--- /tmp/rebuilderdFWumpj/inputs/hinge_0.5.0-7+b2_riscv64.deb +++ /tmp/rebuilderdFWumpj/out/hinge_0.5.0-7+b2_riscv64.deb ├── file list │ @@ -1,3 +1,3 @@ │ -rw-r--r-- 0 0 0 4 2024-11-05 02:40:05.000000 debian-binary │ -rw-r--r-- 0 0 0 2972 2024-11-05 02:40:05.000000 control.tar.xz │ --rw-r--r-- 0 0 0 461016 2024-11-05 02:40:05.000000 data.tar.xz │ +-rw-r--r-- 0 0 0 461116 2024-11-05 02:40:05.000000 data.tar.xz ├── data.tar.xz │ ├── data.tar │ │ ├── file list │ │ │ @@ -1,77 +1,77 @@ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-11-05 02:40:05.000000 ./ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-11-05 02:40:05.000000 ./usr/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-11-05 02:40:05.000000 ./usr/bin/ │ │ │ -rwxr-xr-x 0 root (0) root (0) 840 2017-08-13 23:05:39.000000 ./usr/bin/hinge │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-11-05 02:40:05.000000 ./usr/lib/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-11-05 02:40:05.000000 ./usr/lib/hinge/ │ │ │ -rwxr-xr-x 0 root (0) root (0) 494088 2024-11-05 02:40:05.000000 ./usr/lib/hinge/Reads_filter │ │ │ --rwxr-xr-x 0 root (0) root (0) 1717 2024-11-05 02:40:01.000000 ./usr/lib/hinge/Visualise_graph.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 1818 2024-11-05 02:40:01.000000 ./usr/lib/hinge/add_groundtruth.py │ │ │ --rw-r--r-- 0 root (0) root (0) 1496 2024-11-05 02:40:01.000000 ./usr/lib/hinge/add_groundtruth_json.py │ │ │ --rw-r--r-- 0 root (0) root (0) 946 2024-11-05 02:40:01.000000 ./usr/lib/hinge/clip_ends.py │ │ │ --rw-r--r-- 0 root (0) root (0) 2614 2024-11-05 02:40:01.000000 ./usr/lib/hinge/compute_n50_from_draft.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 5482 2024-11-05 02:40:01.000000 ./usr/lib/hinge/condense_graph.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 6886 2024-11-05 02:40:01.000000 ./usr/lib/hinge/condense_graph_and_annotate.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 8841 2024-11-05 02:40:01.000000 ./usr/lib/hinge/condense_graph_annotate_clip_ends.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 7179 2024-11-05 02:40:01.000000 ./usr/lib/hinge/condense_graph_create_gfa_compute_n50.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 6553 2024-11-05 02:40:01.000000 ./usr/lib/hinge/condense_graph_with_gt.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 1689 2024-11-05 02:40:01.000000 ./usr/lib/hinge/connected.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1717 2024-11-05 02:40:05.000000 ./usr/lib/hinge/Visualise_graph.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1818 2024-11-05 02:40:05.000000 ./usr/lib/hinge/add_groundtruth.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 1496 2024-11-05 02:40:05.000000 ./usr/lib/hinge/add_groundtruth_json.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 946 2024-11-05 02:40:05.000000 ./usr/lib/hinge/clip_ends.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 2614 2024-11-05 02:40:05.000000 ./usr/lib/hinge/compute_n50_from_draft.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 5482 2024-11-05 02:40:05.000000 ./usr/lib/hinge/condense_graph.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 6886 2024-11-05 02:40:05.000000 ./usr/lib/hinge/condense_graph_and_annotate.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 8841 2024-11-05 02:40:05.000000 ./usr/lib/hinge/condense_graph_annotate_clip_ends.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 7179 2024-11-05 02:40:05.000000 ./usr/lib/hinge/condense_graph_create_gfa_compute_n50.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 6553 2024-11-05 02:40:05.000000 ./usr/lib/hinge/condense_graph_with_gt.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1689 2024-11-05 02:40:05.000000 ./usr/lib/hinge/connected.py │ │ │ -rwxr-xr-x 0 root (0) root (0) 178504 2024-11-05 02:40:05.000000 ./usr/lib/hinge/consensus │ │ │ --rwxr-xr-x 0 root (0) root (0) 1237 2024-11-05 02:40:01.000000 ./usr/lib/hinge/correct_head.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 808 2024-11-05 02:40:01.000000 ./usr/lib/hinge/create_bandage_file.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 1835 2024-11-05 02:40:01.000000 ./usr/lib/hinge/create_hgraph.py │ │ │ --rw-r--r-- 0 root (0) root (0) 874 2024-11-05 02:40:01.000000 ./usr/lib/hinge/create_hgraph_nogt.py │ │ │ --rw-r--r-- 0 root (0) root (0) 1252 2024-11-05 02:40:01.000000 ./usr/lib/hinge/download_NCTC_pipeline.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1237 2024-11-05 02:40:05.000000 ./usr/lib/hinge/correct_head.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 808 2024-11-05 02:40:05.000000 ./usr/lib/hinge/create_bandage_file.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1835 2024-11-05 02:40:05.000000 ./usr/lib/hinge/create_hgraph.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 874 2024-11-05 02:40:05.000000 ./usr/lib/hinge/create_hgraph_nogt.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 1252 2024-11-05 02:40:05.000000 ./usr/lib/hinge/download_NCTC_pipeline.py │ │ │ -rwxr-xr-x 0 root (0) root (0) 510472 2024-11-05 02:40:05.000000 ./usr/lib/hinge/draft_assembly │ │ │ --rwxr-xr-x 0 root (0) root (0) 864 2024-11-05 02:40:01.000000 ./usr/lib/hinge/draft_assembly.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 864 2024-11-05 02:40:01.000000 ./usr/lib/hinge/draft_assembly_not_perfect.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 5893 2024-11-05 02:40:01.000000 ./usr/lib/hinge/draw2.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 4505 2024-11-05 02:40:01.000000 ./usr/lib/hinge/draw2_pileup.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 4326 2024-11-05 02:40:01.000000 ./usr/lib/hinge/draw2_pileup_region.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 5603 2024-11-05 02:40:01.000000 ./usr/lib/hinge/draw2_pileup_w_repeat.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 4936 2024-11-05 02:40:01.000000 ./usr/lib/hinge/draw_pileup_region.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 4984 2024-11-05 02:40:01.000000 ./usr/lib/hinge/draw_pileup_region_find_bridges.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 454 2024-11-05 02:40:01.000000 ./usr/lib/hinge/fasta_to_fastq.py │ │ │ --rw-r--r-- 0 root (0) root (0) 1906 2024-11-05 02:40:01.000000 ./usr/lib/hinge/get_NCTC_json.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 2778 2024-11-05 02:40:01.000000 ./usr/lib/hinge/get_consensus_gfa.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 13759 2024-11-05 02:40:01.000000 ./usr/lib/hinge/get_draft_annotation.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 15149 2024-11-05 02:40:01.000000 ./usr/lib/hinge/get_draft_path.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 387 2024-11-05 02:40:01.000000 ./usr/lib/hinge/get_draft_path_norevcomp.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 864 2024-11-05 02:40:05.000000 ./usr/lib/hinge/draft_assembly.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 864 2024-11-05 02:40:05.000000 ./usr/lib/hinge/draft_assembly_not_perfect.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 5893 2024-11-05 02:40:05.000000 ./usr/lib/hinge/draw2.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 4505 2024-11-05 02:40:05.000000 ./usr/lib/hinge/draw2_pileup.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 4326 2024-11-05 02:40:05.000000 ./usr/lib/hinge/draw2_pileup_region.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 5603 2024-11-05 02:40:05.000000 ./usr/lib/hinge/draw2_pileup_w_repeat.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 4936 2024-11-05 02:40:05.000000 ./usr/lib/hinge/draw_pileup_region.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 4984 2024-11-05 02:40:05.000000 ./usr/lib/hinge/draw_pileup_region_find_bridges.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 454 2024-11-05 02:40:05.000000 ./usr/lib/hinge/fasta_to_fastq.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 1906 2024-11-05 02:40:05.000000 ./usr/lib/hinge/get_NCTC_json.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 2778 2024-11-05 02:40:05.000000 ./usr/lib/hinge/get_consensus_gfa.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 13759 2024-11-05 02:40:05.000000 ./usr/lib/hinge/get_draft_annotation.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 15149 2024-11-05 02:40:05.000000 ./usr/lib/hinge/get_draft_path.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 387 2024-11-05 02:40:05.000000 ./usr/lib/hinge/get_draft_path_norevcomp.py │ │ │ -rwxr-xr-x 0 root (0) root (0) 481800 2024-11-05 02:40:05.000000 ./usr/lib/hinge/get_maximal_reads │ │ │ --rw-r--r-- 0 root (0) root (0) 374 2024-11-05 02:40:01.000000 ./usr/lib/hinge/get_single_strand.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 374 2024-11-05 02:40:05.000000 ./usr/lib/hinge/get_single_strand.py │ │ │ -rwxr-xr-x 0 root (0) root (0) 518664 2024-11-05 02:40:05.000000 ./usr/lib/hinge/hinging │ │ │ --rwxr-xr-x 0 root (0) root (0) 3761 2024-11-05 02:40:01.000000 ./usr/lib/hinge/interface_utils.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 1482 2024-11-05 02:40:01.000000 ./usr/lib/hinge/longest_path.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 20778 2024-11-05 02:40:01.000000 ./usr/lib/hinge/merge_hinges.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 581 2024-11-05 02:40:01.000000 ./usr/lib/hinge/parallel_draw.sh │ │ │ --rwxr-xr-x 0 root (0) root (0) 392 2024-11-05 02:40:01.000000 ./usr/lib/hinge/parallel_draw_large.sh │ │ │ --rwxr-xr-x 0 root (0) root (0) 1284 2024-11-05 02:40:01.000000 ./usr/lib/hinge/parse.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 760 2024-11-05 02:40:01.000000 ./usr/lib/hinge/parse_alignment.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 314 2024-11-05 02:40:01.000000 ./usr/lib/hinge/parse_qv.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 658 2024-11-05 02:40:01.000000 ./usr/lib/hinge/parse_read.py │ │ │ --rw-r--r-- 0 root (0) root (0) 17344 2024-11-05 02:40:01.000000 ./usr/lib/hinge/pileup.ipynb │ │ │ --rwxr-xr-x 0 root (0) root (0) 3373 2024-11-05 02:40:01.000000 ./usr/lib/hinge/pipeline_consensus.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 3175 2024-11-05 02:40:01.000000 ./usr/lib/hinge/pipeline_consensus_norevcomp.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 2547 2024-11-05 02:40:01.000000 ./usr/lib/hinge/pipeline_nctc.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 47783 2024-11-05 02:40:01.000000 ./usr/lib/hinge/pruning_and_clipping.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 42386 2024-11-05 02:40:01.000000 ./usr/lib/hinge/pruning_and_clipping_nanopore.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 9335 2024-11-05 02:40:01.000000 ./usr/lib/hinge/random_condensation.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 3521 2024-11-05 02:40:01.000000 ./usr/lib/hinge/repeat_annotate_reads.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 1127 2024-11-05 02:40:01.000000 ./usr/lib/hinge/run_mapping.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 1401 2024-11-05 02:40:01.000000 ./usr/lib/hinge/run_mapping2.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 1404 2024-11-05 02:40:01.000000 ./usr/lib/hinge/run_mapping3.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 406 2024-11-05 02:40:01.000000 ./usr/lib/hinge/run_parse_alignment.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 355 2024-11-05 02:40:01.000000 ./usr/lib/hinge/run_parse_read.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 634 2024-11-05 02:40:01.000000 ./usr/lib/hinge/split_las.py │ │ │ --rwxr-xr-x 0 root (0) root (0) 4107 2024-11-05 02:40:01.000000 ./usr/lib/hinge/unitig.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 3761 2024-11-05 02:40:05.000000 ./usr/lib/hinge/interface_utils.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1482 2024-11-05 02:40:05.000000 ./usr/lib/hinge/longest_path.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 20778 2024-11-05 02:40:05.000000 ./usr/lib/hinge/merge_hinges.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 581 2024-11-05 02:40:05.000000 ./usr/lib/hinge/parallel_draw.sh │ │ │ +-rwxr-xr-x 0 root (0) root (0) 392 2024-11-05 02:40:05.000000 ./usr/lib/hinge/parallel_draw_large.sh │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1284 2024-11-05 02:40:05.000000 ./usr/lib/hinge/parse.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 760 2024-11-05 02:40:05.000000 ./usr/lib/hinge/parse_alignment.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 314 2024-11-05 02:40:05.000000 ./usr/lib/hinge/parse_qv.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 658 2024-11-05 02:40:05.000000 ./usr/lib/hinge/parse_read.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 17344 2024-11-05 02:40:05.000000 ./usr/lib/hinge/pileup.ipynb │ │ │ +-rwxr-xr-x 0 root (0) root (0) 3373 2024-11-05 02:40:05.000000 ./usr/lib/hinge/pipeline_consensus.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 3175 2024-11-05 02:40:05.000000 ./usr/lib/hinge/pipeline_consensus_norevcomp.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 2547 2024-11-05 02:40:05.000000 ./usr/lib/hinge/pipeline_nctc.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 47783 2024-11-05 02:40:05.000000 ./usr/lib/hinge/pruning_and_clipping.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 42386 2024-11-05 02:40:05.000000 ./usr/lib/hinge/pruning_and_clipping_nanopore.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 9335 2024-11-05 02:40:05.000000 ./usr/lib/hinge/random_condensation.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 3521 2024-11-05 02:40:05.000000 ./usr/lib/hinge/repeat_annotate_reads.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1127 2024-11-05 02:40:05.000000 ./usr/lib/hinge/run_mapping.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1401 2024-11-05 02:40:05.000000 ./usr/lib/hinge/run_mapping2.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 1404 2024-11-05 02:40:05.000000 ./usr/lib/hinge/run_mapping3.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 406 2024-11-05 02:40:05.000000 ./usr/lib/hinge/run_parse_alignment.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 355 2024-11-05 02:40:05.000000 ./usr/lib/hinge/run_parse_read.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 634 2024-11-05 02:40:05.000000 ./usr/lib/hinge/split_las.py │ │ │ +-rwxr-xr-x 0 root (0) root (0) 4107 2024-11-05 02:40:05.000000 ./usr/lib/hinge/unitig.py │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-11-05 02:40:05.000000 ./usr/share/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-11-05 02:40:05.000000 ./usr/share/doc/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-11-05 02:40:05.000000 ./usr/share/doc/hinge/ │ │ │ --rw-r--r-- 0 root (0) root (0) 2605 2024-11-05 02:40:01.000000 ./usr/share/doc/hinge/README.md.gz │ │ │ +-rw-r--r-- 0 root (0) root (0) 2605 2024-11-05 02:40:05.000000 ./usr/share/doc/hinge/README.md.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 778 2024-11-05 02:40:05.000000 ./usr/share/doc/hinge/changelog.Debian.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 217 2024-11-05 02:40:05.000000 ./usr/share/doc/hinge/changelog.Debian.riscv64.gz │ │ │ -rw-r--r-- 0 root (0) root (0) 8116 2021-12-22 07:21:12.000000 ./usr/share/doc/hinge/copyright │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2024-11-05 02:40:05.000000 ./usr/share/doc/hinge/examples/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2017-08-13 23:05:39.000000 ./usr/share/doc/hinge/examples/demo/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2017-08-13 23:05:39.000000 ./usr/share/doc/hinge/examples/demo/NCTC9657_demo/ │ │ │ -rw-r--r-- 0 root (0) root (0) 1189 2017-08-13 23:05:39.000000 ./usr/share/doc/hinge/examples/demo/NCTC9657_demo/run.sh