmw’ 55 | bool WriteOneZmw(const SMRTSequence& read); | ^~~~~~~~~~~ [33/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o -c ../alignment/algorithms/alignment/ExtendAlign.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/KBandAlign.hpp:10, from ../alignment/algorithms/alignment/ExtendAlign.hpp:9, from ../alignment/algorithms/alignment/ExtendAlign.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/14/bits/alloc_traits.h:575:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 575 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:1288:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1288 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1289 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/vector:63, from ../alignment/algorithms/alignment/ExtendAlign.hpp:6: /usr/include/c++/14/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [34/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o -c ../alignment/algorithms/alignment/IDSScoreFunction.cpp [35/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o -c ../alignment/algorithms/alignment/ScoreMatrices.cpp [36/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o -c ../alignment/algorithms/alignment/GuidedAlign.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/GuidedAlign.hpp:11, from ../alignment/algorithms/alignment/GuidedAlign.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/14/bits/alloc_traits.h:575:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 575 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:1288:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1288 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1289 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from ../alignment/algorithms/alignment/GuidedAlign.hpp:6: /usr/include/c++/14/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [37/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o -c ../alignment/algorithms/alignment/KBandAlign.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/algorithms/alignment/KBandAlign.hpp:10, from ../alignment/algorithms/alignment/KBandAlign.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/14/bits/alloc_traits.h:575:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 575 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:1288:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1288 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1289 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/vector:63, from ../alignment/algorithms/alignment/KBandAlign.hpp:7: /usr/include/c++/14/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [38/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o -c ../alignment/algorithms/anchoring/ClusterProbability.cpp [39/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o -c ../alignment/algorithms/alignment/StringToScoreMatrix.cpp [40/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o -c ../alignment/algorithms/anchoring/Coordinate.cpp [41/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o -c ../alignment/algorithms/sorting/DifferenceCovers.cpp [42/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o -c ../alignment/algorithms/alignment/QualityValueScoreFunction.cpp [43/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o -c ../alignment/algorithms/anchoring/BWTSearch.cpp [44/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o -c ../alignment/algorithms/anchoring/FindMaxInterval.cpp In file included from ../alignment/algorithms/anchoring/FindMaxInterval.hpp:16, from ../alignment/algorithms/anchoring/FindMaxInterval.cpp:1: ../alignment/statistics/VarianceAccumulator.hpp:14:27: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 14 | VarianceAccumulator(); | ^ ../alignment/statistics/VarianceAccumulator.hpp:14:27: note: remove the ‘< >’ [45/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o -c ../alignment/algorithms/sorting/qsufsort.cpp [46/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o -c ../alignment/datastructures/alignment/AlignmentContext.cpp [47/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o -c ../alignment/algorithms/sorting/MultikeyQuicksort.cpp [48/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o -c ../alignment/datastructures/alignment/AlignmentMap.cpp [49/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o -c ../alignment/datastructures/alignment/AlignmentStats.cpp [50/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o -MF libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o.d -o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o -c ../alignment/algorithms/sorting/LightweightSuffixArray.cpp [51/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o -c ../alignment/datastructures/alignment/CmpFile.cpp [52/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o -c ../alignment/datastructures/alignment/AlignmentCandidate.cpp [53/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o -c ../alignment/datastructures/alignment/Alignment.cpp ../alignment/datastructures/alignment/Alignment.cpp: In member function ‘void blasr::Alignment::CopyStats(blasr::Alignment&)’: ../alignment/datastructures/alignment/Alignment.cpp:35:47: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 35 | AlignmentStats::CopyStats((AlignmentStats)rhs); | ^~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8, from ../alignment/datastructures/alignment/Alignment.cpp:2: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ [54/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o -c ../alignment/datastructures/alignmentset/SAMQVConversion.cpp [55/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o -c ../alignment/datastructures/alignment/FilterCriteria.cpp [56/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o -c ../alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.cpp [57/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o -c ../alignment/datastructures/alignmentset/SAMSupplementalQVList.cpp [58/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o -c ../alignment/datastructures/anchoring/AnchorParameters.cpp [59/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o -c ../alignment/files/BaseSequenceIO.cpp [60/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o -c ../alignment/datastructures/anchoring/ClusterList.cpp [61/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o -c ../alignment/datastructures/anchoring/MatchPos.cpp [62/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -MF libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o.d -o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o -c ../alignment/datastructures/anchoring/WeightedInterval.cpp [63/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o -c ../alignment/files/CCSIterator.cpp [64/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o -c ../alignment/files/FragmentCCSIterator.cpp [65/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o -c ../alignment/format/CompareSequencesPrinter.cpp In file included from ../alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../alignment/format/CompareSequencesPrinter.hpp:7, from ../alignment/format/CompareSequencesPrinter.cpp:1: ../alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/14/bits/alloc_traits.h:575:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ 575 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:1288:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ 1288 | _Alloc_traits::construct(this->_M_impl, this->_M_impl._M_finish, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1289 | __x); | ~~~~ ../alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here 112 | alignments.push_back(alignment); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from ../alignment/datastructures/alignment/Alignment.hpp:8: ../alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ ../alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ../alignment/format/CompareSequencesPrinter.hpp:4: /usr/include/c++/14/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [66/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o -c ../alignment/format/IntervalPrinter.cpp [67/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o -c ../alignment/format/SAMPrinter.cpp [68/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o -c ../alignment/format/SummaryPrinter.cpp [69/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -MF libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o.d -o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o -c ../alignment/files/ReaderAgglomerate.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../alignment/files/ReaderAgglomerate.hpp:8, from ../alignment/files/ReaderAgglomerate.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [70/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -MF libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o.d -o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o -c ../alignment/format/SAMHeaderPrinter.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../alignment/files/ReaderAgglomerate.hpp:8, from ../alignment/format/SAMHeaderPrinter.hpp:14, from ../alignment/format/SAMHeaderPrinter.cpp:1: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [71/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o -MF libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o -c ../alignment/query/SequentialZmwGroupQuery.cpp [72/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -MF libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o.d -o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o -c ../alignment/query/PbiFilterZmwGroupQuery.cpp [73/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o -MF libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o.d -o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o -c ../alignment/qvs/QualityValueProfile.cpp [74/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o -c ../alignment/simulator/LengthHistogram.cpp In file included from /usr/include/c++/14/cassert:44, from ../alignment/statistics/StatUtils.hpp:5, from ../alignment/simulator/CDFMap.hpp:8, from ../alignment/simulator/LengthHistogram.hpp:8, from ../alignment/simulator/LengthHistogram.cpp:1: ../alignment/simulator/CDFMap.hpp: In instantiation of ‘int CDFMap::SelectRandomValue(T_Data&) [with T_Data = int]’: ../alignment/simulator/LengthHistogram.cpp:27:87: required from here 27 | void LengthHistogram::GetRandomLength(int &length) { lengthHistogram.SelectRandomValue(length); } | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ../alignment/simulator/CDFMap.hpp:37:23: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 37 | assert(cdf.size() >= 0); | ~~~~~~~~~~~^~~~ [75/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o -MF libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o.d -o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o -c ../alignment/statistics/cdfs.cpp [76/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o -c ../alignment/simulator/ContextSample.cpp [77/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o -MF libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o.d -o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o -c ../alignment/statistics/pdfs.cpp [78/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o -c ../alignment/simulator/ContextSet.cpp [79/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o -MF libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o.d -o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o -c ../alignment/tuples/BaseTuple.cpp [80/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o -c ../alignment/statistics/StatUtils.cpp [81/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o -MF libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o.d -o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o -c ../alignment/tuples/TupleMetrics.cpp [82/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o -c ../alignment/utils/BlasrFileUtils.cpp [83/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o -MF libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o.d -o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o -c ../alignment/simulator/QualitySample.cpp [84/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o -c ../alignment/utils/LogUtils.cpp [85/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o -c ../alignment/utils/PhredUtils.cpp [86/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o -MF libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o.d -o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o -c ../alignment/statistics/LookupAnchorDistribution.cpp [87/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o -c ../alignment/utils/RangeUtils.cpp [88/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o -MF libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o.d -o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o -c ../alignment/tuples/DNATuple.cpp [89/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o -MF libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o.d -o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o -c ../alignment/MappingMetrics.cpp [90/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o -MF libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o -c ../pbdata/alignment/CmpAlignment.cpp [91/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o -MF libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o.d -o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o -c ../alignment/utils/FileOfFileNames.cpp [92/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o -c ../pbdata/loadpulses/MovieAlnIndexLookupTable.cpp [93/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o -MF libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o.d -o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o -c ../alignment/utils/RegionUtils.cpp [94/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o -MF libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o -c ../pbdata/loadpulses/MetricField.cpp [95/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o -MF libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o -c ../pbdata/qvs/QualityTransform.cpp [96/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o -c ../pbdata/reads/AcqParams.cpp [97/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o -MF libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o -c ../pbdata/qvs/BlasrQualityValue.cpp [98/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o -c ../pbdata/reads/HoleXY.cpp [99/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o -c ../pbdata/metagenome/TitleTable.cpp [100/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o -c ../pbdata/reads/PulseBaseCommon.cpp [101/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o -MF libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o -c ../pbdata/amos/AfgBasWriter.cpp [102/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o -c ../pbdata/reads/ReadType.cpp [103/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o -c ../pbdata/reads/RegionAnnotation.cpp [104/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o -c ../pbdata/reads/RegionAnnotations.cpp ../pbdata/reads/RegionAnnotations.cpp: In constructor ‘RegionAnnotations::RegionAnnotations(UInt, const std::vector&, const std::vector&)’: ../pbdata/reads/RegionAnnotations.cpp:14:28: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 14 | for (auto annotation : annotations) { | ^~~~~~~~~~~ In file included from ../pbdata/reads/ReadInterval.hpp:4, from ../pbdata/reads/RegionAnnotations.hpp:10, from ../pbdata/reads/RegionAnnotations.cpp:4: ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector RegionAnnotations::RegionAnnotationsOfType(RegionType) const’: ../pbdata/reads/RegionAnnotations.cpp:37:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 37 | for (auto ra : table_) | ^~~~~~ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp: In member function ‘RegionAnnotation RegionAnnotations::TheHQRegion() const’: ../pbdata/reads/RegionAnnotations.cpp:65:22: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 65 | return hqs_[0]; | ^ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector RegionAnnotations::AdapterIntervals() const’: ../pbdata/reads/RegionAnnotations.cpp:85:34: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 85 | for (auto adapter : Adapters()) { | ^ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp: In member function ‘std::vector RegionAnnotations::SubreadIntervals(DNALength, bool, bool) const’: ../pbdata/reads/RegionAnnotations.cpp:103:42: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 103 | for (auto adapter : Adapters()) { | ^ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ ../pbdata/reads/RegionAnnotations.cpp:122:24: warning: implicitly-declared ‘constexpr RegionAnnotation::RegionAnnotation(const RegionAnnotation&)’ is deprecated [-Wdeprecated-copy] 122 | for (auto insert : inserts) { | ^~~~~~~ ../pbdata/reads/RegionAnnotation.hpp:115:26: note: because ‘RegionAnnotation’ has user-provided ‘RegionAnnotation& RegionAnnotation::operator=(const RegionAnnotation&)’ 115 | inline RegionAnnotation &RegionAnnotation::operator=(const RegionAnnotation &rhs) | ^~~~~~~~~~~~~~~~ [105/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o -c ../pbdata/reads/BaseFile.cpp [106/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o -c ../pbdata/reads/RegionTable.cpp [107/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o -c ../pbdata/reads/ZMWGroupEntry.cpp [108/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o -c ../pbdata/reads/PulseFile.cpp [109/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o -c ../pbdata/saf/AlnGroup.cpp [110/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o -c ../pbdata/saf/MovieInfo.cpp [111/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o -c ../pbdata/reads/RegionTypeMap.cpp [112/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o -c ../pbdata/saf/RefGroup.cpp [113/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o -MF libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o -c ../pbdata/saf/RefInfo.cpp [114/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o -MF libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o -c ../pbdata/reads/ScanData.cpp [115/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o -c ../pbdata/sam/ReadGroup.cpp [116/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o -c ../pbdata/sam/ReferenceSequence.cpp [117/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o -c ../pbdata/sam/SAMHeader.cpp [118/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o -c ../pbdata/utils/BitUtils.cpp [119/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o -c ../pbdata/sam/SAMAlignment.cpp [120/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o -MF libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o -c ../pbdata/sam/SAMKeywordValuePair.cpp [121/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o -c ../pbdata/utils/SMRTTitle.cpp [122/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o -c ../pbdata/utils/TimeUtils.cpp [123/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o -c ../pbdata/utils/SMRTReadUtils.cpp [124/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o -c ../pbdata/BlasrFASTAReader.cpp In file included from ../pbdata/FASTAReader.hpp:7, from ../pbdata/BlasrFASTAReader.cpp:2: ../pbdata/FASTASequence.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = FASTASequence; _Args = {FASTASequence}; _Tp = FASTASequence]’: /usr/include/c++/14/bits/alloc_traits.h:575:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = FASTASequence; _Args = {FASTASequence}; _Tp = FASTASequence; allocator_type = std::allocator]’ 575 | __a.construct(__p, std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:1075:26: required from ‘void std::__relocate_object_a(_Tp*, _Up*, _Allocator&) [with _Tp = FASTASequence; _Up = FASTASequence; _Allocator = allocator]’ 1075 | __traits::construct(__alloc, __dest, std::move(*__orig)); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:1103:26: required from ‘_ForwardIterator std::__relocate_a_1(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = allocator]’ 1103 | std::__relocate_object_a(std::__addressof(*__cur), | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 1104 | std::__addressof(*__first), __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:1145:33: required from ‘_ForwardIterator std::__relocate_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = FASTASequence*; _ForwardIterator = FASTASequence*; _Allocator = allocator]’ 1145 | return std::__relocate_a_1(std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1146 | std::__niter_base(__last), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1147 | std::__niter_base(__result), __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:509:26: required from ‘static std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_S_relocate(pointer, pointer, pointer, _Tp_alloc_type&) [with _Tp = FASTASequence; _Alloc = std::allocator; pointer = FASTASequence*; _Tp_alloc_type = std::vector::_Tp_alloc_type]’ 509 | return std::__relocate_a(__first, __last, __result, __alloc); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc:868:18: required from ‘void std::vector<_Tp, _Alloc>::_M_default_append(size_type) [with _Tp = FASTASequence; _Alloc = std::allocator; size_type = long unsigned int]’ 868 | _S_relocate(__old_start, __old_finish, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 | __new_start, _M_get_Tp_allocator()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:1016:4: required from ‘void std::vector<_Tp, _Alloc>::resize(size_type) [with _Tp = FASTASequence; _Alloc = std::allocator; size_type = long unsigned int]’ 1016 | _M_default_append(__new_size - size()); | ^~~~~~~~~~~~~~~~~ ../pbdata/BlasrFASTAReader.cpp:441:21: required from here 441 | sequences.resize(nSeq); | ~~~~~~~~~~~~~~~~^~~~~~ ../pbdata/FASTASequence.hpp:19:7: warning: implicitly-declared ‘constexpr DNASequence::DNASequence(const DNASequence&)’ is deprecated [-Wdeprecated-copy] 19 | class FASTASequence : public DNASequence | ^~~~~~~~~~~~~ In file included from ../pbdata/FASTASequence.hpp:13: ../pbdata/DNASequence.hpp:51:18: note: because ‘DNASequence’ has user-provided ‘DNASequence& DNASequence::operator=(const DNASequence&)’ 51 | DNASequence &operator=(const DNASequence &rhs); | ^~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from ../pbdata/FASTAReader.hpp:5: /usr/include/c++/14/bits/new_allocator.h:191:11: note: synthesized method ‘constexpr FASTASequence::FASTASequence(const FASTASequence&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [125/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o -MF libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o -c ../pbdata/ChangeListID.cpp [126/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o -MF libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o -c ../pbdata/BlasrFASTQReader.cpp [127/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o -c ../pbdata/CCSSequence.cpp [128/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -MF libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o -c ../pbdata/CommandLineParser.cpp [129/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o -c ../pbdata/DNASequence.cpp [130/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o -c ../pbdata/FASTASequence.cpp [131/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -MF libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o -c ../pbdata/NucConversion.cpp [132/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -MF libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o -c ../pbdata/GFFFile.cpp [133/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o -c ../pbdata/FASTQSequence.cpp [134/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o -c ../pbdata/MD5Utils.cpp [135/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -MF libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o -c ../pbdata/ReverseCompressIndex.cpp [136/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -MF libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -c ../pbdata/StringUtils.cpp [137/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o -c ../pbdata/PackedDNASequence.cpp [138/187] c++ -Ilibblasr.so.5.3.5.p -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -fPIC -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -MF libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o.d -o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o -c ../pbdata/SMRTSequence.cpp ../pbdata/SMRTSequence.cpp: In member function ‘void SMRTSequence::MadeFromSubreadsAsPolymerase(const std::vector&)’: ../pbdata/SMRTSequence.cpp:356:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 356 | for (auto subread : subreads) { | ^~~~~~~~ ../pbdata/SMRTSequence.cpp:210:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 210 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs) | ^~~~~~~~~~~~ ../pbdata/SMRTSequence.cpp:381:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 381 | for (auto subread : subreads) { | ^~~~~~~~ ../pbdata/SMRTSequence.cpp:210:15: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 210 | SMRTSequence &SMRTSequence::operator=(const SMRTSequence &rhs) | ^~~~~~~~~~~~ [139/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../unittest/alignment/files/FragmentCCSIterator_gtest.cpp:27: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [140/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o -c ../unittest/alignment/files/CCSIterator_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../unittest/alignment/files/CCSIterator_gtest.cpp:23: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [141/187] c++ -o libblasr.so.5.3.5 libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o -I/usr/include/hdf5/serial -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,-soname,libblasr.so.5.3.5 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -Wl,-rpath,/usr/lib/riscv64-linux-gnu/hdf5/serial -Wl,-rpath-link,/usr/lib/riscv64-linux-gnu/hdf5/serial -Wl,--start-group /usr/lib/riscv64-linux-gnu/libpbbam.so /usr/lib/riscv64-linux-gnu/libpbcopper.so /usr/lib/riscv64-linux-gnu/libz.so /usr/lib/riscv64-linux-gnu/libhts.so -lrt /usr/lib/riscv64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/riscv64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/riscv64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/riscv64-linux-gnu/hdf5/serial/libhdf5.so -Wl,--end-group [142/187] /usr/bin/meson --internal symbolextractor /build/reproducible-path/pbseqlib-5.3.5+dfsg/obj-riscv64-linux-gnu libblasr.so.5.3.5 libblasr.so.5.3.5 libblasr.so.5.3.5.p/libblasr.so.5.3.5.symbols [143/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o -c ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../unittest/alignment/files/FragmentCCSIterator_other_gtest.cpp:29: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [144/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o -c ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../alignment/files/ReaderAgglomerate.hpp:8, from ../unittest/alignment/files/ReaderAgglomerate_gtest.cpp:25: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [145/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMPrinter_gtest.cpp [146/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/AlignmentMap_gtest.cpp [147/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o -c ../unittest/alignment/datastructures/alignment/CmpIndexedStringTable_gtest.cpp [148/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o -c ../unittest/alignment/utils/FileUtils_gtest.cpp [149/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o -c ../unittest/alignment/format/SAMHeaderPrinter_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../alignment/files/ReaderAgglomerate.hpp:8, from ../alignment/format/SAMHeaderPrinter.hpp:14, from ../unittest/alignment/format/SAMHeaderPrinter_gtest.cpp:28: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [150/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/SequentialZmwGroupQuery_gtest.cpp [151/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o -c ../unittest/alignment/utils/RangeUtils_gtest.cpp [152/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o -c ../unittest/hdf/HDFScanDataWriter_gtest.cpp [153/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o -c ../unittest/alignment/query/PbiFilterZmwGroupQuery_gtest.cpp [154/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o -c ../unittest/alignment/utils/RegionUtils_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFRegionTableReader.hpp:9, from ../unittest/alignment/utils/RegionUtils_gtest.cpp:23: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [155/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o -c ../unittest/hdf/HDFZMWReader_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFZMWReader.hpp:8, from ../unittest/hdf/HDFZMWReader_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [156/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o -c ../unittest/hdf/HDFCCSReader_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../hdf/HDFCCSReader.hpp:4, from ../unittest/hdf/HDFCCSReader_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [157/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o -c ../unittest/hdf/HDF2DArray_gtest.cpp In file included from ../hdf/BufferedHDF2DArray.hpp:12, from ../hdf/HDF2DArray.hpp:4, from ../unittest/hdf/HDF2DArray_gtest.cpp:24: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [158/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o -c ../unittest/hdf/HDFPlsReader_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFPlsReader.hpp:8, from ../unittest/hdf/HDFPlsReader_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFPlsReader.hpp:9: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [159/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o -c ../unittest/hdf/HDFUtils_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../hdf/HDFUtils.hpp:7, from ../unittest/hdf/HDFUtils_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [160/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o -c ../unittest/pbdata/metagenome/TitleTable_gtest.cpp [161/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o -c ../unittest/hdf/HDFScanDataReader_gtest.cpp [162/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o -c ../unittest/pbdata/saf/RefInfo_gtest.cpp [163/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o -c ../unittest/pbdata/saf/MovieInfo_gtest.cpp [164/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o -c ../unittest/pbdata/saf/AlnGroup_gtest.cpp [165/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o -c ../unittest/pbdata/utils/SMRTTitle_gtest.cpp [166/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o -c ../unittest/pbdata/qvs/QualityValueVector_gtest.cpp [167/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o -c ../unittest/hdf/HDFBasReader_gtest.cpp In file included from ../hdf/DatasetCollection.hpp:9, from ../hdf/HDFBasReader.hpp:11, from ../unittest/hdf/HDFBasReader_gtest.cpp:22: ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:123:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from ../hdf/HDF2DArray.hpp:4, from ../hdf/HDFBasReader.hpp:12: ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:124:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:125:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:126:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:127:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:128:1: required from here 120 | void BufferedHDF2DArray::TypedWriteRow(const T *data, const H5::DataSpace &memorySpace, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: ../hdf/BufferedHDF2DArray.hpp:137:1: required from here 132 | void BufferedHDF2DArray::Read(DSLength startX, DSLength endX, DSLength startY, \ | ^~ ../hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ ../hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [168/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o -c ../unittest/pbdata/reads/RegionTypeMap_gtest.cpp [169/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o -c ../unittest/pbdata/reads/ReadType_gtest.cpp [170/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o -c ../unittest/pbdata/ScanData_gtest.cpp [171/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o -c ../unittest/pbdata/StringUtils_gtest.cpp [172/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o -c ../unittest/pbdata/reads/RegionAnnotations_gtest.cpp [173/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o -c ../unittest/pbdata/VectorUtils_gtest.cpp [174/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o -c ../unittest/pbdata/defs_gtest.cpp [175/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o -c ../unittest/pbdata/NucConversion_gtest.cpp [176/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o -c ../unittest/pbdata/ChangeListID_gtest.cpp [177/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o -c ../unittest/pbdata/SMRTSequence_gtest.cpp ../unittest/pbdata/SMRTSequence_gtest.cpp: In function ‘SMRTSequence _make_a_smrt_read_(const std::string&, const UInt&, DNALength, DNALength, const std::string&, bool, bool, bool, int, int, char, int, char)’: ../unittest/pbdata/SMRTSequence_gtest.cpp:66:12: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 66 | return smrt; | ^~~~ In file included from ../unittest/pbdata/SMRTSequence_gtest.cpp:24: ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ ../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymerase_Test::TestBody()’: ../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 133 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ In file included from /usr/include/c++/14/vector:66, from /usr/include/gtest/gtest.h:61, from ../unittest/pbdata/SMRTSequence_gtest.cpp:22: /usr/include/c++/14/bits/stl_vector.h:678:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 678 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp:133:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 133 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:678:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 678 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletion_Test::TestBody()’: ../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 192 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:678:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 678 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp:192:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 192 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:678:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 678 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp: In member function ‘virtual void SMRTSequenceTest_MadeFromSubreadsAsPolymeraseNoInsertionNoDeletionNoSubstitution_Test::TestBody()’: ../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 246 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:678:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 678 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ ../unittest/pbdata/SMRTSequence_gtest.cpp:246:39: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 246 | read3.MadeFromSubreadsAsPolymerase({read1, read2}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ../pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ /usr/include/c++/14/bits/stl_vector.h:678:43: note: initializing argument 1 of ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = SMRTSequence; _Alloc = std::allocator; allocator_type = std::allocator]’ 678 | vector(initializer_list __l, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ [178/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o -c ../unittest/pbdata/FASTQReader_gtest.cpp [179/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o -c ../unittest/pbdata/SeqUtils_gtest.cpp [180/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o -c ../unittest/pbdata/FASTASequence_gtest.cpp [181/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o -c ../unittest/pbdata/utils_gtest.cpp [182/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o -c ../unittest/pbdata/CCSSequence_gtest.cpp [183/187] rm -f libblasr.a && gcc-ar csrD libblasr.a libblasr.so.5.3.5.p/hdf_BufferedHDF2DArray.cpp.o libblasr.so.5.3.5.p/hdf_BufferedHDFArray.cpp.o libblasr.so.5.3.5.p/hdf_DatasetCollection.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnGroupGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAlnInfoGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFAtom.cpp.o libblasr.so.5.3.5.p/hdf_HDFAttributable.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFBaxWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpExperimentGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFCmpSupportedFields.cpp.o libblasr.so.5.3.5.p/hdf_HDFData.cpp.o libblasr.so.5.3.5.p/hdf_HDFFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFGroup.cpp.o libblasr.so.5.3.5.p/hdf_HDFNewBasReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseCallsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseDataFile.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseH5Writer.cpp.o libblasr.so.5.3.5.p/hdf_HDFPulseWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFRegionTableReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFScanDataWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFUtils.cpp.o libblasr.so.5.3.5.p/hdf_HDFWriterBase.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWMetricsWriter.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWReader.cpp.o libblasr.so.5.3.5.p/hdf_HDFZMWWriter.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SDPFragment.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_sdp_SparseDynamicProgramming.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_AlignmentUtils.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_BaseScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ExtendAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_GuidedAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_IDSScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_KBandAlign.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_QualityValueScoreFunction.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_ScoreMatrices.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_alignment_StringToScoreMatrix.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_BWTSearch.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_ClusterProbability.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_Coordinate.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_anchoring_FindMaxInterval.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_DifferenceCovers.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_LightweightSuffixArray.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_MultikeyQuicksort.cpp.o libblasr.so.5.3.5.p/alignment_algorithms_sorting_qsufsort.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentCandidate.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentContext.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_Alignment.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentMap.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_AlignmentStats.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_CmpFile.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_FilterCriteria.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignment_SAMToAlignmentCandidateAdapter.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMQVConversion.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_alignmentset_SAMSupplementalQVList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_AnchorParameters.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_ClusterList.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_MatchPos.cpp.o libblasr.so.5.3.5.p/alignment_datastructures_anchoring_WeightedInterval.cpp.o libblasr.so.5.3.5.p/alignment_files_BaseSequenceIO.cpp.o libblasr.so.5.3.5.p/alignment_files_CCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_FragmentCCSIterator.cpp.o libblasr.so.5.3.5.p/alignment_files_ReaderAgglomerate.cpp.o libblasr.so.5.3.5.p/alignment_format_CompareSequencesPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_IntervalPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMHeaderPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SAMPrinter.cpp.o libblasr.so.5.3.5.p/alignment_format_SummaryPrinter.cpp.o libblasr.so.5.3.5.p/alignment_query_PbiFilterZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_query_SequentialZmwGroupQuery.cpp.o libblasr.so.5.3.5.p/alignment_qvs_QualityValueProfile.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSample.cpp.o libblasr.so.5.3.5.p/alignment_simulator_ContextSet.cpp.o libblasr.so.5.3.5.p/alignment_simulator_LengthHistogram.cpp.o libblasr.so.5.3.5.p/alignment_simulator_QualitySample.cpp.o libblasr.so.5.3.5.p/alignment_statistics_cdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_LookupAnchorDistribution.cpp.o libblasr.so.5.3.5.p/alignment_statistics_pdfs.cpp.o libblasr.so.5.3.5.p/alignment_statistics_StatUtils.cpp.o libblasr.so.5.3.5.p/alignment_tuples_BaseTuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_DNATuple.cpp.o libblasr.so.5.3.5.p/alignment_tuples_TupleMetrics.cpp.o libblasr.so.5.3.5.p/alignment_utils_BlasrFileUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_FileOfFileNames.cpp.o libblasr.so.5.3.5.p/alignment_utils_LogUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_PhredUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RangeUtils.cpp.o libblasr.so.5.3.5.p/alignment_utils_RegionUtils.cpp.o libblasr.so.5.3.5.p/alignment_MappingMetrics.cpp.o libblasr.so.5.3.5.p/pbdata_alignment_CmpAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_amos_AfgBasWriter.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MetricField.cpp.o libblasr.so.5.3.5.p/pbdata_loadpulses_MovieAlnIndexLookupTable.cpp.o libblasr.so.5.3.5.p/pbdata_metagenome_TitleTable.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_BlasrQualityValue.cpp.o libblasr.so.5.3.5.p/pbdata_qvs_QualityTransform.cpp.o libblasr.so.5.3.5.p/pbdata_reads_AcqParams.cpp.o libblasr.so.5.3.5.p/pbdata_reads_BaseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_HoleXY.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseBaseCommon.cpp.o libblasr.so.5.3.5.p/pbdata_reads_PulseFile.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ReadType.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotation.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionAnnotations.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTable.cpp.o libblasr.so.5.3.5.p/pbdata_reads_RegionTypeMap.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ScanData.cpp.o libblasr.so.5.3.5.p/pbdata_reads_ZMWGroupEntry.cpp.o libblasr.so.5.3.5.p/pbdata_saf_AlnGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_MovieInfo.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefGroup.cpp.o libblasr.so.5.3.5.p/pbdata_saf_RefInfo.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReadGroup.cpp.o libblasr.so.5.3.5.p/pbdata_sam_ReferenceSequence.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMAlignment.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMHeader.cpp.o libblasr.so.5.3.5.p/pbdata_sam_SAMKeywordValuePair.cpp.o libblasr.so.5.3.5.p/pbdata_utils_BitUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTReadUtils.cpp.o libblasr.so.5.3.5.p/pbdata_utils_SMRTTitle.cpp.o libblasr.so.5.3.5.p/pbdata_utils_TimeUtils.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTAReader.cpp.o libblasr.so.5.3.5.p/pbdata_BlasrFASTQReader.cpp.o libblasr.so.5.3.5.p/pbdata_CCSSequence.cpp.o libblasr.so.5.3.5.p/pbdata_ChangeListID.cpp.o libblasr.so.5.3.5.p/pbdata_CommandLineParser.cpp.o libblasr.so.5.3.5.p/pbdata_DNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTASequence.cpp.o libblasr.so.5.3.5.p/pbdata_FASTQSequence.cpp.o libblasr.so.5.3.5.p/pbdata_GFFFile.cpp.o libblasr.so.5.3.5.p/pbdata_MD5Utils.cpp.o libblasr.so.5.3.5.p/pbdata_NucConversion.cpp.o libblasr.so.5.3.5.p/pbdata_PackedDNASequence.cpp.o libblasr.so.5.3.5.p/pbdata_ReverseCompressIndex.cpp.o libblasr.so.5.3.5.p/pbdata_SMRTSequence.cpp.o libblasr.so.5.3.5.p/pbdata_StringUtils.cpp.o [184/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o -c ../unittest/pbdata/FASTQSequence_gtest.cpp [185/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -c ../unittest/pbdata/FASTAReader_gtest.cpp [186/187] c++ -Iunittest/libblasr_unittest.p -Iunittest -I../unittest -I. -I.. -I/usr/include/hdf5/serial -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 -DGTEST_HAS_PTHREAD=1 -DBOOST_ALL_NO_LIB -Wno-delete-non-virtual-dtor -Wno-unused-variable -Wno-non-virtual-dtor -MD -MQ unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -MF unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o.d -o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o -c ../unittest/pbdata/DNASequence_gtest.cpp [187/187] c++ -o unittest/libblasr_unittest unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_CCSIterator_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_ReaderAgglomerate_gtest.cpp.o unittest/libblasr_unittest.p/alignment_files_FragmentCCSIterator_other_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_format_SAMHeaderPrinter_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_CmpIndexedStringTable_gtest.cpp.o unittest/libblasr_unittest.p/alignment_datastructures_alignment_AlignmentMap_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_SequentialZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_query_PbiFilterZmwGroupQuery_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_FileUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RangeUtils_gtest.cpp.o unittest/libblasr_unittest.p/alignment_utils_RegionUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataWriter_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFCCSReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFZMWReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFPlsReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDF2DArray_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFUtils_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFBasReader_gtest.cpp.o unittest/libblasr_unittest.p/hdf_HDFScanDataReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_metagenome_TitleTable_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_RefInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_MovieInfo_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_saf_AlnGroup_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_SMRTTitle_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_qvs_QualityValueVector_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionTypeMap_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_ReadType_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_reads_RegionAnnotations_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ScanData_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_StringUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SMRTSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_NucConversion_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_VectorUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_defs_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_ChangeListID_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQReader_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_SeqUtils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_CCSSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_utils_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTQSequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_DNASequence_gtest.cpp.o unittest/libblasr_unittest.p/pbdata_FASTAReader_gtest.cpp.o -I/usr/include/hdf5/serial -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/pbseqlib-5.3.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_HDF5_1_10_1 -O3 '-Wl,-rpath,$ORIGIN/..:/usr/lib/riscv64-linux-gnu/hdf5/serial' -Wl,-rpath-link,/build/reproducible-path/pbseqlib-5.3.5+dfsg/obj-riscv64-linux-gnu/ -Wl,-rpath-link,/usr/lib/riscv64-linux-gnu/hdf5/serial -Wl,--start-group libblasr.so.5.3.5 /usr/lib/riscv64-linux-gnu/libpbbam.so /usr/lib/riscv64-linux-gnu/libpbcopper.so /usr/lib/riscv64-linux-gnu/libz.so /usr/lib/riscv64-linux-gnu/libhts.so -lrt /usr/lib/riscv64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so /usr/lib/riscv64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/riscv64-linux-gnu/hdf5/serial/libhdf5_hl.so /usr/lib/riscv64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/riscv64-linux-gnu/libgtest_main.a /usr/lib/riscv64-linux-gnu/libgtest.a -Wl,--end-group debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' /usr/bin/make -k gtest make[2]: Entering directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' make[2]: *** No rule to make target 'gtest'. make[2]: Leaving directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' make[1]: [debian/rules:30: override_dh_auto_test] Error 2 (ignored) make[1]: Leaving directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-riscv64-linux-gnu && DESTDIR=/build/reproducible-path/pbseqlib-5.3.5\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [0/1] Installing files Installing libblasr.so.5.3.5 to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/riscv64-linux-gnu Installing libblasr.a to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/riscv64-linux-gnu Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/obj-riscv64-linux-gnu/LibBlasrConfig.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/BufferedHDF2DArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/BufferedHDF2DArrayImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/BufferedHDFArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/BufferedHDFArrayImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/DatasetCollection.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/DatasetCollectionImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDF2DArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAlnGroupGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAlnGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAlnInfoGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAtom.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFAttributable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFBaseCallsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFBasReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFBasWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFBaxWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCCSReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpData.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpExperimentGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpRefAlignmentGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpRootGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCmpSupportedFields.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFCommonFG.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFConfig.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFData.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFFileLogGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFMovieInfoGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFNewBasReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPlsReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPlsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPulseCallsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPulseDataFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFPulseWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRefGroupGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRefInfoGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRegionsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRegionTableReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFRegionTableWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFScanDataReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFScanDataWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFSentinalFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFSMRTSequenceReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFWriteBuffer.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFWriterBase.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFZMWMetricsWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFZMWReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/hdf/HDFZMWWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/hdf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/FragmentSort.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/FragmentSortImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/NonoverlappingSparseDynamicProgramming.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SDPColumn.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SDPFragment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SDPSet.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SDPSetImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/sdp/VariableLengthSDPFragment.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment/sdp Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AffineGuidedAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AffineKBandAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AlignmentFormats.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AlignmentUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/BaseScoreFunction.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/ExtendAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/FullQVAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/GraphPaper.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/GraphPaperImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/GuidedAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/IDSScoreFunction.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/KBandAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/OneGapAlignment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/QualityValueScoreFunction.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/ScoreMatrices.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/SDPAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/SDPAlignImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/StringToScoreMatrix.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/SWAlign.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/alignment/SWAlignImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/BasicEndpoint.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/BasicEndpointImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/BWTSearch.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/BWTSearchImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/ClusterProbability.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/Coordinate.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/FindMaxInterval.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/FindMaxIntervalImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/GlobalChain.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/GlobalChainImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISPValue.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISPValueImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISPValueWeightor.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISPValueWeightorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISQValueWeightor.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISSizeWeightor.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LISSizeWeightorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LongestIncreasingSubsequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/LongestIncreasingSubsequenceImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/MapBySuffixArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/MapBySuffixArrayImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/PrioritySearchTree.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/PrioritySearchTreeImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/ScoreAnchors.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/anchoring/ScoreAnchorsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/compare/CompareStrings.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/compare Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/DifferenceCovers.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/Karkkainen.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/LightweightSuffixArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/MultikeyQuicksort.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/algorithms/sorting/qsufsort.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/algorithms/sorting Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/bwt/BWT.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/bwt Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/bwt/Occ.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/bwt Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/bwt/PackedHash.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/bwt Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/bwt/Pos.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/bwt Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignedPair.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentCandidate.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentContext.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentGapList.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/Alignment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentMap.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/AlignmentStats.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/ByteAlignment.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/CmpFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/CmpIndexedStringTable.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/CmpReadGroupTable.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/CmpRefSeqTable.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/FilterCriteria.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/Path.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignment/SAMToAlignmentCandidateAdapter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignmentset/SAMQVConversion.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/alignmentset/SAMSupplementalQVList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/alignmentset Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/anchoring/AnchorParameters.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/anchoring/ClusterList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/anchoring/MatchPos.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/datastructures/anchoring/WeightedInterval.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/datastructures/anchoring Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/BaseSequenceIO.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/CCSIterator.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/FragmentCCSIterator.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/ReaderAgglomerate.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/files/ReaderAgglomerateImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/files Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/BAMPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/BAMPrinterImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/CompareSequencesPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/CompareSequencesPrinterImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/IntervalPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/SAMHeaderPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/SAMPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/SAMPrinterImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/StickAlignmentPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/SummaryPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/VulgarPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/format/XMLPrinter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/format Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/ipc/SharedMemoryAllocator.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/ipc Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/query/PbiFilterZmwGroupQuery.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/query Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/query/SequentialZmwGroupQuery.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/query Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/qvs/QualityValueProfile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/CDFMap.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/ContextOutputList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/ContextSample.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/ContextSet.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/LengthHistogram.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/OutputList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/OutputSample.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/OutputSampleList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/OutputSampleListSet.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/simulator/QualitySample.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/simulator Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/AnchorDistributionTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/cdfs.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/LookupAnchorDistribution.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/pdfs.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/StatUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/StatUtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/VarianceAccumulator.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/statistics/VarianceAccumulatorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/statistics Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/LCPTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/SharedSuffixArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/ssort.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/SuffixArray.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/suffixarray/SuffixArrayTypes.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/suffixarray Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/BaseTuple.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/CompressedDNATuple.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/CountedTuple.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/DNATuple.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/DNATupleImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/DNATupleList.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/HashedTupleList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/HashedTupleListImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleCountTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleCountTableImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/tuple.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleList.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleListImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleMask.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleMatching.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleMatchingImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleMetrics.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleOperations.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/tuples/TupleTranslations.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/tuples Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/FileOfFileNames.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/FileUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/LogUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/PhredUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/RangeUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/RegionUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/RegionUtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/utils/SimpleXMLUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/alignment/MappingMetrics.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/alignment/CmpAlignment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/alignment/CmpAlignmentImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/alignment Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/amos/AfgBasWriter.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/amos Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/loadpulses/MetricField.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/loadpulses Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/loadpulses/MovieAlnIndexLookupTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/loadpulses Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/matrix/FlatMatrix.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/matrix Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/matrix/FlatMatrixImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/matrix Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/matrix/Matrix.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/matrix Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/matrix/MatrixImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/matrix Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/metagenome/FindRandomSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/metagenome Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/metagenome/SequenceIndexDatabase.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/metagenome Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/metagenome/SequenceIndexDatabaseImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/metagenome Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/metagenome/TitleTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/metagenome Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityTransform.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValue.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValueVector.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValueVectorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityTransform.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValue.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValueVector.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/qvs/QualityValueVectorImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/qvs Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/AcqParams.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/BaseFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/BaseFileImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/HoleXY.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/PulseBaseCommon.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/PulseFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/PulseFileImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/ReadInterval.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/ReadType.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/RegionAnnotation.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/RegionAnnotations.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/RegionTable.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/RegionTypeMap.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/ScanData.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/reads/ZMWGroupEntry.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/reads Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/AlnGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/AlnInfo.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/MovieInfo.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/RefGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/saf/RefInfo.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/saf Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/AlignmentSet.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/AlignmentSetImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/CigarString.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/ReadGroup.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/ReferenceSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMAlignment.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMFlag.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMHeader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMKeywordValuePair.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMKeywordValuePairImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/sam/SAMReaderImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/sam Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils/BitUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils/SMRTReadUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils/SMRTTitle.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils/TimeUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata/utils Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CCSSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/ChangeListID.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CommandLineParser.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/Compare4BitCompressed.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CompressedDNASequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CompressedSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/CompressedSequenceImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/defs.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/DNASequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/Enumerations.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/FASTAReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/FASTASequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/FASTQReader.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/FASTQSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/GFFFile.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/MD5Utils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/MD5UtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/NucConversion.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/PacBioDefs.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/PackedDNASequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/PrettyException.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/ReverseCompressIndex.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/SeqUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/SeqUtilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/SMRTSequence.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/StringUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/Types.h to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/utilsImpl.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/pbdata/VectorUtils.hpp to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/include/libblasr/pbdata Installing /build/reproducible-path/pbseqlib-5.3.5+dfsg/obj-riscv64-linux-gnu/meson-private/libblasr.pc to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/riscv64-linux-gnu/pkgconfig Installing symlink pointing to libblasr.so.5.3.5 to /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/riscv64-linux-gnu/libblasr.so debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' dh_install -p libpbdata-dev usr/include/libblasr/pbdata usr/include/pbseq dh_install -p libpbihdf-dev usr/include/libblasr/hdf usr/include/pbseq dh_install -p libblasr-dev usr/include/libblasr/alignment usr/include/pbseq find -L debian/*/usr/include/ -type f -regextype posix-egrep -not -regex '.*(hpp|h)$' -delete find debian/*/usr/include/ -name "*.mk" -delete d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --override s/libhdf5_serial_cpp103-dev/libhdf5-dev/ \ --override s/libpbbam1.6.0-dev/libpbbam-dev/ \ --override s/libpbcopper1.8.0-dev/libpbcopper-dev/ \ --movedev debian/tmp/usr/include/libblasr usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/riscv64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libblasr.so Library package automatic movement utility --> libhdf5-dev package exists. --> libpbbam-dev package exists. --> libpbcopper-dev package exists. set -e install -d -m 755 debian/libblasr-dev/usr/lib/riscv64-linux-gnu install -d -m 755 debian/libblasr5.3.5/usr/lib/riscv64-linux-gnu mv debian/tmp/usr/lib/riscv64-linux-gnu/libblasr.a debian/libblasr-dev/usr/lib/riscv64-linux-gnu mv debian/tmp/usr/lib/riscv64-linux-gnu/libblasr.so debian/libblasr-dev/usr/lib/riscv64-linux-gnu mv /build/reproducible-path/pbseqlib-5.3.5+dfsg/debian/tmp/usr/lib/riscv64-linux-gnu/libblasr.so.5.3.5 debian/libblasr5.3.5/usr/lib/riscv64-linux-gnu PKGDEV=libblasr-dev PKGSHL=libblasr5.3.5 install -d -m 755 debian/libblasr-dev/usr/include mv debian/tmp/usr/include/libblasr debian/libblasr-dev/usr/include install -d -m 755 debian/libblasr-dev/usr/lib/riscv64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libblasr-dev/usr/lib/riscv64-linux-gnu/pkgconfig mv debian/libblasr-dev/usr/include/libblasr debian/libblasr-dev/usr/include/pbseq mv debian/libblasr-dev/usr/include/pbseq/libblasr/LibBlasrConfig.h debian/libblasr-dev/usr/include/pbseq dh_install make[1]: Leaving directory '/build/reproducible-path/pbseqlib-5.3.5+dfsg' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libblasr-dev' in '../libblasr-dev_5.3.5+dfsg-10_riscv64.deb'. dpkg-deb: building package 'libpbihdf-dev' in '../libpbihdf-dev_5.3.5+dfsg-10_riscv64.deb'. dpkg-deb: building package 'libpbseq-dev' in '../libpbseq-dev_5.3.5+dfsg-10_riscv64.deb'. dpkg-deb: building package 'libblasr5.3.5-dbgsym' in '../libblasr5.3.5-dbgsym_5.3.5+dfsg-10_riscv64.deb'. dpkg-deb: building package 'libpbdata-dev' in '../libpbdata-dev_5.3.5+dfsg-10_riscv64.deb'. dpkg-deb: building package 'libpbseq' in '../libpbseq_5.3.5+dfsg-10_riscv64.deb'. dpkg-deb: building package 'libblasr5.3.5' in '../libblasr5.3.5_5.3.5+dfsg-10_riscv64.deb'. dpkg-genbuildinfo --build=any -O../pbseqlib_5.3.5+dfsg-10_riscv64.buildinfo dpkg-genchanges --build=any -O../pbseqlib_5.3.5+dfsg-10_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-05-24T05:55:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 24 May 2025 05:55:41 +0000 | +------------------------------------------------------------------------------+ pbseqlib_5.3.5+dfsg-10_riscv64.changes: --------------------------------------- Format: 1.8 Date: Mon, 12 May 2025 20:19:16 +0200 Source: pbseqlib Binary: libblasr-dev libblasr5.3.5 libblasr5.3.5-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev Architecture: riscv64 Version: 5.3.5+dfsg-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libblasr-dev - tools for aligning PacBio reads to target sequences (development libblasr5.3.5 - tools for aligning PacBio reads to target sequences libpbdata-dev - tools for handling PacBio sequences (development files) libpbihdf-dev - tools for handling PacBio hdf5 files (development files) libpbseq - library for analyzing PacBio sequencing data libpbseq-dev - library for analyzing PacBio sequencing data (development files) Closes: 1105136 Changes: pbseqlib (5.3.5+dfsg-10) unstable; urgency=medium . * Team upload. . [ Nilesh Patra ] * Revert "Get Aptly" . [ Étienne Mollier ] * d/control: unconditionally build-depend on GTest. (Closes: #1105136) * d/control: declare compliance to standards version 4.7.2. * d/patches/*: normalize dep3 headers. 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40812 libdevel optional libpbdata-dev_5.3.5+dfsg-10_riscv64.deb 2e5c565007756779b6ab7f40bf51c890 47272 libdevel optional libpbihdf-dev_5.3.5+dfsg-10_riscv64.deb db1a993ebf719ad3cd07cfe923a60f68 5072 libdevel optional libpbseq-dev_5.3.5+dfsg-10_riscv64.deb 8b7ed434bb79931dbba66b72122b86b8 5044 science optional libpbseq_5.3.5+dfsg-10_riscv64.deb 5edc1f098194606ddf3d412885404512 10284 science optional pbseqlib_5.3.5+dfsg-10_riscv64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Sat, 24 May 2025 05:55:45 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: pbseqlib Binary: libblasr-dev libblasr5.3.5 libblasr5.3.5-dbgsym libpbdata-dev libpbihdf-dev libpbseq libpbseq-dev Architecture: riscv64 Version: 5.3.5+dfsg-10 Checksums-Md5: c53e8fd3c5995fdb775a0503a5f41923 4139264 libblasr-dev_5.3.5+dfsg-10_riscv64.deb ce0c1fad1eb0ba89b9f0915fa0dd1d6f 7652068 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a0fdba7a8dfd019537845baef91585428b2b8f7c 5044 libpbseq_5.3.5+dfsg-10_riscv64.deb Checksums-Sha256: 004527b187bcd1e59360516f4893ec9e0585da41017d8baf48967848e7377260 4139264 libblasr-dev_5.3.5+dfsg-10_riscv64.deb 3e101e9d616d0c4401c72faf1fb41a95189002f802adfbe41b9a8510aeb8183f 7652068 libblasr5.3.5-dbgsym_5.3.5+dfsg-10_riscv64.deb 52c283c54648953576a04af2b51bb07e87763b929bd5eb4f784940777c01684a 1113784 libblasr5.3.5_5.3.5+dfsg-10_riscv64.deb 2762c9d766d152e3fe47cf9638c65b4b8f84afbb3ae5301e1b7a2bd0b92f4b3f 40812 libpbdata-dev_5.3.5+dfsg-10_riscv64.deb 5a7691861c3d10529e437faa7fd52ffd22f5260df92ce999b4fbb6726dcacc2f 47272 libpbihdf-dev_5.3.5+dfsg-10_riscv64.deb 6be702bc18db17bd7d9c3d1e0af47ab716d1b75f61f2cdbb5a58727e819a8fb3 5072 libpbseq-dev_5.3.5+dfsg-10_riscv64.deb 6f8ad50131c32f7dfe4b7adbfff619722ed72998888a5dfd4b8ef75b255a5e52 5044 libpbseq_5.3.5+dfsg-10_riscv64.deb Build-Origin: Debian Build-Architecture: riscv64 Build-Date: Sat, 24 May 2025 05:55:23 +0000 Build-Path: /build/reproducible-path/pbseqlib-5.3.5+dfsg Installed-Build-Depends: apt (= 3.0.1), autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.7), base-passwd (= 3.6.7), bash (= 5.2.37-2+b1), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-riscv64-linux-gnu (= 2.44-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), cmake (= 3.31.6-2), cmake-data (= 3.31.6-2), comerr-dev (= 2.1-1.47.2-1+b1), coreutils (= 9.7-2), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-riscv64-linux-gnu (= 14.2.0-19), cpp-riscv64-linux-gnu (= 4:14.2.0-1), d-shlibs (= 0.109), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debian-archive-keyring (= 2025.1), debianutils (= 5.22), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.18), dpkg-dev (= 1.22.18), dwz (= 0.15-1+b3), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-riscv64-linux-gnu (= 14.2.0-19), g++-riscv64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-riscv64-linux-gnu (= 14.2.0-19), gcc-riscv64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), googletest (= 1.16.0-1), grep (= 3.11-4), groff-base (= 1.23.0-8), gzip (= 1.13-1), hdf5-helpers (= 1.14.5+repack-3), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libaec-dev (= 1.1.3-1+b1), libaec0 (= 1.1.3-1+b1), libapt-pkg7.0 (= 3.0.1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.4-3), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblkid1 (= 2.41-5), libboost-dev (= 1.83.0.2+b2), libboost1.83-dev (= 1.83.0-4.2), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.41-7), libc-dev-bin (= 2.41-7), libc6 (= 2.41-7), libc6-dev (= 2.41-7), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-7), libcc1-0 (= 14.2.0-19), libcom-err2 (= 1.47.2-1+b1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libcurl3t64-gnutls (= 8.13.0-5), libcurl4-gnutls-dev (= 8.13.0-5), libcurl4t64 (= 8.13.0-5), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.278), libdebhelper-perl (= 13.24.2), libdeflate-dev (= 1.23-2), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.22.18), libelf1t64 (= 0.192-4), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.1-1), libffi8 (= 3.4.8-2), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran5 (= 14.2.0-19), libgmp-dev (= 2:6.3.0+dfsg-3), libgmp10 (= 2:6.3.0+dfsg-3), libgmpxx4ldbl (= 2:6.3.0+dfsg-3), libgnutls-dane0t64 (= 3.8.9-2), libgnutls-openssl27t64 (= 3.8.9-2), libgnutls28-dev (= 3.8.9-2), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libgtest-dev (= 1.16.0-1), libhdf5-310 (= 1.14.5+repack-3), libhdf5-cpp-310 (= 1.14.5+repack-3), libhdf5-dev (= 1.14.5+repack-3), libhdf5-fortran-310 (= 1.14.5+repack-3), libhdf5-hl-310 (= 1.14.5+repack-3), libhdf5-hl-cpp-310 (= 1.14.5+repack-3), libhdf5-hl-fortran-310 (= 1.14.5+repack-3), libhogweed6t64 (= 3.10.1-1), libhts-dev (= 1.21+ds-1), libhts3t64 (= 1.21+ds-1), libhtscodecs2 (= 1.6.1-2), libidn2-0 (= 2.3.8-2), libidn2-dev (= 2.3.8-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libjpeg-dev (= 1:2.1.5-4), libjpeg62-turbo (= 1:2.1.5-4), libjpeg62-turbo-dev (= 1:2.1.5-4), libjsoncpp26 (= 1.9.6-3), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblastlog2-2 (= 2.41-5), libldap-dev (= 2.6.9+dfsg-2), libldap2 (= 2.6.9+dfsg-2), liblsan0 (= 14.2.0-19), liblz4-1 (= 1.10.0-4), liblzma-dev (= 5.8.1-1), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1.1), libnghttp2-dev (= 1.64.0-1.1), libnghttp3-9 (= 1.8.0-1), libnghttp3-dev (= 1.8.0-1), libngtcp2-16 (= 1.11.0-1), libngtcp2-crypto-gnutls-dev (= 1.11.0-1), libngtcp2-crypto-gnutls8 (= 1.11.0-1), libngtcp2-dev (= 1.11.0-1), libp11-kit-dev (= 0.25.5-3), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpbbam-dev (= 2.4.0+dfsg-1+b4), libpbbam2.4.0 (= 2.4.0+dfsg-1+b4), libpbcopper-dev (= 2.3.0+dfsg-2+b2), libpbcopper2.3.0 (= 2.3.0+dfsg-2+b2), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-3), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libproc2-0 (= 2:4.0.4-8), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-stdlib (= 3.13.3-1), libpython3.13-minimal (= 3.13.3-2), libpython3.13-stdlib (= 3.13.3-2), libreadline8t64 (= 8.2-6), librhash1 (= 1.4.5-1), librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b5), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-4), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.0-1), libssl3t64 (= 3.5.0-1), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.5-2), libsz2 (= 1.1.3-1+b1), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.5-2), libunbound8 (= 1.22.0-1+b1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libuv1t64 (= 1.50.0-2), libxml2 (= 2.12.7+dfsg+really2.9.14-0.4), libxxhash0 (= 0.8.3-2), libzstd-dev (= 1.5.7+dfsg-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.27-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 13.0.0), meson (= 1.7.0-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), nettle-dev (= 3.10.1-1), ninja-build (= 1.12.1-1), openssl-provider-legacy (= 3.5.0-1), patch (= 2.8-1), perl (= 5.40.1-3), perl-base (= 5.40.1-3), perl-modules-5.40 (= 5.40.1-3), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-8), python3 (= 3.13.3-1), python3-autocommand (= 2.2.2-3), python3-inflect (= 7.3.1-2), python3-jaraco.context (= 6.0.1-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.3-1), python3-more-itertools (= 10.7.0-1), python3-pkg-resources (= 78.1.0-1.2), python3-setuptools (= 78.1.0-1.2), python3-typeguard (= 4.4.2-1), python3-typing-extensions (= 4.13.2-1), python3-zipp (= 3.21.0-1), python3.13 (= 3.13.3-2), python3.13-minimal (= 3.13.3-2), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1+b2), sed (= 4.9-2), sensible-utils (= 0.0.25), sqv (= 1.3.0-2), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-3), util-linux (= 2.41-5), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1747073956" +------------------------------------------------------------------------------+ | Package contents Sat, 24 May 2025 05:55:46 +0000 | +------------------------------------------------------------------------------+ libblasr-dev_5.3.5+dfsg-10_riscv64.deb -------------------------------------- new Debian package, version 2.0. size 4139264 bytes: control archive=9480 bytes. 807 bytes, 18 lines control 45418 bytes, 467 lines md5sums Package: libblasr-dev Source: pbseqlib Version: 5.3.5+dfsg-10 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 38958 Depends: libblasr5.3.5 (= 5.3.5+dfsg-10), libpbdata-dev (= 5.3.5+dfsg-10), libhdf5-dev, libpbbam-dev, libpbcopper-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/PacificBiosciences/blasr_libcpp Description: tools for aligning PacBio reads to target sequences (development files) Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment. . 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libpbbam2.4.0 (>= 2.4.0+dfsg), libpbcopper2.3.0 (>= 2.3.0+dfsg), libstdc++6 (>= 13.1) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/PacificBiosciences/blasr_libcpp Description: tools for aligning PacBio reads to target sequences Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment. . 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analyzing PacBio sequencing data (development files) Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment. . 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This library contains three sub-libraries, including pbdata, hdf and alignment. . This is a metapackage that depends on the pbseqlib component shared libraries. drwxr-xr-x root/root 0 2025-05-12 18:19 ./ drwxr-xr-x root/root 0 2025-05-12 18:19 ./usr/ drwxr-xr-x root/root 0 2025-05-12 18:19 ./usr/share/ drwxr-xr-x root/root 0 2025-05-12 18:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-12 18:19 ./usr/share/doc/libpbseq/ -rw-r--r-- root/root 1793 2025-05-12 18:19 ./usr/share/doc/libpbseq/changelog.Debian.gz -rw-r--r-- root/root 4767 2025-05-12 18:19 ./usr/share/doc/libpbseq/copyright +------------------------------------------------------------------------------+ | Post Build Sat, 24 May 2025 05:56:16 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 24 May 2025 05:56:16 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 24 May 2025 05:56:40 +0000 | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 545536 Build-Time: 2629 Distribution: unstable Host Architecture: riscv64 Install-Time: 53 Job: /srv/rebuilderd/tmp/rebuilderdHxyoMD/inputs/pbseqlib_5.3.5+dfsg-10.dsc Machine Architecture: riscv64 Package: pbseqlib Package-Time: 2885 Source-Version: 5.3.5+dfsg-10 Space: 545536 Status: successful Version: 5.3.5+dfsg-10 -------------------------------------------------------------------------------- Finished at 2025-05-24T05:55:28Z Build needed 00:48:05, 545536k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdHxyoMD/out checking libblasr-dev_5.3.5+dfsg-10_riscv64.deb: size... sha256... sha1... md5... all OK checking libblasr5.3.5-dbgsym_5.3.5+dfsg-10_riscv64.deb: size... sha1... md5... sha256... all OK checking libblasr5.3.5_5.3.5+dfsg-10_riscv64.deb: size... sha256... sha1... md5... all OK checking libpbdata-dev_5.3.5+dfsg-10_riscv64.deb: size... sha1... md5... sha256... all OK checking libpbihdf-dev_5.3.5+dfsg-10_riscv64.deb: size... sha256... md5... sha1... all OK checking libpbseq-dev_5.3.5+dfsg-10_riscv64.deb: size... sha1... md5... sha256... all OK checking libpbseq_5.3.5+dfsg-10_riscv64.deb: size... sha256... sha1... md5... all OK +------------------------------------------------------------------------------+ + set +x | Finished running debrebuild Sat, 24 May 2025 05:56:43 +0000 | +------------------------------------------------------------------------------+