+ dirname /tmp/rebuilderddaPY3x/inputs/bedops_2.4.41+dfsg-3_riscv64.buildinfo + cd /tmp/rebuilderddaPY3x/inputs + mkdir -p etc/apt + mkdir -p var/lib/apt/lists/ + export TMPDIR=/srv/rebuilderd/tmp + mkdir -p /srv/rebuilderd/tmp + chmod 777 /srv/rebuilderd/tmp + echo deb-src [signed-by=/usr/share/keyrings/debian-archive-keyring.gpg] https://deb.debian.org/debian trixie main + apt-get -o Dir=. update Get:1 https://deb.debian.org/debian trixie InRelease [175 kB] Get:2 https://deb.debian.org/debian trixie/main Sources [10.3 MB] Fetched 10.5 MB in 10s (1045 kB/s) Reading package lists... + + basename /tmp/rebuilderddaPY3x/inputs/bedops_2.4.41+dfsg-3_riscv64.buildinfo cut -d_ -f1 + apt-get -o Dir=. source --download-only bedops Reading package lists... NOTICE: 'bedops' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bedops.git Please use: git clone https://salsa.debian.org/med-team/bedops.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 13.5 MB of source archives. Get:1 https://deb.debian.org/debian trixie/main bedops 2.4.41+dfsg-3 (dsc) [2227 B] Get:2 https://deb.debian.org/debian trixie/main bedops 2.4.41+dfsg-3 (tar) [13.5 MB] Get:3 https://deb.debian.org/debian trixie/main bedops 2.4.41+dfsg-3 (diff) [10.9 kB] Fetched 13.5 MB in 5s (2968 kB/s) Download complete and in download only mode + nice /usr/bin/debrebuild --buildresult=/tmp/rebuilderddaPY3x/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /tmp/rebuilderddaPY3x/inputs/bedops_2.4.41+dfsg-3_riscv64.buildinfo /tmp/rebuilderddaPY3x/inputs/bedops_2.4.41+dfsg-3_riscv64.buildinfo containes a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/bedops-2.4.41+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid InRelease [202 kB] Get:2 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 Packages [9681 kB] Fetched 9883 kB in 17s (584 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20241218T083657Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 gzip riscv64 1.12-1.2 [134 kB] Fetched 134 kB in 0s (2149 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0oxfhoxg/gzip_1.12-1.2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 mawk riscv64 1.3.4.20240905-1 [139 kB] Fetched 139 kB in 0s (2188 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmploc9jjm7/mawk_1.3.4.20240905-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 sed riscv64 4.9-2 [329 kB] Fetched 329 kB in 0s (4466 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2xi3xrwr/sed_4.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 g++-14 riscv64 14.2.0-9 [20.4 kB] Fetched 20.4 kB in 0s (339 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx2rie8yh/g++-14_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 perl riscv64 5.40.0-8 [267 kB] Fetched 267 kB in 0s (3882 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp84kpb7ja/perl_5.40.0-8_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 gettext riscv64 0.22.5-3 [1599 kB] Fetched 1599 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_gnkpbze/gettext_0.22.5-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libgcc-14-dev riscv64 14.2.0-9 [5189 kB] Fetched 5189 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp36rj0z7c/libgcc-14-dev_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 hostname riscv64 3.25 [10.7 kB] Fetched 10.7 kB in 0s (192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu2lkrped/hostname_3.25_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libpam0g riscv64 1.5.3-7+b1 [68.6 kB] Fetched 68.6 kB in 0s (1177 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7aqm6j5t/libpam0g_1.5.3-7+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 groff-base riscv64 1.23.0-6 [1164 kB] Fetched 1164 kB in 0s (9407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi5lloy5j/groff-base_1.23.0-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libc6 riscv64 2.40-4 [2430 kB] Fetched 2430 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp62_cbjmb/libc6_2.40-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 gcc riscv64 4:14.2.0-1 [5132 B] Fetched 5132 B in 0s (91.4 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpvyece3xh/gcc_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 automake all 1:1.16.5-1.3 [823 kB] Fetched 823 kB in 0s (7645 kB/s) dpkg-name: info: moved 'automake_1%3a1.16.5-1.3_all.deb' to '/srv/rebuilderd/tmp/tmpgq5oi941/automake_1.16.5-1.3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libpam-runtime all 1.5.3-7 [140 kB] Fetched 140 kB in 0s (2197 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1hnibkn1/libpam-runtime_1.5.3-7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (3611 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1xp3hvqs/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 g++ riscv64 4:14.2.0-1 [1328 B] Fetched 1328 B in 0s (24.5 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpe39owt49/g++_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libssl3t64 riscv64 3.3.2-2 [2060 kB] Fetched 2060 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0dhnttg/libssl3t64_3.3.2-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 file riscv64 1:5.45-3+b1 [43.1 kB] Fetched 43.1 kB in 0s (748 kB/s) dpkg-name: info: moved 'file_1%3a5.45-3+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpai5240p0/file_5.45-3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libblkid1 riscv64 2.40.2-12 [190 kB] Fetched 190 kB in 0s (2936 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn5vs14dr/libblkid1_2.40.2-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libc-dev-bin riscv64 2.40-4 [51.2 kB] Fetched 51.2 kB in 0s (874 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8okeakzm/libc-dev-bin_2.40-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-3 [558 kB] Fetched 558 kB in 0s (6466 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmp2fkgb96v/libgmp10_6.3.0+dfsg-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libmpfr6 riscv64 4.2.1-1+b2 [659 kB] Fetched 659 kB in 0s (7073 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm5svv_bj/libmpfr6_4.2.1-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libgcc-s1 riscv64 14.2.0-9 [56.7 kB] Fetched 56.7 kB in 0s (981 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_bux3d1d/libgcc-s1_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 base-passwd riscv64 3.6.5 [53.2 kB] Fetched 53.2 kB in 0s (905 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnnr6e36g/base-passwd_3.6.5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 ncurses-bin riscv64 6.5-2+b1 [432 kB] Fetched 432 kB in 0s (5535 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvah7dbkt/ncurses-bin_6.5-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 g++-riscv64-linux-gnu riscv64 4:14.2.0-1 [1196 B] Fetched 1196 B in 0s (21.8 kB/s) dpkg-name: info: moved 'g++-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpk0ytiwdv/g++-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libcrypt-dev riscv64 1:4.4.36-5 [221 kB] Fetched 221 kB in 0s (3300 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.36-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpw_w0e2nf/libcrypt-dev_4.4.36-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libc-bin riscv64 2.40-4 [596 kB] Fetched 596 kB in 0s (6722 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpne91er2t/libc-bin_2.40-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 linux-libc-dev all 6.12.3-1 [2459 kB] Fetched 2459 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn681prmu/linux-libc-dev_6.12.3-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libgdbm-compat4t64 riscv64 1.24-2 [50.5 kB] Fetched 50.5 kB in 0s (876 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplp5y278q/libgdbm-compat4t64_1.24-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Fetched 8448 B in 0s (155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt1bk4spj/dh-strip-nondeterminism_1.14.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libctf0 riscv64 2.43.50.20241215-1 [96.0 kB] Fetched 96.0 kB in 0s (1592 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt7id5v4e/libctf0_2.43.50.20241215-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libsframe1 riscv64 2.43.50.20241215-1 [78.3 kB] Fetched 78.3 kB in 0s (1325 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_vh2dgl1/libsframe1_2.43.50.20241215-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libtsan2 riscv64 14.2.0-9 [2243 kB] Fetched 2243 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm1a38vb_/libtsan2_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 dash riscv64 0.5.12-9 [95.9 kB] Fetched 95.9 kB in 0s (1618 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph2q44roo/dash_0.5.12-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 gcc-14-base riscv64 14.2.0-9 [47.6 kB] Fetched 47.6 kB in 0s (843 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphqss9yfm/gcc-14-base_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 gettext-base riscv64 0.22.5-3 [199 kB] Fetched 199 kB in 0s (2971 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwmhtjaqq/gettext-base_0.22.5-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libctf-nobfd0 riscv64 2.43.50.20241215-1 [163 kB] Fetched 163 kB in 0s (2527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgxswwr1t/libctf-nobfd0_2.43.50.20241215-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libsystemd0 riscv64 257-2 [464 kB] Fetched 464 kB in 0s (5779 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmple_770f3/libsystemd0_257-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libmagic1t64 riscv64 1:5.45-3+b1 [115 kB] Fetched 115 kB in 0s (1878 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.45-3+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpumqpc6ts/libmagic1t64_5.45-3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libcap-ng0 riscv64 0.8.5-4 [16.9 kB] Fetched 16.9 kB in 0s (305 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaprntli_/libcap-ng0_0.8.5-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 ncurses-base all 6.5-2 [270 kB] Fetched 270 kB in 0s (3905 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps7xvnd76/ncurses-base_6.5-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 gcc-14-riscv64-linux-gnu riscv64 14.2.0-9 [27.1 MB] Fetched 27.1 MB in 2s (17.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxl633lqe/gcc-14-riscv64-linux-gnu_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 build-essential riscv64 12.12 [4628 B] Fetched 4628 B in 0s (83.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp58hpk87b/build-essential_12.12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (305 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw162dv1e/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libdebhelper-perl all 13.21 [88.9 kB] Fetched 88.9 kB in 4s (24.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpny9p0ccu/libdebhelper-perl_13.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 dpkg riscv64 1.22.11 [1535 kB] Fetched 1535 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc4xfprzu/dpkg_1.22.11_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libmpc3 riscv64 1.3.1-1+b3 [56.7 kB] Fetched 56.7 kB in 0s (987 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptkz1a4p5/libmpc3_1.3.1-1+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 binutils riscv64 2.43.50.20241215-1 [68.2 kB] Fetched 68.2 kB in 0s (1152 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp22afjhwj/binutils_2.43.50.20241215-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 cpp riscv64 4:14.2.0-1 [1576 B] Fetched 1576 B in 0s (28.3 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpdx33od9j/cpp_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libubsan1 riscv64 14.2.0-9 [980 kB] Fetched 980 kB in 0s (8973 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpusvypv6c/libubsan1_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 man-db riscv64 2.13.0-1 [1407 kB] Fetched 1407 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj4lvjlvo/man-db_2.13.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 bash riscv64 5.2.37-1 [1504 kB] Fetched 1504 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpii0cgs51/bash_5.2.37-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 autoconf all 2.72-3 [493 kB] Fetched 493 kB in 0s (5846 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_g274e5u/autoconf_2.72-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libstdc++6 riscv64 14.2.0-9 [707 kB] Fetched 707 kB in 0s (7455 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps3h39en6/libstdc++6_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libzstd1 riscv64 1.5.6+dfsg-1+b1 [355 kB] Fetched 355 kB in 0s (4667 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9gzqhn70/libzstd1_1.5.6+dfsg-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libtool all 2.4.7-8 [517 kB] Fetched 517 kB in 0s (5857 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfgj1fjac/libtool_2.4.7-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libmagic-mgc riscv64 1:5.45-3+b1 [314 kB] Fetched 314 kB in 0s (4343 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.45-3+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmptzzdcp7o/libmagic-mgc_5.45-3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libselinux1 riscv64 3.7-3+b1 [80.0 kB] Fetched 80.0 kB in 0s (1312 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5up1b4hl/libselinux1_3.7-3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 cpp-14 riscv64 14.2.0-9 [1276 B] Fetched 1276 B in 0s (22.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0bigrz5f/cpp-14_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 liblocale-gettext-perl riscv64 1.07-7+b1 [15.2 kB] Fetched 15.2 kB in 0s (277 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn1vdc3ha/liblocale-gettext-perl_1.07-7+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 tcsh riscv64 6.24.13-2 [467 kB] Fetched 467 kB in 5s (92.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdxd8ppz1/tcsh_6.24.13-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 perl-base riscv64 5.40.0-8 [1670 kB] Fetched 1670 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj_2z8h9k/perl-base_5.40.0-8_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 xz-utils riscv64 5.6.3-1+b1 [542 kB] Fetched 542 kB in 0s (6298 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm1_sinsk/xz-utils_5.6.3-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libgomp1 riscv64 14.2.0-9 [131 kB] Fetched 131 kB in 0s (2106 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmlua9glt/libgomp1_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 g++-14-riscv64-linux-gnu riscv64 14.2.0-9 [15.0 MB] Fetched 15.0 MB in 1s (17.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpureyjypp/g++-14-riscv64-linux-gnu_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 make riscv64 4.3-4.1+b2 [382 kB] Fetched 382 kB in 0s (5038 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphxrn56tt/make_4.3-4.1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libudev1 riscv64 257-2 [149 kB] Fetched 149 kB in 0s (2342 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf5h5gd5j/libudev1_257-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libunistring5 riscv64 1.3-1 [474 kB] Fetched 474 kB in 0s (5814 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv4vatktf/libunistring5_1.3-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Fetched 19.5 kB in 0s (349 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjdj3ijzz/libfile-stripnondeterminism-perl_1.14.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libstdc++-14-dev riscv64 14.2.0-9 [5243 kB] Fetched 5243 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjovtt1_a/libstdc++-14-dev_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 util-linux riscv64 2.40.2-12 [1207 kB] Fetched 1207 kB in 0s (9783 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ifobvhf/util-linux_2.40.2-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libbinutils riscv64 2.43.50.20241215-1 [518 kB] Fetched 518 kB in 0s (6191 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpruxzkmpd/libbinutils_2.43.50.20241215-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libitm1 riscv64 14.2.0-9 [25.8 kB] Fetched 25.8 kB in 0s (458 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpldj6zrvp/libitm1_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (407 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw_be6ch1/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 gcc-14 riscv64 14.2.0-9 [522 kB] Fetched 522 kB in 0s (6101 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp13jqcgrt/gcc-14_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (1686 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc4_mmxbo/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libdebconfclient0 riscv64 0.274 [9996 B] Fetched 9996 B in 0s (178 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuesfhsla/libdebconfclient0_0.274_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 base-files riscv64 13.6 [72.9 kB] Fetched 72.9 kB in 0s (1246 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppagzkrdd/base-files_13.6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libgdbm6t64 riscv64 1.24-2 [75.9 kB] Fetched 75.9 kB in 0s (1040 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprqk8trul/libgdbm6t64_1.24-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libcrypt1 riscv64 1:4.4.36-5 [105 kB] Fetched 105 kB in 0s (1765 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.36-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpuw6vtknq/libcrypt1_4.4.36-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libpcre2-8-0 riscv64 10.44-5 [281 kB] Fetched 281 kB in 0s (3964 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplqp1gqvz/libpcre2-8-0_10.44-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libatomic1 riscv64 14.2.0-9 [8616 B] Fetched 8616 B in 0s (157 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprzilaow4/libatomic1_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libpipeline1 riscv64 1.5.8-1 [40.3 kB] Fetched 40.3 kB in 0s (706 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpflh5jjs6/libpipeline1_1.5.8-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 dpkg-dev all 1.22.11 [1332 kB] Fetched 1332 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpko0xh4fe/dpkg-dev_1.22.11_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 rpcsvc-proto riscv64 1.4.3-1+b2 [62.3 kB] Fetched 62.3 kB in 0s (1066 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprglo5h6e/rpcsvc-proto_1.4.3-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 bzip2 riscv64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (720 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps_il4ugw/bzip2_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 debianutils riscv64 5.21 [91.5 kB] Fetched 91.5 kB in 0s (1545 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy8o2lg0a/debianutils_5.21_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libtinfo6 riscv64 6.5-2+b1 [343 kB] Fetched 343 kB in 0s (4686 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp475oefk5/libtinfo6_6.5-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 findutils riscv64 4.10.0-3 [706 kB] Fetched 706 kB in 0s (7612 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjm486wl5/findutils_4.10.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libacl1 riscv64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (584 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcorshqb6/libacl1_2.3.2-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libaudit-common all 1:4.0.2-2 [12.7 kB] Fetched 12.7 kB in 0s (224 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpmjuye9kp/libaudit-common_4.0.2-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 cpp-14-riscv64-linux-gnu riscv64 14.2.0-9 [14.0 MB] Fetched 14.0 MB in 1s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplb3tyzy3/cpp-14-riscv64-linux-gnu_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 autopoint all 0.22.5-3 [723 kB] Fetched 723 kB in 0s (7654 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq8nsazl2/autopoint_0.22.5-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libuuid1 riscv64 2.40.2-12 [38.2 kB] Fetched 38.2 kB in 0s (656 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpilvlmy7p/libuuid1_2.40.2-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libmd0 riscv64 1.1.0-2+b1 [37.6 kB] Fetched 37.6 kB in 0s (664 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy09xm95q/libmd0_1.1.0-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libxml2 riscv64 2.12.7+dfsg+really2.9.14-0.2+b1 [709 kB] Fetched 709 kB in 0s (7546 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpho70f35z/libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 liblzma5 riscv64 5.6.3-1+b1 [277 kB] Fetched 277 kB in 0s (3934 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpienocmyj/liblzma5_5.6.3-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 openssl-provider-legacy riscv64 3.3.2-2 [299 kB] Fetched 299 kB in 0s (4139 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmply7smy_k/openssl-provider-legacy_3.3.2-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 binutils-common riscv64 2.43.50.20241215-1 [2504 kB] Fetched 2504 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe6ghjw85/binutils-common_2.43.50.20241215-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 grep riscv64 3.11-4 [430 kB] Fetched 430 kB in 0s (5333 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3knt6cs/grep_3.11-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libsmartcols1 riscv64 2.40.2-12 [152 kB] Fetched 152 kB in 0s (2304 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpntt1u0wc/libsmartcols1_2.40.2-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libuchardet0 riscv64 0.0.8-1+b2 [68.8 kB] Fetched 68.8 kB in 0s (1155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpspgfjo3q/libuchardet0_0.0.8-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 dwz riscv64 0.15-1+b3 [114 kB] Fetched 114 kB in 0s (1829 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6hx0g1la/dwz_0.15-1+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 tar riscv64 1.35+dfsg-3 [819 kB] Fetched 819 kB in 0s (7995 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfj4sp1zs/tar_1.35+dfsg-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libperl5.40 riscv64 5.40.0-8 [3942 kB] Fetched 3942 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphrloik2e/libperl5.40_5.40.0-8_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libattr1 riscv64 1:2.5.2-2 [22.8 kB] Fetched 22.8 kB in 0s (403 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-2_riscv64.deb' to '/srv/rebuilderd/tmp/tmpc3q1hmof/libattr1_2.5.2-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 sensible-utils all 0.0.24 [24.8 kB] Fetched 24.8 kB in 0s (450 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplnjiatub/sensible-utils_0.0.24_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 init-system-helpers all 1.67 [38.7 kB] Fetched 38.7 kB in 0s (680 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqa7b5m94/init-system-helpers_1.67_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libisl23 riscv64 0.27-1 [664 kB] Fetched 664 kB in 0s (7356 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpllpq5aho/libisl23_0.27-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libelf1t64 riscv64 0.192-4 [194 kB] Fetched 194 kB in 0s (2900 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiqmsukg0/libelf1t64_0.192-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 usr-is-merged all 39 [5572 B] Fetched 5572 B in 0s (103 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc8gju7vb/usr-is-merged_39_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 coreutils riscv64 9.5-1 [2939 kB] Fetched 2939 kB in 0s (13.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvh4a763r/coreutils_9.5-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libbz2-1.0 riscv64 1.0.8-6 [40.3 kB] Fetched 40.3 kB in 0s (695 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp987r2s64/libbz2-1.0_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 binutils-riscv64-linux-gnu riscv64 2.43.50.20241215-1 [1027 kB] Fetched 1027 kB in 0s (9218 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph6n8i3ef/binutils-riscv64-linux-gnu_2.43.50.20241215-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libdpkg-perl all 1.22.11 [644 kB] Fetched 644 kB in 0s (7013 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg0i8cpqm/libdpkg-perl_1.22.11_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 debconf all 1.5.87 [119 kB] Fetched 119 kB in 0s (1911 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3mdxaej8/debconf_1.5.87_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libasan8 riscv64 14.2.0-9 [2366 kB] Fetched 2366 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcu2kljxs/libasan8_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Fetched 85.7 kB in 0s (1416 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpqfioo9b9/zlib1g_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libicu72 riscv64 72.1-5+b1 [9391 kB] Fetched 9391 kB in 1s (16.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9cvhzty0/libicu72_72.1-5+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 debhelper all 13.21 [919 kB] Fetched 919 kB in 5s (170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqs_0o_hu/debhelper_13.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libjansson-dev riscv64 2.14-2+b3 [87.6 kB] Fetched 87.6 kB in 4s (20.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4r6zpve1/libjansson-dev_2.14-2+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libgprofng0 riscv64 2.43.50.20241215-1 [719 kB] Fetched 719 kB in 0s (7676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphvkbwf8q/libgprofng0_2.43.50.20241215-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-9 [716 kB] Fetched 716 kB in 0s (7505 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv7a4bmoi/libdb5.3t64_5.3.28+dfsg2-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 help2man riscv64 1.49.3+b1 [198 kB] Fetched 198 kB in 0s (3001 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbly9nds7/help2man_1.49.3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 sysvinit-utils riscv64 3.11-1 [32.7 kB] Fetched 32.7 kB in 0s (575 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuyjaq5w1/sysvinit-utils_3.11-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libcc1-0 riscv64 14.2.0-9 [40.2 kB] Fetched 40.2 kB in 0s (715 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp01msl28c/libcc1-0_14.2.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 bsdextrautils riscv64 2.40.2-12 [95.7 kB] Fetched 95.7 kB in 0s (1578 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuxcvas6z/bsdextrautils_2.40.2-12_riscv64.deb' Downloading dependency 1 of 146: gzip:riscv64=1.12-1.2 Downloading dependency 2 of 146: mawk:riscv64=1.3.4.20240905-1 Downloading dependency 3 of 146: sed:riscv64=4.9-2 Downloading dependency 4 of 146: g++-14:riscv64=14.2.0-9 Downloading dependency 5 of 146: perl:riscv64=5.40.0-8 Downloading dependency 6 of 146: gettext:riscv64=0.22.5-3 Downloading dependency 7 of 146: libgcc-14-dev:riscv64=14.2.0-9 Downloading dependency 8 of 146: hostname:riscv64=3.25 Downloading dependency 9 of 146: libpam0g:riscv64=1.5.3-7+b1 Downloading dependency 10 of 146: groff-base:riscv64=1.23.0-6 Downloading dependency 11 of 146: libc6:riscv64=2.40-4 Downloading dependency 12 of 146: gcc:riscv64=4:14.2.0-1 Downloading dependency 13 of 146: automake:riscv64=1:1.16.5-1.3 Downloading dependency 14 of 146: libpam-runtime:riscv64=1.5.3-7 Downloading dependency 15 of 146: po-debconf:riscv64=1.0.21+nmu1 Downloading dependency 16 of 146: g++:riscv64=4:14.2.0-1 Downloading dependency 17 of 146: libssl3t64:riscv64=3.3.2-2 Downloading dependency 18 of 146: file:riscv64=1:5.45-3+b1 Downloading dependency 19 of 146: libblkid1:riscv64=2.40.2-12 Downloading dependency 20 of 146: 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dash:riscv64=0.5.12-9 Downloading dependency 36 of 146: gcc-14-base:riscv64=14.2.0-9 Downloading dependency 37 of 146: gettext-base:riscv64=0.22.5-3 Downloading dependency 38 of 146: libctf-nobfd0:riscv64=2.43.50.20241215-1 Downloading dependency 39 of 146: libsystemd0:riscv64=257-2 Downloading dependency 40 of 146: libmagic1t64:riscv64=1:5.45-3+b1 Downloading dependency 41 of 146: libcap-ng0:riscv64=0.8.5-4 Downloading dependency 42 of 146: ncurses-base:riscv64=6.5-2 Downloading dependency 43 of 146: gcc-14-riscv64-linux-gnu:riscv64=14.2.0-9 Downloading dependency 44 of 146: build-essential:riscv64=12.12 Downloading dependency 45 of 146: dh-autoreconf:riscv64=20 Downloading dependency 46 of 146: libdebhelper-perl:riscv64=13.21 Downloading dependency 47 of 146: dpkg:riscv64=1.22.11 Downloading dependency 48 of 146: libmpc3:riscv64=1.3.1-1+b3 Downloading dependency 49 of 146: binutils:riscv64=2.43.50.20241215-1 Downloading dependency 50 of 146: cpp:riscv64=4:14.2.0-1 Downloading dependency 51 of 146: libubsan1:riscv64=14.2.0-9 Downloading dependency 52 of 146: man-db:riscv64=2.13.0-1 Downloading dependency 53 of 146: bash:riscv64=5.2.37-1 Downloading dependency 54 of 146: autoconf:riscv64=2.72-3 Downloading dependency 55 of 146: libstdc++6:riscv64=14.2.0-9 Downloading dependency 56 of 146: libzstd1:riscv64=1.5.6+dfsg-1+b1 Downloading dependency 57 of 146: libtool:riscv64=2.4.7-8 Downloading dependency 58 of 146: libmagic-mgc:riscv64=1:5.45-3+b1 Downloading dependency 59 of 146: libselinux1:riscv64=3.7-3+b1 Downloading dependency 60 of 146: cpp-14:riscv64=14.2.0-9 Downloading dependency 61 of 146: liblocale-gettext-perl:riscv64=1.07-7+b1 Downloading dependency 62 of 146: tcsh:riscv64=6.24.13-2 Downloading dependency 63 of 146: perl-base:riscv64=5.40.0-8 Downloading dependency 64 of 146: xz-utils:riscv64=5.6.3-1+b1 Downloading dependency 65 of 146: libgomp1:riscv64=14.2.0-9 Downloading dependency 66 of 146: g++-14-riscv64-linux-gnu:riscv64=14.2.0-9 Downloading dependency 67 of 146: make:riscv64=4.3-4.1+b2 Downloading dependency 68 of 146: libudev1:riscv64=257-2 Downloading dependency 69 of 146: libunistring5:riscv64=1.3-1 Downloading dependency 70 of 146: libfile-stripnondeterminism-perl:riscv64=1.14.0-1 Downloading dependency 71 of 146: libstdc++-14-dev:riscv64=14.2.0-9 Downloading dependency 72 of 146: util-linux:riscv64=2.40.2-12 Downloading dependency 73 of 146: libbinutils:riscv64=2.43.50.20241215-1 Downloading dependency 74 of 146: libitm1:riscv64=14.2.0-9 Downloading dependency 75 of 146: intltool-debian:riscv64=0.35.0+20060710.6 Downloading dependency 76 of 146: gcc-14:riscv64=14.2.0-9 Downloading dependency 77 of 146: libarchive-zip-perl:riscv64=1.68-1 Downloading dependency 78 of 146: libdebconfclient0:riscv64=0.274 Downloading dependency 79 of 146: base-files:riscv64=13.6 Downloading dependency 80 of 146: libgdbm6t64:riscv64=1.24-2 Downloading dependency 81 of 146: libcrypt1:riscv64=1:4.4.36-5 Downloading dependency 82 of 146: libpcre2-8-0:riscv64=10.44-5 Downloading dependency 83 of 146: libatomic1:riscv64=14.2.0-9 Downloading dependency 84 of 146: libpipeline1:riscv64=1.5.8-1 Downloading dependency 85 of 146: dpkg-dev:riscv64=1.22.11 Downloading dependency 86 of 146: rpcsvc-proto:riscv64=1.4.3-1+b2 Downloading dependency 87 of 146: bzip2:riscv64=1.0.8-6 Downloading dependency 88 of 146: debianutils:riscv64=5.21 Downloading dependency 89 of 146: libtinfo6:riscv64=6.5-2+b1 Downloading dependency 90 of 146: findutils:riscv64=4.10.0-3 Downloading dependency 91 of 146: libacl1:riscv64=2.3.2-2+b1 Downloading dependency 92 of 146: libaudit-common:riscv64=1:4.0.2-2 Downloading dependency 93 of 146: cpp-14-riscv64-linux-gnu:riscv64=14.2.0-9 Downloading dependency 94 of 146: autopoint:riscv64=0.22.5-3 Downloading dependency 95 of 146: libuuid1:riscv64=2.40.2-12 Downloading dependency 96 of 146: libmd0:riscv64=1.1.0-2+b1 Downloading dependency 97 of 146: libxml2:riscv64=2.12.7+dfsg+really2.9.14-0.2+b1 Downloading dependency 98 of 146: liblzma5:riscv64=5.6.3-1+b1 Downloading dependency 99 of 146: openssl-provider-legacy:riscv64=3.3.2-2 Downloading dependency 100 of 146: binutils-common:riscv64=2.43.50.20241215-1 Downloading dependency 101 of 146: grep:riscv64=3.11-4 Downloading dependency 102 of 146: libsmartcols1:riscv64=2.40.2-12 Downloading dependency 103 of 146: libuchardet0:riscv64=0.0.8-1+b2 Downloading dependency 104 of 146: dwz:riscv64=0.15-1+b3 Downloading dependency 105 of 146: tar:riscv64=1.35+dfsg-3 Downloading dependency 106 of 146: libperl5.40:riscv64=5.40.0-8 Downloading dependency 107 of 146: libattr1:riscv64=1:2.5.2-2 Downloading dependency 108 of 146: sensible-utils:riscv64=0.0.24 Downloading dependency 109 of 146: init-system-helpers:riscv64=1.67 Downloading dependency 110 of 146: libisl23:riscv64=0.27-1 Downloading dependency 111 of 146: libelf1t64:riscv64=0.192-4 Downloading dependency 112 of 146: usr-is-merged:riscv64=39 Downloading dependency 113 of 146: coreutils:riscv64=9.5-1 Downloading dependency 114 of 146: libbz2-1.0:riscv64=1.0.8-6 Downloading dependency 115 of 146: binutils-riscv64-linux-gnu:riscv64=2.43.50.20241215-1 Downloading dependency 116 of 146: libdpkg-perl:riscv64=1.22.11 Downloading dependency 117 of 146: debconf:riscv64=1.5.87 Downloading dependency 118 of 146: libasan8:riscv64=14.2.0-9 Downloading dependency 119 of 146: zlib1g:riscv64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 120 of 146: libicu72:riscv64=72.1-5+b1 Downloading dependency 121 of 146: debhelper:riscv64=13.21 Downloading dependency 122 of 146: libjansson-dev:riscv64=2.14-2+b3 Downloading dependency 123 of 146: libgprofng0:riscv64=2.43.50.20241215-1 Downloading dependency 124 of 146: libdb5.3t64:riscv64=5.3.28+dfsg2-9 Downloading dependency 125 of 146: help2man:riscv64=1.49.3+b1 Downloading dependency 126 of 146: sysvinit-utils:riscv64=3.11-1 Downloading dependency 127 of 146: libcc1-0:riscv64=14.2.0-9 Downloading dependency 128 of 146: bsdextrautils:riscv64=2.40.2-12 Downloading dependency 129 of 146: autotools-dev:riscv64=20220109.1Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 autotools-dev all 20220109.1 [51.6 kB] Fetched 51.6 kB in 0s (893 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1ydkniq/autotools-dev_20220109.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 cpp-riscv64-linux-gnu riscv64 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (86.6 kB/s) dpkg-name: info: moved 'cpp-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpdrk3yot6/cpp-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 perl-modules-5.40 all 5.40.0-8 [3015 kB] Fetched 3015 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ipj19fk/perl-modules-5.40_5.40.0-8_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libjansson4 riscv64 2.14-2+b3 [40.7 kB] Fetched 40.7 kB in 0s (720 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpie6ng6qm/libjansson4_2.14-2+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libc6-dev riscv64 2.40-4 [3088 kB] Fetched 3088 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl_er__tj/libc6-dev_2.40-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libpam-modules-bin riscv64 1.5.3-7+b1 [55.1 kB] Fetched 55.1 kB in 0s (940 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpat9b2br4/libpam-modules-bin_1.5.3-7+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libbz2-dev riscv64 1.0.8-6 [69.9 kB] Fetched 69.9 kB in 0s (1196 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkx7xi04b/libbz2-dev_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 patch riscv64 2.7.6-7+b2 [121 kB] Fetched 121 kB in 0s (1970 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0edh4xq4/patch_2.7.6-7+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 diffutils riscv64 1:3.10-1+b1 [376 kB] Fetched 376 kB in 0s (5016 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmph90nnfui/diffutils_3.10-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 m4 riscv64 1.4.19-4+b1 [290 kB] Fetched 290 kB in 0s (4114 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp88ygpjtn/m4_1.4.19-4+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB] Fetched 978 kB in 0s (9030 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmptew03nst/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 bsdutils riscv64 1:2.40.2-12 [110 kB] Fetched 110 kB in 0s (1787 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.40.2-12_riscv64.deb' to '/srv/rebuilderd/tmp/tmp93r5mz8k/bsdutils_2.40.2-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libcap2 riscv64 1:2.66-5+b1 [28.3 kB] Fetched 28.3 kB in 0s (497 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.66-5+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpj7um_93q/libcap2_2.66-5+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 gcc-riscv64-linux-gnu riscv64 4:14.2.0-1 [1432 B] Fetched 1432 B in 0s (26.9 kB/s) dpkg-name: info: moved 'gcc-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpegho62ia/gcc-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libmount1 riscv64 2.40.2-12 [217 kB] Fetched 217 kB in 0s (3180 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr3aod2ru/libmount1_2.40.2-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libpam-modules riscv64 1.5.3-7+b1 [266 kB] Fetched 266 kB in 0s (3770 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqd90dd4h/libpam-modules_1.5.3-7+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 libaudit1 riscv64 1:4.0.2-2 [53.9 kB] Fetched 53.9 kB in 0s (942 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.2-2_riscv64.deb' to '/srv/rebuilderd/tmp/tmpkik44kl6/libaudit1_4.0.2-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20241218T083657Z sid/main riscv64 liblsan0 riscv64 14.2.0-9 [1078 kB] Fetched 1078 kB in 0s (9475 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4bku5hjc/liblsan0_14.2.0-9_riscv64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_riscv64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_riscv64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpbno4va74/cache directory, not in ".." as indicated by the message above! sh: 1: printf: usage: printf format [arg ...] I: automatically chosen mode: unshare I: chroot architecture riscv64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO 127.0.0.1 - - [08/Feb/2025 19:06:52] code 404, message File not found 127.0.0.1 - - [08/Feb/2025 19:06:52] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39515 ./ InRelease 127.0.0.1 - - [08/Feb/2025 19:06:52] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:39515 ./ Release [462 B] 127.0.0.1 - - [08/Feb/2025 19:06:52] code 404, message File not found 127.0.0.1 - - [08/Feb/2025 19:06:52] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39515 ./ Release.gpg 127.0.0.1 - - [08/Feb/2025 19:06:52] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:39515 ./ Packages [181 kB] Fetched 182 kB in 0s (1427 kB/s) Reading package lists... usr-is-merged found -- running merged-usr setup hook dpkg-deb: building package 'usr-is-merged' in '/srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO/tmp/tmp.oMzH2kS64E/usr-is-merged.deb'. Selecting previously unselected package usr-is-merged. (Reading database ... 0 files and directories currently installed.) Preparing to unpack .../usr-is-merged.deb ... Unpacking usr-is-merged (1) ... Setting up usr-is-merged (1) ... I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [08/Feb/2025 19:06:53] "GET /./gcc-14-base_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:53] "GET /./libc6_2.40-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libgcc-s1_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./mawk_1.3.4.20240905-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./base-files_13.6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libtinfo6_6.5-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./debianutils_5.21_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./bash_5.2.37-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libcap2_2.66-5%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libsystemd0_257-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./bsdutils_2.40.2-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libacl1_2.3.2-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libattr1_2.5.2-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libgmp10_6.3.0%2bdfsg-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libpcre2-8-0_10.44-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libselinux1_3.7-3%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libzstd1_1.5.6%2bdfsg-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./libssl3t64_3.3.2-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./openssl-provider-legacy_3.3.2-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./coreutils_9.5-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:54] "GET /./dash_0.5.12-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./diffutils_3.10-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libbz2-1.0_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./liblzma5_5.6.3-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libmd0_1.1.0-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./tar_1.35%2bdfsg-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./dpkg_1.22.11_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./findutils_4.10.0-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./grep_3.11-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./gzip_1.12-1.2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./hostname_3.25_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./ncurses-bin_6.5-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libcrypt1_4.4.36-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./perl-base_5.40.0-8_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./sed_4.9-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libaudit-common_4.0.2-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libcap-ng0_0.8.5-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libaudit1_4.0.2-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libdb5.3t64_5.3.28%2bdfsg2-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./debconf_1.5.87_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libpam0g_1.5.3-7%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libpam-modules-bin_1.5.3-7%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libpam-modules_1.5.3-7%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libpam-runtime_1.5.3-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libblkid1_2.40.2-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libmount1_2.40.2-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libsmartcols1_2.40.2-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libudev1_257-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./libuuid1_2.40.2-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:55] "GET /./util-linux_2.40.2-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:56] "GET /./libdebconfclient0_0.274_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:56] "GET /./base-passwd_3.6.5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:56] "GET /./init-system-helpers_1.67_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:56] "GET /./libc-bin_2.40-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:56] "GET /./ncurses-base_6.5-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:06:56] "GET /./sysvinit-utils_3.11-1_riscv64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO 127.0.0.1 - - [08/Feb/2025 19:07:04] code 404, message File not found 127.0.0.1 - - [08/Feb/2025 19:07:04] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39515 ./ InRelease 127.0.0.1 - - [08/Feb/2025 19:07:04] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:39515 ./ Release 127.0.0.1 - - [08/Feb/2025 19:07:04] code 404, message File not found 127.0.0.1 - - [08/Feb/2025 19:07:04] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39515 ./ Release.gpg Reading package lists... usr-is-merged found -- running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO dummy usr-is-merged package installed -- running merged-usr essential hook Reading package lists... Building dependency tree... The following packages will be upgraded: usr-is-merged 127.0.0.1 - - [08/Feb/2025 19:07:26] "GET /./usr-is-merged_39_all.deb HTTP/1.1" 200 - 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5572 B of archives. After this operation, 13.3 kB of additional disk space will be used. Get:1 http://localhost:39515 ./ usr-is-merged 39 [5572 B] Fetched 5572 B in 0s (94.7 kB/s) Chrooting into /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO/ (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 3527 files and directories currently installed.) Preparing to unpack .../usr-is-merged_39_all.deb ... Unpacking usr-is-merged (39) over (1) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO/ Setting up usr-is-merged (39) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO/ I: installing remaining packages inside the chroot... 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./liblocale-gettext-perl_1.07-7%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./sensible-utils_0.0.24_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./libstdc%2b%2b6_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./libuchardet0_0.0.8-1%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./groff-base_1.23.0-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./bsdextrautils_2.40.2-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./libgdbm6t64_1.24-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./libpipeline1_1.5.8-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./man-db_2.13.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:27] "GET /./bzip2_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 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- [08/Feb/2025 19:07:29] "GET /./binutils-riscv64-linux-gnu_2.43.50.20241215-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./binutils_2.43.50.20241215-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./libc-dev-bin_2.40-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./linux-libc-dev_6.12.3-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./libcrypt-dev_4.4.36-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./rpcsvc-proto_1.4.3-1%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./libc6-dev_2.40-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./libisl23_0.27-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./libmpfr6_4.2.1-1%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./libmpc3_1.3.1-1%2bb3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:29] "GET /./cpp-14-riscv64-linux-gnu_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./cpp-14_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./cpp-riscv64-linux-gnu_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./cpp_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./libcc1-0_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./libgomp1_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./libitm1_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./libatomic1_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./libasan8_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./liblsan0_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./libtsan2_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./libubsan1_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:31] "GET /./libgcc-14-dev_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:32] "GET /./gcc-14-riscv64-linux-gnu_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:34] "GET /./gcc-14_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:34] "GET /./gcc-riscv64-linux-gnu_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:34] "GET /./gcc_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:34] "GET /./libstdc%2b%2b-14-dev_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:35] "GET /./g%2b%2b-14-riscv64-linux-gnu_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./g%2b%2b-14_14.2.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./g%2b%2b-riscv64-linux-gnu_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./g%2b%2b_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./make_4.3-4.1%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./libdpkg-perl_1.22.11_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./patch_2.7.6-7%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./dpkg-dev_1.22.11_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./build-essential_12.12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./libdebhelper-perl_13.21_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./libtool_2.4.7-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./dh-autoreconf_20_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./libarchive-zip-perl_1.68-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./libfile-stripnondeterminism-perl_1.14.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./dh-strip-nondeterminism_1.14.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./libelf1t64_0.192-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./dwz_0.15-1%2bb3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./libunistring5_1.3-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:36] "GET /./libicu72_72.1-5%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:37] "GET /./libxml2_2.12.7%2bdfsg%2breally2.9.14-0.2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:37] "GET /./gettext_0.22.5-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:37] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:37] "GET /./po-debconf_1.0.21%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:37] "GET /./debhelper_13.21_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:37] "GET /./tcsh_6.24.13-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:38] "GET /./libjansson-dev_2.14-2%2bb3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:38] "GET /./help2man_1.49.3%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:38] "GET /./libbz2-dev_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:38] "GET /./zlib1g-dev_1.3.dfsg%2breally1.3.1-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [08/Feb/2025 19:07:38] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpbno4va74/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO Reading package lists... Building dependency tree... Reading state information... gzip is already the newest version (1.12-1.2). mawk is already the newest version (1.3.4.20240905-1). sed is already the newest version (4.9-2). g++-14 is already the newest version (14.2.0-9). g++-14 set to manually installed. perl is already the newest version (5.40.0-8). perl set to manually installed. gettext is already the newest version (0.22.5-3). gettext set to manually installed. libgcc-14-dev is already the newest version (14.2.0-9). libgcc-14-dev set to manually installed. hostname is already the newest version (3.25). libpam0g is already the newest version (1.5.3-7+b1). groff-base is already the newest version (1.23.0-6). groff-base set to manually installed. libc6 is already the newest version (2.40-4). gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. automake is already the newest version (1:1.16.5-1.3). automake set to manually installed. libpam-runtime is already the newest version (1.5.3-7). po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. libssl3t64 is already the newest version (3.3.2-2). file is already the newest version (1:5.45-3+b1). file set to manually installed. libblkid1 is already the newest version (2.40.2-12). libc-dev-bin is already the newest version (2.40-4). libc-dev-bin set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-3). libmpfr6 is already the newest version (4.2.1-1+b2). libmpfr6 set to manually installed. libgcc-s1 is already the newest version (14.2.0-9). base-passwd is already the newest version (3.6.5). ncurses-bin is already the newest version (6.5-2+b1). g++-riscv64-linux-gnu is already the newest version (4:14.2.0-1). g++-riscv64-linux-gnu set to manually installed. libcrypt-dev is already the newest version (1:4.4.36-5). libcrypt-dev set to manually installed. libc-bin is already the newest version (2.40-4). linux-libc-dev is already the newest version (6.12.3-1). linux-libc-dev set to manually installed. libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.0-1). dh-strip-nondeterminism set to manually installed. libctf0 is already the newest version (2.43.50.20241215-1). libctf0 set to manually installed. libsframe1 is already the newest version (2.43.50.20241215-1). libsframe1 set to manually installed. libtsan2 is already the newest version (14.2.0-9). libtsan2 set to manually installed. dash is already the newest version (0.5.12-9). gcc-14-base is already the newest version (14.2.0-9). gettext-base is already the newest version (0.22.5-3). gettext-base set to manually installed. libctf-nobfd0 is already the newest version (2.43.50.20241215-1). libctf-nobfd0 set to manually installed. libsystemd0 is already the newest version (257-2). libmagic1t64 is already the newest version (1:5.45-3+b1). libmagic1t64 set to manually installed. libcap-ng0 is already the newest version (0.8.5-4). ncurses-base is already the newest version (6.5-2). gcc-14-riscv64-linux-gnu is already the newest version (14.2.0-9). gcc-14-riscv64-linux-gnu set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. libdebhelper-perl is already the newest version (13.21). libdebhelper-perl set to manually installed. dpkg is already the newest version (1.22.11). libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. binutils is already the newest version (2.43.50.20241215-1). binutils set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. libubsan1 is already the newest version (14.2.0-9). libubsan1 set to manually installed. man-db is already the newest version (2.13.0-1). man-db set to manually installed. bash is already the newest version (5.2.37-1). autoconf is already the newest version (2.72-3). autoconf set to manually installed. libstdc++6 is already the newest version (14.2.0-9). libstdc++6 set to manually installed. libzstd1 is already the newest version (1.5.6+dfsg-1+b1). libtool is already the newest version (2.4.7-8). libtool set to manually installed. libmagic-mgc is already the newest version (1:5.45-3+b1). libmagic-mgc set to manually installed. libselinux1 is already the newest version (3.7-3+b1). cpp-14 is already the newest version (14.2.0-9). cpp-14 set to manually installed. liblocale-gettext-perl is already the newest version (1.07-7+b1). liblocale-gettext-perl set to manually installed. tcsh is already the newest version (6.24.13-2). tcsh set to manually installed. perl-base is already the newest version (5.40.0-8). xz-utils is already the newest version (5.6.3-1+b1). xz-utils set to manually installed. libgomp1 is already the newest version (14.2.0-9). libgomp1 set to manually installed. g++-14-riscv64-linux-gnu is already the newest version (14.2.0-9). g++-14-riscv64-linux-gnu set to manually installed. make is already the newest version (4.3-4.1+b2). make set to manually installed. libudev1 is already the newest version (257-2). libunistring5 is already the newest version (1.3-1). libunistring5 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.14.0-1). libfile-stripnondeterminism-perl set to manually installed. libstdc++-14-dev is already the newest version (14.2.0-9). libstdc++-14-dev set to manually installed. util-linux is already the newest version (2.40.2-12). libbinutils is already the newest version (2.43.50.20241215-1). libbinutils set to manually installed. libitm1 is already the newest version (14.2.0-9). libitm1 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. gcc-14 is already the newest version (14.2.0-9). gcc-14 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libdebconfclient0 is already the newest version (0.274). base-files is already the newest version (13.6). libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. libcrypt1 is already the newest version (1:4.4.36-5). libpcre2-8-0 is already the newest version (10.44-5). libatomic1 is already the newest version (14.2.0-9). libatomic1 set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. dpkg-dev is already the newest version (1.22.11). dpkg-dev set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b2). rpcsvc-proto set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. debianutils is already the newest version (5.21). libtinfo6 is already the newest version (6.5-2+b1). findutils is already the newest version (4.10.0-3). libacl1 is already the newest version (2.3.2-2+b1). libaudit-common is already the newest version (1:4.0.2-2). cpp-14-riscv64-linux-gnu is already the newest version (14.2.0-9). cpp-14-riscv64-linux-gnu set to manually installed. autopoint is already the newest version (0.22.5-3). autopoint set to manually installed. libuuid1 is already the newest version (2.40.2-12). libmd0 is already the newest version (1.1.0-2+b1). libxml2 is already the newest version (2.12.7+dfsg+really2.9.14-0.2+b1). libxml2 set to manually installed. liblzma5 is already the newest version (5.6.3-1+b1). openssl-provider-legacy is already the newest version (3.3.2-2). binutils-common is already the newest version (2.43.50.20241215-1). binutils-common set to manually installed. grep is already the newest version (3.11-4). libsmartcols1 is already the newest version (2.40.2-12). libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. dwz is already the newest version (0.15-1+b3). dwz set to manually installed. tar is already the newest version (1.35+dfsg-3). libperl5.40 is already the newest version (5.40.0-8). libperl5.40 set to manually installed. libattr1 is already the newest version (1:2.5.2-2). sensible-utils is already the newest version (0.0.24). sensible-utils set to manually installed. init-system-helpers is already the newest version (1.67). libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. usr-is-merged is already the newest version (39). coreutils is already the newest version (9.5-1). libbz2-1.0 is already the newest version (1.0.8-6). binutils-riscv64-linux-gnu is already the newest version (2.43.50.20241215-1). binutils-riscv64-linux-gnu set to manually installed. libdpkg-perl is already the newest version (1.22.11). libdpkg-perl set to manually installed. debconf is already the newest version (1.5.87). libasan8 is already the newest version (14.2.0-9). libasan8 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libicu72 is already the newest version (72.1-5+b1). libicu72 set to manually installed. debhelper is already the newest version (13.21). debhelper set to manually installed. libjansson-dev is already the newest version (2.14-2+b3). libjansson-dev set to manually installed. libgprofng0 is already the newest version (2.43.50.20241215-1). libgprofng0 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). help2man is already the newest version (1.49.3+b1). help2man set to manually installed. sysvinit-utils is already the newest version (3.11-1). libcc1-0 is already the newest version (14.2.0-9). libcc1-0 set to manually installed. bsdextrautils is already the newest version (2.40.2-12). bsdextrautils set to manually installed. autotools-dev is already the newest version (20220109.1). autotools-dev set to manually installed. cpp-riscv64-linux-gnu is already the newest version (4:14.2.0-1). cpp-riscv64-linux-gnu set to manually installed. perl-modules-5.40 is already the newest version (5.40.0-8). perl-modules-5.40 set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libc6-dev is already the newest version (2.40-4). libc6-dev set to manually installed. libpam-modules-bin is already the newest version (1.5.3-7+b1). libbz2-dev is already the newest version (1.0.8-6). libbz2-dev set to manually installed. patch is already the newest version (2.7.6-7+b2). patch set to manually installed. diffutils is already the newest version (1:3.10-1+b1). m4 is already the newest version (1.4.19-4+b1). m4 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. bsdutils is already the newest version (1:2.40.2-12). libcap2 is already the newest version (1:2.66-5+b1). gcc-riscv64-linux-gnu is already the newest version (4:14.2.0-1). gcc-riscv64-linux-gnu set to manually installed. libmount1 is already the newest version (2.40.2-12). libpam-modules is already the newest version (1.5.3-7+b1). libaudit1 is already the newest version (1:4.0.2-2). liblsan0 is already the newest version (14.2.0-9). liblsan0 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO (Reading database ... 13673 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.kn1gjeX9WO... I: success in 127.4598 seconds Downloading dependency 130 of 146: cpp-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 131 of 146: perl-modules-5.40:riscv64=5.40.0-8 Downloading dependency 132 of 146: libjansson4:riscv64=2.14-2+b3 Downloading dependency 133 of 146: libc6-dev:riscv64=2.40-4 Downloading dependency 134 of 146: libpam-modules-bin:riscv64=1.5.3-7+b1 Downloading dependency 135 of 146: libbz2-dev:riscv64=1.0.8-6 Downloading dependency 136 of 146: patch:riscv64=2.7.6-7+b2 Downloading dependency 137 of 146: diffutils:riscv64=1:3.10-1+b1 Downloading dependency 138 of 146: m4:riscv64=1.4.19-4+b1 Downloading dependency 139 of 146: zlib1g-dev:riscv64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 140 of 146: bsdutils:riscv64=1:2.40.2-12 Downloading dependency 141 of 146: libcap2:riscv64=1:2.66-5+b1 Downloading dependency 142 of 146: gcc-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 143 of 146: libmount1:riscv64=2.40.2-12 Downloading dependency 144 of 146: libpam-modules:riscv64=1.5.3-7+b1 Downloading dependency 145 of 146: libaudit1:riscv64=1:4.0.2-2 Downloading dependency 146 of 146: liblsan0:riscv64=14.2.0-9 env --chdir=/tmp/rebuilderddaPY3x/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1734453645 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildUOkSdz/debrebuild.sbuildrc.5p2dtTXwOEV1 sbuild --build=riscv64 --host=riscv64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildUOkSdz/debrebuild.tar._DcdX1MzbywU --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --starting-build-commands=grep -iq "^Rules-Requires-Root:" "%p/debian/control" || sed -i "1iRules-Requires-Root: no" "%p/debian/control" --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=bedops-2.4.41+dfsg /tmp/rebuilderddaPY3x/inputs/bedops_2.4.41+dfsg-3.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.88.3 (02 February 2025) on repro-build-bj-01 +==============================================================================+ | bedops 2.4.41+dfsg-3 (riscv64) Sat, 08 Feb 2025 11:09:01 +0000 | +==============================================================================+ Package: bedops Version: 2.4.41+dfsg-3 Source Version: 2.4.41+dfsg-3 Distribution: unstable Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildUOkSdz/debrebuild.tar._DcdX1MzbywU to /srv/rebuilderd/tmp/tmp.sbuild.BMhYd2CSXt... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sat, 08 Feb 2025 11:09:38 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /tmp/rebuilderddaPY3x/inputs/bedops_2.4.41+dfsg-3.dsc exists in /tmp/rebuilderddaPY3x/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 08 Feb 2025 11:09:48 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, libjansson-dev, zlib1g-dev, tcsh, build-essential Filtered Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, libjansson-dev, zlib1g-dev, tcsh, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-SUdTKC/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sat, 08 Feb 2025 11:10:13 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment Sat, 08 Feb 2025 11:10:16 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.10-riscv64 #1 SMP Debian 6.12.10-1 (2025-01-18) riscv64 (riscv64) Toolchain package versions: binutils_2.43.50.20241215-1 dpkg-dev_1.22.11 g++-14_14.2.0-9 gcc-14_14.2.0-9 libc6-dev_2.40-4 libstdc++-14-dev_14.2.0-9 libstdc++6_14.2.0-9 linux-libc-dev_6.12.3-1 Package versions: autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-3 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.5 bash_5.2.37-1 binutils_2.43.50.20241215-1 binutils-common_2.43.50.20241215-1 binutils-riscv64-linux-gnu_2.43.50.20241215-1 bsdextrautils_2.40.2-12 bsdutils_1:2.40.2-12 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-9 cpp-14-riscv64-linux-gnu_14.2.0-9 cpp-riscv64-linux-gnu_4:14.2.0-1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.21 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b3 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-9 g++-14-riscv64-linux-gnu_14.2.0-9 g++-riscv64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-9 gcc-14-base_14.2.0-9 gcc-14-riscv64-linux-gnu_14.2.0-9 gcc-riscv64-linux-gnu_4:14.2.0-1 gettext_0.22.5-3 gettext-base_0.22.5-3 grep_3.11-4 groff-base_1.23.0-6 gzip_1.12-1.2 help2man_1.49.3+b1 hostname_3.25 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-9 libatomic1_14.2.0-9 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2 libbinutils_2.43.50.20241215-1 libblkid1_2.40.2-12 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-4 libc-dev-bin_2.40-4 libc6_2.40-4 libc6-dev_2.40-4 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-9 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.50.20241215-1 libctf0_2.43.50.20241215-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.274 libdebhelper-perl_13.21 libdpkg-perl_1.22.11 libelf1t64_0.192-4 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-14-dev_14.2.0-9 libgcc-s1_14.2.0-9 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgomp1_14.2.0-9 libgprofng0_2.43.50.20241215-1 libicu72_72.1-5+b1 libisl23_0.27-1 libitm1_14.2.0-9 libjansson-dev_2.14-2+b3 libjansson4_2.14-2+b3 liblocale-gettext-perl_1.07-7+b1 liblsan0_14.2.0-9 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmd0_1.1.0-2+b1 libmount1_2.40.2-12 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libpam-modules_1.5.3-7+b1 libpam-modules-bin_1.5.3-7+b1 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7+b1 libpcre2-8-0_10.44-5 libperl5.40_5.40.0-8 libpipeline1_1.5.8-1 libselinux1_3.7-3+b1 libsframe1_2.43.50.20241215-1 libsmartcols1_2.40.2-12 libssl3t64_3.3.2-2 libstdc++-14-dev_14.2.0-9 libstdc++6_14.2.0-9 libsystemd0_257-2 libtinfo6_6.5-2+b1 libtool_2.4.7-8 libtsan2_14.2.0-9 libubsan1_14.2.0-9 libuchardet0_0.0.8-1+b2 libudev1_257-2 libunistring5_1.3-1 libuuid1_2.40.2-12 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libzstd1_1.5.6+dfsg-1+b1 linux-libc-dev_6.12.3-1 m4_1.4.19-4+b1 make_4.3-4.1+b2 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 openssl-provider-legacy_3.3.2-2 patch_2.7.6-7+b2 perl_5.40.0-8 perl-base_5.40.0-8 perl-modules-5.40_5.40.0-8 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1+b2 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.11-1 tar_1.35+dfsg-3 tcsh_6.24.13-2 usr-is-merged_39 util-linux_2.40.2-12 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Sat, 08 Feb 2025 11:10:16 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bedops Binary: bedops, bedops-doc Architecture: any all Version: 2.4.41+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Étienne Mollier Homepage: https://github.com/bedops/bedops Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/bedops Vcs-Git: https://salsa.debian.org/med-team/bedops.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, libjansson-dev, zlib1g-dev, tcsh Build-Depends-Indep: sphinx-common, dh-sequence-sphinxdoc, libjs-mathjax, python3-sphinx Package-List: bedops deb science optional arch=any bedops-doc deb doc optional arch=all Checksums-Sha1: 4f982f219bbf756e2502ca38e8a512b2f5c8c157 13466240 bedops_2.4.41+dfsg.orig.tar.xz 6b5f466ab1307227c5cdc7263512d87ad85ace65 10900 bedops_2.4.41+dfsg-3.debian.tar.xz Checksums-Sha256: 76b239863512daa8e934b1565eee974977de440e4adca0d6f8039d9376a007f4 13466240 bedops_2.4.41+dfsg.orig.tar.xz 66b20be95d9d5e06d41a433f514f3aad8ada3f4ddbaf6e53472c7a24411f3064 10900 bedops_2.4.41+dfsg-3.debian.tar.xz Files: d2e57e5c93e9d612d7457092e112ffa5 13466240 bedops_2.4.41+dfsg.orig.tar.xz 3ca9861afade636440c41b7a824de9a8 10900 bedops_2.4.41+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdhrlISHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+bi1noP/i2+D3eHtUnPGK5oSN4BJ9UN1OvrKstu O6LUlPaQhmv+lLsh/6euM767VVlz2yigMq63fWSgHNKQAnlhrEObEhGFU+JyhXAf Ti+SBaS1fKVbMclFjwwY6jS8lAQPlkutxh7gjpH0SBm4rhf/Wj8J9ed8aXt5S8ol gwursfalaHunGLMc6FwKB87i78orgGMnHyJ43U0t4SWBwLK7hc5V7H73wREa2++X gV4slQFVEy/Z+aA9QRjtN/h7Cijb2H0XXTdqwUoFA5jg3KaRLaYHyUmg6FGy2rjA ram7tjlKpqYTsnXKbtva7fkGjLiukWFbnfaqAB4slIdG9AyqljzQ0hvL5/o5Z0xl JwCDUV0V02y1NqaBRa5jKyS2gOzHS9wfUkJi/mnRndENN3Ns5H0jnqZs1cJVL21E CpAsX0R0iMLLcjgvZq5KcMqQc3ASPNKMevmcCdsuYIBpRw8ZfToyRMWGaLaK/44z AQLxMUEL6yOD+hsG8J2c4CgtwSrBAWfF/iNq4cQ148+lN5F6gAU+AO9AeczSIa6H FIaLwz40u5il3mNap49fRnKSfVO29Z4snS1eP5Avj0AkcQNGNCwxds88xWnCVqxP Uc3jpqsUXCcin9z+JaxZsJOldA91+tzmJQoUKD+Xq8HgZB8FzZu4vs0CfZ4GaU80 g+KIDFu7ADTw =rycY -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./bedops_2.4.41+dfsg-3.dsc: unsupported subcommand dpkg-source: info: extracting bedops in /build/reproducible-path/bedops-2.4.41+dfsg dpkg-source: info: unpacking bedops_2.4.41+dfsg.orig.tar.xz dpkg-source: info: unpacking bedops_2.4.41+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying tests_use_installed_binaries.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying use_debian_libs dpkg-source: info: applying parallel.patch dpkg-source: info: applying adapt_to_new_sphinx.patch dpkg-source: info: applying intersphinx dpkg-buildtree: error: unknown option 'is-rootless' Use --help for program usage information. Install fakeroot ---------------- Setup apt archive ----------------- Merged Build-Depends: fakeroot Filtered Build-Depends: fakeroot dpkg-deb: building package 'sbuild-build-depends-fakeroot-dummy' in '/build/reproducible-path/resolver-SUdTKC/apt_archive/sbuild-build-depends-fakeroot-dummy.deb'. Install fakeroot build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sat, 08 Feb 2025 11:10:49 +0000 | +------------------------------------------------------------------------------+ grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/bedops-2.4.41+dfsg/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/bedops-2.4.41+dfsg/debian/control" ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ I: Finished running 'grep -iq "^Rules-Requires-Root:" "/build/reproducible-path/bedops-2.4.41+dfsg/debian/control" || sed -i "1iRules-Requires-Root: no" "/build/reproducible-path/bedops-2.4.41+dfsg/debian/control"'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1734453645 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package bedops dpkg-buildpackage: info: source version 2.4.41+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg' dh_auto_clean make -j4 clean make[2]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg' make clean -f system.mk/Makefile.linux make[3]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg' rm -rf bin rm -rf bin rm -rf bin make -C applications/bed/bedextract/src -f Makefile clean make -C applications/bed/bedmap/src -f Makefile clean make -C applications/bed/bedops/src -f Makefile clean rm -rf modules make -C applications/bed/closestfeats/src -f Makefile clean make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedextract/src' rm -rf objects_typical make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedmap/src' rm -rf objects_typical make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedops/src' rm -rf objects_typical rm -rf ../bin rm -rf ../bin rm -rf ../bin make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedextract/src' make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedmap/src' make -C applications/bed/conversion/src -f Makefile clean make -C applications/bed/sort-bed/src -f Makefile clean make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedops/src' make -C applications/bed/starch/src -f Makefile clean make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/closestfeats/src' rm -rf objects_typical make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/sort-bed/src' make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/conversion/src' rm -rf ../bin rm -rf ../bin make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/starch/src' rm -rf ../lib make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/closestfeats/src' rm -rf objects rm -f ../lib/libstarch_debug.a rm -rf objects-typical rm -f ../lib/libstarch_gprof.a rm -rf *.so *~ rm -rf ../bin rm -rf objects make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/sort-bed/src' make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/conversion/src' rm -rf ../bin make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/starch/src' rm -rf third-party/bzip2-1.0.6 rm -f third-party/bzip2 rm -rf third-party/jansson-2.6 rm -f third-party/jansson rm -rf third-party/zlib-1.2.7 rm -f third-party/zlib rm -rf bin make[3]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg' make[2]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg' rm -rf docs/_build/ make[1]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg' make -f system.mk/Makefile.linux make[2]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg' #bzcat | tar -x -C third-party #cd third-party/jansson-2.6 && ./configure --prefix=/build/reproducible-path/bedops-2.4.41+dfsg/third-party/jansson-2.6 && make && make install && cd /build/reproducible-path/bedops-2.4.41+dfsg && rm -f jansson && ln -sf jansson-2.6 third-party/jansson #bzcat | tar -x -C third-party #cd third-party/bzip2-1.0.6 && make libbz2.a && cd /build/reproducible-path/bedops-2.4.41+dfsg && rm -f bzip2 && ln -sf bzip2-1.0.6 third-party/bzip2 #bzcat | tar -x -C third-party #cd third-party/zlib-1.2.7 && ./configure --static && make && cd /build/reproducible-path/bedops-2.4.41+dfsg && rm -f zlib && ln -sf zlib-1.2.7 third-party/zlib make build -f /build/reproducible-path/bedops-2.4.41+dfsg/system.mk/Makefile.linux make[3]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg' make -C applications/bed/bedextract/src -f Makefile build make -C applications/bed/bedmap/src -f Makefile build make -C applications/bed/bedops/src -f Makefile build make -C applications/bed/closestfeats/src -f Makefile build make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedextract/src' mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedmap/src' mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedops/src' mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/closestfeats/src' mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p ../bin && g++ -o ../bin/bedextract-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ExtractRows.cpp mkdir -p ../bin && g++ -o ../bin/bedops-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedops.cpp mkdir -p ../bin && g++ -o ../bin/bedmap-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedmap.cpp mkdir -p ../bin && g++ -o ../bin/closest-features-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ClosestFeature.cpp In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32, from ExtractRows.cpp:40: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ExtractRows.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/algorithm/visitors/helpers/ProcessBedVisitorRow.hpp:33, from Bedops.cpp:40: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from Bedops.cpp:27: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32, from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch.hpp:39, from ClosestFeature.cpp:38: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from ClosestFeature.cpp:27: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32, from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch_minmem.hpp:36, from ../../../../interfaces/general-headers/algorithm/../../src/algorithm/sweep/WindowSweepImpl.cpp:27, from ../../../../interfaces/general-headers/algorithm/WindowSweep.hpp:91, from ../../../../interfaces/general-headers/algorithm/visitors/bed/BedBaseVisitor.hpp:31, from ../../../../interfaces/general-headers/algorithm/visitors/BedVisitors.hpp:27, from Bedmap.cpp:37: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from Bedmap.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/algorithm/visitors/NumericalVisitors.hpp:32, from ../../../../interfaces/general-headers/algorithm/visitors/BedVisitors.hpp:34: ../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:43:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 43 | struct abs_diff : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:44, from ExtractRows.cpp:43: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch.hpp:42: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator::bed_check_iterator(std::istream&, const std::string&, Ext::PooledMemory&, const std::string&, bool) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:136:36: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ In file included from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch.hpp:42, from Bedops.cpp:41: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:292:36, inlined from ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:267:24, inlined from ‘std::pair Bed::find_bed_range(FILE*, TargetIter, TargetIter, Op) [with TargetIter = bed_check_iterator*, 16>; Op = Visitors::BedHelpers::Println]’ at ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:102:64: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ rm -rf objects_typical make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedextract/src' make -C applications/bed/conversion/src -f Makefile build make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/conversion/src' mkdir -p ../bin && cc -Wall -Wextra -pedantic -std=c99 -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -iquote"/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/conversion/src" -iquote"../../../../interfaces/general-headers" convert2bed.c -o ../bin/convert2bed-typical -lpthread convert2bed.c: In function ‘c2b_line_convert_rmsk_to_bed_unsorted’: convert2bed.c:3780:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 3780 | fprintf(stderr, "Error: Invalid query coordinates at line [%llu]\n", c2b_globals.rmsk->line); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu rm -rf objects_typical make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/closestfeats/src' make -C applications/bed/sort-bed/src -f Makefile build make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/sort-bed/src' mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects-typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects-typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects-typical/starchHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects-typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_JSONMetadataExists(FILE**, const char*)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1089:20: warning: comparison is always true due to limited range of data type [-Wtype-limits] 1089 | } while (currC != EOF); | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1090:63: warning: comparison is always false due to limited range of data type [-Wtype-limits] 1090 | if ((nReadBytes == STARCH_LEGACY_METADATA_SIZE) || (currC == EOF)) { | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readJSONMetadata(json_t**, FILE**, const char*, Metadata**, CompressionType*, ArchiveVersion**, char**, char**, uint64_t*, Boolean*, Boolean, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1306:24: warning: comparison is always true due to limited range of data type [-Wtype-limits] 1306 | } while (currC != EOF); | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ convert2bed.c: In function ‘c2b_line_convert_sam_to_bed_unsorted_with_split_operation’: convert2bed.c:5017:25: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 5017 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ convert2bed.c:5043:21: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 5043 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ convert2bed.c:5061:21: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 5061 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ convert2bed.c:4950:25: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 4950 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ convert2bed.c:4974:21: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 4974 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects-typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘void starch::UNSTARCH_printMetadataSignature(const unsigned char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2276:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2276 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2278:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2278 | static_cast( mdSha1BufferLength )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2640:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2640 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2642:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2642 | static_cast( STARCH2_MD_FOOTER_SHA1_LENGTH )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects-typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers rm -rf objects make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/conversion/src' make -C applications/bed/starch/src -f Makefile build make[4]: Entering directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/starch/src' mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘void starch::UNSTARCH_printMetadataSignature(const unsigned char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2276:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2276 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2278:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2278 | static_cast( mdSha1BufferLength )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2640:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2640 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2642:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2642 | static_cast( STARCH2_MD_FOOTER_SHA1_LENGTH )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1651:83: note: length computed here 1651 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1678:75: note: length computed here 1678 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1667:75: note: length computed here 1667 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:200:32: note: length computed here 200 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects-typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 SortDetails.cpp -o objects-typical/SortDetails.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2559:40: note: length computed here 2559 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ SortDetails.cpp: In function ‘ChromBedData* initializeChromBedData(char*, double*)’: SortDetails.cpp:250:12: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 250 | strncpy(chrom->chromName, chromBuf, chromBufLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SortDetails.cpp:249:25: note: length computed here 249 | chromBufLen = strlen(chromBuf); // we know >= 1 | ~~~~~~^~~~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator& Bed::bed_check_iterator::operator++() [with BedType = Bed::BasicCoords; long unsigned int SZ = 512]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:261:36, inlined from ‘BedOperations::BedPadReader::BedType* BedOperations::BedPadReader::ReadLine() [with IterType = Bed::bed_check_iterator*, 512>]’ at BedPadReader.hpp:140:11, inlined from ‘void BedOperations::nextPartitionGroup(BedFiles&, PQueue&) [with BedFiles = std::vector*, 512> >*, std::allocator*, 512> >*> >; PQueue = std::priority_queue*, std::vector*>, Bed::InvertGenomicAddressCompare, Bed::BasicCoords > >]’ at Bedops.cpp:1411:39: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ SortDetails.cpp: In function ‘void lexSortBedData(BedData*)’: SortDetails.cpp:1343:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1343 | strncpy(chromBuf, beds->chroms[i]->chromName, chromBufLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SortDetails.cpp:1342:33: note: length computed here 1342 | chromBufLen = strlen(beds->chroms[i]->chromName); // we know >= 1 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘ChromBedData* initializeChromBedData(char*, double*)’, inlined from ‘int processData(const char**, unsigned int, double, char*, bool, bool)’ at SortDetails.cpp:909:59: SortDetails.cpp:250:12: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 250 | strncpy(chrom->chromName, chromBuf, chromBufLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SortDetails.cpp:249:25: note: length computed here 249 | chromBufLen = strlen(chromBuf); // we know >= 1 | ~~~~~~^~~~~~~~~~ mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_JSONMetadataExists(FILE**, const char*)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1089:20: warning: comparison is always true due to limited range of data type [-Wtype-limits] 1089 | } while (currC != EOF); | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1090:63: warning: comparison is always false due to limited range of data type [-Wtype-limits] 1090 | if ((nReadBytes == STARCH_LEGACY_METADATA_SIZE) || (currC == EOF)) { | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readJSONMetadata(json_t**, FILE**, const char*, Metadata**, CompressionType*, ArchiveVersion**, char**, char**, uint64_t*, Boolean*, Boolean, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1306:24: warning: comparison is always true due to limited range of data type [-Wtype-limits] 1306 | } while (currC != EOF); | ^ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 Sort.cpp -o objects-typical/Sort.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 CheckSort.cpp -o objects-typical/CheckSort.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32, from ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:41, from CheckSort.cpp:28: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from CheckSort.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -iquote../../../.. In file included from ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:44: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::listJSONMetadata(FILE*, FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1226:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1226 | static_cast( getArchiveType() ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1230:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1230 | static_cast( getArchiveHeaderFlag() ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1231:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1231 | static_cast( getArchiveShowNewlineFlag() )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::extractAllData(const std::string&, FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:2003:51: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2003 | static_cast( getArchiveHeaderFlag() )) != 0 ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:2014:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2014 | static_cast( getArchiveHeaderFlag() )) != 0 ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator& Bed::bed_check_iterator::operator++() [with BedType = Bed::BasicCoords; long unsigned int SZ = 512]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:261:36, inlined from ‘BedOperations::BedPadReader::BedType* BedOperations::BedPadReader::ReadLine() [with IterType = Bed::bed_check_iterator*, 512>]’ at BedPadReader.hpp:140:11, inlined from ‘void BedOperations::nextPartitionGroup(BedFiles&, PQueue&) [with BedFiles = std::vector*, 512> >*, std::allocator*, 512> >*> >; PQueue = std::priority_queue*, std::vector*, std::allocator*> >, Bed::InvertGenomicAddressCompare, Bed::BasicCoords > >]’ at Bedops.cpp:1411:39: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp: In instantiation of ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’: CheckSort.cpp:51:28: required from here 51 | pool.release(*start++); | ^~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:268:12: warning: implicitly-declared ‘Bed::bed_check_iterator*, 16>::bed_check_iterator(const Bed::bed_check_iterator*, 16>&)’ is deprecated [-Wdeprecated-copy] 268 | auto __tmp = *this; | ^~~~~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:308:10: note: because ‘Bed::bed_check_iterator*, 16>’ has user-provided ‘bool Bed::bed_check_iterator::operator=(const Bed::bed_check_iterator&) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ 308 | bool operator=(const bed_check_iterator& b); | ^~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:295:14: warning: implicitly-declared ‘Bed::bed_check_iterator*, 16>::bed_check_iterator(const Bed::bed_check_iterator*, 16>&)’ is deprecated [-Wdeprecated-copy] 295 | return __tmp; | ^~~~~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:308:10: note: because ‘Bed::bed_check_iterator*, 16>’ has user-provided ‘bool Bed::bed_check_iterator::operator=(const Bed::bed_check_iterator&) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ 308 | bool operator=(const bed_check_iterator& b); | ^~~~~~~~ mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p ../bin cp starchcluster_gnuParallel.tcsh ../bin/starchcluster_gnuParallel-typical mkdir -p ../bin cp starchcluster_sge.tcsh ../bin/starchcluster_sge-typical mkdir -p ../bin cp starchcluster_slurm.tcsh ../bin/starchcluster_slurm-typical mkdir -p ../bin cp starch-diff.py ../bin/starch-diff-typical mkdir -p ../lib ar rcs ../lib/libstarch.a objects/starchConstants.o objects/unstarchHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/starchFileHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o mkdir -p ../bin g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starch.c -o objects/starch.o -iquote../../../../interfaces/general-headers -iquote../../../.. starch.c: In function ‘int main(int, char**)’: starch.c:106:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 106 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:121:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 121 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:123:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 123 | static_cast( kStarchFinalizeTransformTrue ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:146:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 146 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:161:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 161 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:163:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 163 | static_cast( kStarchFinalizeTransformTrue ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:191:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 191 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:194:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 194 | static_cast( bedGeneratePerChrSignatureFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:195:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 195 | static_cast( bedHeaderFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:196:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 196 | static_cast( bedReportProgressFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:197:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 197 | static_cast( bedReportProgressN )) != STARCH_EXIT_SUCCESS) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starch.o -o ../bin/starch-typical ../lib/libstarch.a -ljansson -lz -lbz2 mkdir -p ../bin g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c unstarch.c -o objects/unstarch.o -iquote../../../../interfaces/general-headers -iquote../../../.. unstarch.c: In function ‘int main(int, char**)’: unstarch.c:401:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 401 | static_cast( metadataOffset ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:402:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 402 | static_cast( headerFlag )) != 0) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:422:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 422 | static_cast( metadataOffset ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:423:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 423 | static_cast( headerFlag )) != 0) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:452:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 452 | static_cast( sizeof(starchRevision2HeaderBytes) ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:453:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 453 | static_cast( headerFlag )) != 0) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:473:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 473 | static_cast( sizeof(starchRevision2HeaderBytes) ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:474:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 474 | static_cast( headerFlag )) != 0) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:567:39: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 567 | UNSTARCH_printCompressionType(static_cast( type )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:798:78: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 798 | static_cast( sizeof(starchRevision2HeaderBytes) ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:809:82: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 809 | static_cast( sizeof(starchRevision2HeaderBytes) ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c: In function ‘void starch::UNSTARCH_printMetadataSha1Signature(unsigned char*)’: unstarch.c:1334:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1334 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:1336:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1336 | static_cast( sha1BufferLength )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/unstarch.o -o ../bin/unstarch-typical ../lib/libstarch.a -ljansson -lz -lbz2 mkdir -p ../bin g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchcat.c -o objects/starchcat.o -iquote../../../../interfaces/general-headers -iquote../../../.. In file included from /usr/include/c++/14/cassert:44, from starchcat.c:33: starchcat.c: In function ‘int main(int, char**)’: starchcat.c:136:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 136 | assert( STARCHCAT_allocMetadataRecords ( &mdRecords, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:137:75: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 137 | assert( STARCHCAT_allocMetadataJSONObjects ( &metadataJSONs, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:138:87: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 138 | assert( STARCHCAT_buildMetadataRecords ( &metadataJSONs, &mdRecords, static_cast( firstArgc ), static_cast( argc ), const_cast( argv ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:138:133: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 138 | assert( STARCHCAT_buildMetadataRecords ( &metadataJSONs, &mdRecords, static_cast( firstArgc ), static_cast( argc ), const_cast( argv ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:139:75: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 139 | assert( STARCHCAT_checkMetadataJSONVersions ( &metadataJSONs, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:140:145: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 140 | assert( STARCHCAT_buildUniqueChromosomeList ( &chromosomes, &numChromosomes, reinterpret_cast( mdRecords ), static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:141:69: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 141 | assert( STARCHCAT_allocChromosomeSummary ( &summary, static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:142:124: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 142 | assert( STARCHCAT_buildChromosomeSummary ( &summary, reinterpret_cast( mdRecords ), static_cast( numRecords ), const_cast( chromosomes ), static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:142:213: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 142 | assert( STARCHCAT_buildChromosomeSummary ( &summary, reinterpret_cast( mdRecords ), static_cast( numRecords ), const_cast( chromosomes ), static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:143:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 143 | assert( STARCHCAT_allocChromosomeSummaries ( &summaries, static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:144:127: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 144 | assert( STARCHCAT_buildChromosomeSummaries ( &summaries, reinterpret_cast( summary ), static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:164:61: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 164 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:178:61: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 178 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:223:60: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 223 | assert( STARCHCAT_freeMetadataRecords( &mdRecords, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:233:68: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 233 | assert (STARCHCAT_freeMetadataJSONObjects( &metadataJSONs, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_rewriteInputRecordToOutput(Metadata**, const char*, CompressionType, const char*, const MetadataRecord*, size_t*, Boolean, Boolean, Bed::LineCountType)’: starchcat.c:1338:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1338 | UNSTARCH_reverseTransformCoordinates( static_cast( t_lineIdx ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:1806:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1806 | UNSTARCH_reverseTransformCoordinates( static_cast( t_lineIdx ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT_rewriteInputRecordToOutput(Metadata**, const char*, CompressionType, const char*, const MetadataRecord*)’: starchcat.c:2450:25: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2450 | static_cast( inRec->mdOffset ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2451:25: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2451 | static_cast( inRec->hFlag )) != 0 ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2471:28: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2471 | static_cast( inRec->mdOffset ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2472:28: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2472 | static_cast( inRec->hFlag )) != 0 ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2509:23: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2509 | static_cast( outType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2511:23: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2511 | static_cast( kStarchFinalizeTransformFalse ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_mergeInputRecordsToOutput(const char*, Metadata**, const char*, CompressionType, const ChromosomeSummary*, size_t*)’: starchcat.c:3152:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 3152 | if (STARCHCAT2_setupBzip2InputStream(static_cast( inRecIdx ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:3316:69: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 3316 | static_cast( summary->numRecords ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:3455:77: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 3455 | static_cast( flushZStreamFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT_mergeInputRecordsToOutput(Metadata**, const char*, CompressionType, const ChromosomeSummary*)’: starchcat.c:4265:43: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4265 | static_cast( outType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:4267:43: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4267 | static_cast( kStarchFinalizeTransformFalse ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT_mergeChromosomeStreams(const ChromosomeSummaries*, CompressionType, const char*)’: starchcat.c:4402:60: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4402 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:4420:63: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4420 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:4447:57: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4447 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:4479:39: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4479 | static_cast( hFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT_freeChromosomeSummaries(ChromosomeSummaries**)’: starchcat.c:4541:62: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4541 | STARCHCAT_freeChromosomeSummary( &((*chrSums)->summary), static_cast( (*chrSums)->numChromosomes )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_mergeChromosomeStreams(const ChromosomeSummaries*, CompressionType, const char*, size_t*, Boolean, Boolean, Bed::LineCountType)’: starchcat.c:5902:61: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 5902 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:5929:64: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 5929 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:5952:64: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 5952 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:5990:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 5990 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:6025:38: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 6025 | static_cast( hFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:6053:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 6053 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:6055:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 6055 | static_cast( STARCH2_MD_FOOTER_SHA1_LENGTH )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_fillExtractionBufferFromBzip2Stream(Boolean*, char*, char*, size_t*, BZFILE**, size_t*, char*, size_t*, TransformState*)’: starchcat.c:6719:55: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 6719 | UNSTARCH_reverseTransformCoordinates( static_cast( *t_lineIdxPtr ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_fillExtractionBufferFromGzipStream(Boolean*, FILE**, char*, char*, size_t*, z_stream*, size_t*, char**, size_t*, TransformState*)’: starchcat.c:7060:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 7060 | UNSTARCH_reverseTransformCoordinates( static_cast( *t_lineIdxPtr ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_transformCompressionBuffer(const char*, char*, TransformState*)’: starchcat.c:7428:25: warning: the address of ‘starch::transformState::r_chromosome’ will never be NULL [-Waddress] 7428 | if ((!retransState->r_chromosome) || (strlen(retransState->r_chromosome) == 0)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from starchcat.c:50: starchcat.h:107:30: note: ‘starch::transformState::r_chromosome’ declared here 107 | char r_chromosome[TOKEN_CHR_MAX_LENGTH]; | ^~~~~~~~~~~~ In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’, inlined from ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(std::string&)’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:634:52, inlined from ‘static bool starch::Starch::isStarch(std::string&)’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:698:56, inlined from ‘Bed::bed_check_iterator::bed_check_iterator(std::istream&, const std::string&, Ext::PooledMemory&, const std::string&, bool) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:92:90: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator::bed_check_iterator(std::istream&, const std::string&, Ext::PooledMemory&, const std::string&, bool) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:136:36: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_mergeInputRecordsToOutput(const char*, Metadata**, const char*, CompressionType, const ChromosomeSummary*, size_t*)’: starchcat.c:3123:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 3123 | strncpy(transformStates[inRecIdx]->t_currentChromosome, inChr, strlen(inChr) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:3123:78: note: length computed here 3123 | strncpy(transformStates[inRecIdx]->t_currentChromosome, inChr, strlen(inChr) + 1); | ~~~~~~^~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchcat.o -o ../bin/starchcat-typical ../lib/libstarch.a -ljansson -lz -lbz2 mkdir -p ../bin g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchstrip.c -o objects/starchstrip.o -iquote../../../../interfaces/general-headers -iquote../../../.. starchstrip.c: In function ‘void starch::STARCHSTRIP_write_updated_metadata(FILE*)’: starchstrip.c:124:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 124 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchstrip.c:126:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 126 | static_cast( STARCH2_MD_FOOTER_SHA1_LENGTH )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:292:36, inlined from ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:267:24, inlined from ‘int checkSort(const char**, unsigned int)’ at CheckSort.cpp:51:28: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchstrip.o -o ../bin/starchstrip-typical ../lib/libstarch.a -ljansson -lz -lbz2 rm -rf objects make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/starch/src' mkdir -p ../bin && cp update-sort-bed-slurm.py ../bin/update-sort-bed-slurm-typical mkdir -p ../bin && cp update-sort-bed-starch-slurm.py ../bin/update-sort-bed-starch-slurm-typical mkdir -p ../bin && cp update-sort-bed-migrate-candidates.py ../bin/update-sort-bed-migrate-candidates-typical mkdir -p ../bin && g++ -o ../bin/sort-bed-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.41+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -Wextra -pedantic -ansi -O3 -std=c++11 -iquote../../../../interfaces/general-headers objects-typical/starchConstants.o objects-typical/starchFileHelpers.o objects-typical/starchHelpers.o objects-typical/starchMetadataHelpers.o objects-typical/unstarchHelpers.o objects-typical/starchSha1Digest.o objects-typical/starchBase64Coding.o objects-typical/SortDetails.o objects-typical/Sort.o objects-typical/CheckSort.o -ljansson -lz -lbz2 rm -rf objects-typical make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/sort-bed/src' rm -rf objects_typical make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.41+dfsg/applications/bed/bedops/src' In file included from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch_minmem.hpp:39: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ E: Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 2025-02-08T13:52:04Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup Sat, 08 Feb 2025 13:52:05 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 143) +------------------------------------------------------------------------------+ | Summary Sat, 08 Feb 2025 13:52:14 +0000 | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 28368 Build-Time: 9675 Distribution: unstable Fail-Stage: build Host Architecture: riscv64 Install-Time: 25 Job: /tmp/rebuilderddaPY3x/inputs/bedops_2.4.41+dfsg-3.dsc Machine Architecture: riscv64 Package: bedops Package-Time: 9783 Source-Version: 2.4.41+dfsg-3 Space: 28368 Status: attempted Version: 2.4.41+dfsg-3 -------------------------------------------------------------------------------- Finished at 2025-02-08T13:52:04Z Build needed 02:43:03, 28368k disk space E: Build failure (dpkg-buildpackage died with exit 143) sbuild failed