=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdX8jgQ6/inputs/macs_3.0.4-1_riscv64.buildinfo Source: macs Version: 3.0.4-1 rebuilderd-worker node: riscv64-07 +------------------------------------------------------------------------------+ | Downloading sources Mon, 01 Jun 2026 10:09:24 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [189 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6552 B] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [170 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [71.1 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3172 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [255 kB] Get:17 https://deb.debian.org/debian forky/main Sources [10.8 MB] Get:18 https://deb.debian.org/debian forky/non-free-firmware Sources [8544 B] Get:19 https://deb.debian.org/debian sid/main Sources [11.5 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.5 kB] Get:21 https://deb.debian.org/debian experimental/main Sources [424 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [2568 B] Fetched 34.6 MB in 27s (1259 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.4-1.dsc' macs_3.0.4-1.dsc 2171 SHA256:2a8f7b74f2c3f8828e7e77be35cf41b449fa5ea530893c750b2c8b89ca774a20 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.4.orig.tar.gz' macs_3.0.4.orig.tar.gz 200470087 SHA256:e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 'https://deb.debian.org/debian/pool/main/m/macs/macs_3.0.4-1.debian.tar.xz' macs_3.0.4-1.debian.tar.xz 1268072 SHA256:3f3d8a7b24e90dd2b394e1c83e7f4144226aff0aae51b1e315543be27258180f e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 macs_3.0.4.orig.tar.gz 3f3d8a7b24e90dd2b394e1c83e7f4144226aff0aae51b1e315543be27258180f macs_3.0.4-1.debian.tar.xz 2a8f7b74f2c3f8828e7e77be35cf41b449fa5ea530893c750b2c8b89ca774a20 macs_3.0.4-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Mon, 01 Jun 2026 10:10:28 +0000 | +------------------------------------------------------------------------------+ Rebuilding macs=3.0.4-1 in /srv/rebuilderd/tmp/rebuilderdX8jgQ6/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdX8jgQ6/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdX8jgQ6/inputs/macs_3.0.4-1_riscv64.buildinfo /srv/rebuilderd/tmp/rebuilderdX8jgQ6/inputs/macs_3.0.4-1_riscv64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/macs-3.0.4 I: verifying dsc... successful! WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/pool/main/p/poetry-core/python3-poetry-core_2.3.1-1_all.1003073.part Get:1 http://deb.debian.org/debian unstable InRelease [189 kB] Get:2 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable InRelease [189 kB] Get:3 http://deb.debian.org/debian unstable/main riscv64 Packages [10.1 MB] Get:4 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable/main riscv64 Packages [10.1 MB] Fetched 20.6 MB in 14s (1491 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260528T210836Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main riscv64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (3289 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjgwplmng/po-debconf_1.0.22_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-dev riscv64 3.13.9-3+b1 [29.8 kB] Fetched 29.8 kB in 0s (497 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvhu_ias6/python3-dev_3.13.9-3+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtool all 2.5.4-11 [539 kB] Fetched 539 kB in 0s (6551 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0gi34vph/libtool_2.5.4-11_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc-bin riscv64 2.42-16 [586 kB] Fetched 586 kB in 0s (6820 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6c4mfkt_/libc-bin_2.42-16_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 util-linux riscv64 2.42-6 [1217 kB] Fetched 1217 kB in 0s (9521 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3m27kov4/util-linux_2.42-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (400 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprbys74ge/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bc riscv64 1.07.1-4 [104 kB] Fetched 104 kB in 0s (1712 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyufstv4o/bc_1.07.1-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 autopoint all 0.26-1 [802 kB] Fetched 802 kB in 0s (8236 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0s3l_wx3/autopoint_0.26-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 grep riscv64 3.12-1 [442 kB] Fetched 442 kB in 0s (5724 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8unwd3cy/grep_3.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libatomic1 riscv64 16.1.0-1 [8492 B] Fetched 8492 B in 0s (158 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9unytdnq/libatomic1_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 binutils-common riscv64 2.46-3 [2632 kB] Fetched 2632 kB in 0s (13.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz3kebqs0/binutils-common_2.46-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pytest all 9.0.3-1 [273 kB] Fetched 273 kB in 0s (3867 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprapyg42a/python3-pytest_9.0.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gettext riscv64 0.26-1 [2307 kB] Fetched 2307 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqqilu4q7/gettext_0.26-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (222 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpfkd6zr4s/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblsan0 riscv64 16.1.0-1 [1342 kB] Fetched 1342 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpll0mmj27/liblsan0_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdebconfclient0 riscv64 0.283 [7424 B] Fetched 7424 B in 0s (135 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ur71tlx/libdebconfclient0_0.283_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable/main riscv64 file riscv64 1:5.46-5+b2 [42.4 kB] Fetched 42.4 kB in 0s (746 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmpbhacn9az/file_5.46-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sed riscv64 4.9-3 [329 kB] Fetched 329 kB in 0s (4596 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu2ozx1ng/sed_4.9-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp-riscv64-linux-gnu riscv64 4:15.2.0-5+b1 [4632 B] Fetched 4632 B in 0s (85.5 kB/s) dpkg-name: info: moved 'cpp-riscv64-linux-gnu_4%3a15.2.0-5+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp50cca5dd/cpp-riscv64-linux-gnu_15.2.0-5+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 binutils riscv64 2.46-3 [285 kB] Fetched 285 kB in 0s (4102 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw8s66pkc/binutils_2.46-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp riscv64 4:15.2.0-5+b1 [1568 B] Fetched 1568 B in 0s (28.9 kB/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-5+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpajk0bhjp/cpp_15.2.0-5+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 diffutils riscv64 1:3.12-1 [405 kB] Fetched 405 kB in 0s (5346 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpn5pkrkz0/diffutils_3.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 build-essential riscv64 12.12 [4628 B] Fetched 4628 B in 0s (86.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbz9044tf/build-essential_12.12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc-gconv-modules-extra riscv64 2.42-16 [1105 kB] Fetched 1105 kB in 0s (9745 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9_sunm4/libc-gconv-modules-extra_2.42-16_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gzip riscv64 1.13-1 [139 kB] Fetched 139 kB in 0s (2227 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsf8uxqa1/gzip_1.13-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpipeline1 riscv64 1.5.8-3 [48.2 kB] Fetched 48.2 kB in 0s (854 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppcy8scff/libpipeline1_1.5.8-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp-15 riscv64 15.2.0-17 [1276 B] Fetched 1276 B in 0s (24.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwrgf73l7/cpp-15_15.2.0-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3-stdlib riscv64 3.13.9-3+b1 [8348 B] Fetched 8348 B in 0s (155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuqh845cd/libpython3-stdlib_3.13.9-3+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3 riscv64 3.13.9-3+b1 [25.4 kB] Fetched 25.4 kB in 0s (461 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpplpi5ktm/python3_3.13.9-3+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgcc-15-dev riscv64 15.2.0-17 [5649 kB] Fetched 5649 kB in 0s (15.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps6wyglon/libgcc-15-dev_15.2.0-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Fetched 60.0 kB in 0s (1063 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplh_fuap6/autotools-dev_20240727.1+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3-all-dev riscv64 3.13.9-3+b1 [1080 B] Fetched 1080 B in 0s (18.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31zu1ari/libpython3-all-dev_3.13.9-3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable/main riscv64 python3-numpy riscv64 1:2.4.4+ds-2 [4408 kB] Fetched 4408 kB in 0s (14.9 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.4.4+ds-2_riscv64.deb' to '/srv/rebuilderd/tmp/tmp8b5jdwd4/python3-numpy_2.4.4+ds-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libbinutils riscv64 2.46-3 [508 kB] Fetched 508 kB in 0s (5576 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp199ee8j/libbinutils_2.46-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable/main riscv64 libmagic1t64 riscv64 1:5.46-5+b2 [116 kB] Fetched 116 kB in 0s (1879 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmpum15zuzp/libmagic1t64_5.46-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 ncurses-bin riscv64 6.6+20251231-1+b1 [439 kB] Fetched 439 kB in 0s (5618 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp34m1m7nw/ncurses-bin_6.6+20251231-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-hmmlearn riscv64 0.3.3-1 [147 kB] Fetched 147 kB in 1s (254 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo9nks99o/python3-hmmlearn_0.3.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libctf0 riscv64 2.46-3 [96.1 kB] Fetched 96.1 kB in 0s (1623 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3mlfstl6/libctf0_2.46-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libproc2-0 riscv64 2:4.0.4-9+b2 [62.8 kB] Fetched 62.8 kB in 0s (1100 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmpkytv73__/libproc2-0_4.0.4-9+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-sklearn-lib riscv64 1.8.0+dfsg-4 [3982 kB] Fetched 3982 kB in 1s (4636 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps5t4lbql/python3-sklearn-lib_1.8.0+dfsg-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libudev1 riscv64 261~rc1-1 [138 kB] Fetched 138 kB in 0s (2235 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpitvnybd2/libudev1_261~rc1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (13.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68u3sk9l/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmount1 riscv64 2.42-6 [227 kB] Fetched 227 kB in 0s (3372 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc5pe4ojz/libmount1_2.42-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 rpcsvc-proto riscv64 1.4.4-1 [61.5 kB] Fetched 61.5 kB in 0s (1093 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpijsqafbx/rpcsvc-proto_1.4.4-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libzstd1 riscv64 1.5.7+dfsg-3+b2 [368 kB] Fetched 368 kB in 0s (4972 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaspx7gs2/libzstd1_1.5.7+dfsg-3+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3.14 riscv64 3.14.5-1 [842 kB] Fetched 842 kB in 0s (8509 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeje5ztum/python3.14_3.14.5-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 xz-utils riscv64 5.8.3-1 [739 kB] Fetched 739 kB in 0s (7855 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbu0a2q5r/xz-utils_5.8.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-riscv64-linux-gnu riscv64 4:15.2.0-5+b1 [1432 B] Fetched 1432 B in 0s (25.6 kB/s) dpkg-name: info: moved 'gcc-riscv64-linux-gnu_4%3a15.2.0-5+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmptakzpri6/gcc-riscv64-linux-gnu_15.2.0-5+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc6 riscv64 2.42-16 [1398 kB] Fetched 1398 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfbrc14ie/libc6_2.42-16_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam-modules-bin riscv64 1.7.0-5+b2 [45.4 kB] Fetched 45.4 kB in 0s (779 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl_wyseh0/libpam-modules-bin_1.7.0-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblzma5 riscv64 5.8.3-1 [334 kB] Fetched 334 kB in 0s (4613 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9wg14b0y/liblzma5_5.8.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (7897 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98qugug3/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 coreutils riscv64 9.10-1 [3128 kB] Fetched 3128 kB in 0s (13.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjy4ypsg8/coreutils_9.10-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (203 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjfguohar/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sysvinit-utils riscv64 3.18-1 [29.3 kB] Fetched 29.3 kB in 0s (530 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbyd83lzo/sysvinit-utils_3.18-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (213 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph3wo4ful/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (3663 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsvspdavv/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (1732 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmi3qxzoj/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libqhull-r8.0 riscv64 2020.2-9 [246 kB] Fetched 246 kB in 0s (3634 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnytswi1b/libqhull-r8.0_2020.2-9_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bzip2 riscv64 1.0.8-6+b2 [40.2 kB] Fetched 40.2 kB in 0s (709 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw31d2xtz/bzip2_1.0.8-6+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.13-dev riscv64 3.13.12-1 [16.7 MB] Fetched 16.7 MB in 1s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ent79qp/libpython3.13-dev_3.13.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-15 riscv64 15.2.0-17 [531 kB] Fetched 531 kB in 0s (6373 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuocd3s6p/gcc-15_15.2.0-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libasan8 riscv64 16.1.0-1 [2994 kB] Fetched 2994 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6z4yqr38/libasan8_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libisl23 riscv64 0.27-2 [662 kB] Fetched 662 kB in 0s (7304 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_f_lf3b7/libisl23_0.27-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-iniconfig all 2.1.0-2 [7540 B] Fetched 7540 B in 0s (141 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqnva1v_8/python3-iniconfig_2.1.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libexpat1 riscv64 2.8.1-1 [114 kB] Fetched 114 kB in 0s (1855 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp9nu7q6q/libexpat1_2.8.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3-dev riscv64 3.13.9-3+b1 [8584 B] Fetched 8584 B in 0s (155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp68z7nqof/libpython3-dev_3.13.9-3+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmd0 riscv64 1.2.0-1 [43.9 kB] Fetched 43.9 kB in 0s (779 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvmn4jmia/libmd0_1.2.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libblas3 riscv64 3.12.1-7+b2 [121 kB] Fetched 121 kB in 0s (1987 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi2v612rf/libblas3_3.12.1-7+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pygments all 2.19.2+dfsg-1 [847 kB] Fetched 847 kB in 0s (7842 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl_2z0k_t/python3-pygments_2.19.2+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 man-db riscv64 2.13.1-1 [1458 kB] Fetched 1458 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4dm5ynt0/man-db_2.13.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-wheel all 0.47.0-1 [26.9 kB] Fetched 26.9 kB in 0s (480 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8q4zfv56/python3-wheel_0.47.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblocale-gettext-perl riscv64 1.07-10 [14.7 kB] Fetched 14.7 kB in 0s (264 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ktw90jy/liblocale-gettext-perl_1.07-10_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Fetched 92.5 kB in 0s (1572 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ddxyu0b/python3-typing-extensions_4.15.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debianutils riscv64 5.23.2 [91.7 kB] Fetched 91.7 kB in 0s (1546 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_2qzgxb3/debianutils_5.23.2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libexpat1-dev riscv64 2.8.1-1 [343 kB] Fetched 343 kB in 0s (4517 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpumeh_1z7/libexpat1-dev_2.8.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 mawk riscv64 1.3.4.20260302-1 [142 kB] Fetched 142 kB in 0s (2307 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl1d7tjzf/mawk_1.3.4.20260302-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtsan2 riscv64 16.1.0-1 [2705 kB] Fetched 2705 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1hf6ewk3/libtsan2_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++-15 riscv64 15.2.0-17 [28.0 kB] Fetched 28.0 kB in 0s (484 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3jc7hj55/g++-15_15.2.0-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 procps riscv64 2:4.0.4-9+b2 [876 kB] Fetched 876 kB in 0s (8616 kB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmpi_s9nsnj/procps_4.0.4-9+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-sklearn all 1.8.0+dfsg-4 [2652 kB] Fetched 2652 kB in 1s (2489 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc47bradl/python3-sklearn_1.8.0+dfsg-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-jaraco.context all 6.0.1-2 [8184 B] Fetched 8184 B in 0s (149 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9t44prs/python3-jaraco.context_6.0.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-minimal riscv64 3.13.9-3+b1 [25.4 kB] Fetched 25.4 kB in 0s (460 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6rsypxd2/python3-minimal_3.13.9-3+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmpfr6 riscv64 4.2.2-3 [666 kB] Fetched 666 kB in 0s (7372 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr26rzrza/libmpfr6_4.2.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libstdc++6 riscv64 16.1.0-1 [775 kB] Fetched 775 kB in 0s (7853 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj8mny96h/libstdc++6_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debhelper all 13.31 [932 kB] Fetched 932 kB in 0s (8899 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvgn63ma0/debhelper_13.31_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.14 riscv64 3.14.5-1 [2275 kB] Fetched 2275 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsr_6dcli/libpython3.14_3.14.5-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.2-3 [87.3 kB] Fetched 87.3 kB in 0s (1491 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmp2h93idfr/zlib1g_1.3.dfsg+really1.3.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libuuid1 riscv64 2.42-6 [34.5 kB] Fetched 34.5 kB in 0s (625 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx021ezra/libuuid1_2.42-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.14-minimal riscv64 3.14.5-1 [889 kB] Fetched 889 kB in 0s (8722 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6m7l8sng/libpython3.14-minimal_3.14.5-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dpkg riscv64 1.23.7 [1534 kB] Fetched 1534 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpob7h00r3/dpkg_1.23.7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dwz riscv64 0.16-4 [115 kB] Fetched 115 kB in 0s (1895 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzo2urud0/dwz_0.16-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dh-python all 7.20260524 [114 kB] Fetched 114 kB in 0s (1903 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpumvl2hcf/dh-python_7.20260524_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.14-dev riscv64 3.14.5-1 [17.3 MB] Fetched 17.3 MB in 1s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1u9_kaxw/libpython3.14-dev_3.14.5-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libssl3t64 riscv64 3.6.2-1 [2250 kB] Fetched 2250 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubh061ii/libssl3t64_3.6.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-packaging all 26.0-1 [64.3 kB] Fetched 64.3 kB in 0s (1115 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe67c61ec/python3-packaging_26.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (163 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz251oadt/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Fetched 11.7 kB in 0s (215 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb5u1cijj/python3-pyproject-hooks_1.2.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 readline-common all 8.3-4 [74.8 kB] Fetched 74.8 kB in 0s (1257 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2z8xdy1b/readline-common_8.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 hostname riscv64 3.25 [10.7 kB] Fetched 10.7 kB in 0s (196 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqsmnd4ge/hostname_3.25_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgprofng0 riscv64 2.46-3 [722 kB] Fetched 722 kB in 0s (7774 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7t9gnez0/libgprofng0_2.46-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmpc3 riscv64 1.3.1-3 [56.5 kB] Fetched 56.5 kB in 0s (994 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0d2jd7gk/libmpc3_1.3.1-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libreadline8t64 riscv64 8.3-4 [180 kB] Fetched 180 kB in 0s (2743 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9_r28jyq/libreadline8t64_8.3-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 tzdata all 2026b-1 [260 kB] Fetched 260 kB in 0s (3552 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo0kh_36g/tzdata_2026b-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc-dev-bin riscv64 2.42-16 [36.7 kB] Fetched 36.7 kB in 0s (661 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpveiinchx/libc-dev-bin_2.42-16_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 openssl-provider-legacy riscv64 3.6.2-1 [318 kB] Fetched 318 kB in 0s (4435 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppopst5m2/openssl-provider-legacy_3.6.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 0s (582 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8s9prx9a/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 tar riscv64 1.35+dfsg-4 [821 kB] Fetched 821 kB in 0s (8319 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyxh1w9q6/tar_1.35+dfsg-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pip all 26.1.1+dfsg-1 [1406 kB] Fetched 1406 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl_1evi5x/python3-pip_26.1.1+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.13 riscv64 3.13.12-1 [2175 kB] Fetched 2175 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgmpokmq6/libpython3.13_3.13.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libunistring5 riscv64 1.4.2-1 [475 kB] Fetched 475 kB in 0s (5812 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3dllzpvq/libunistring5_1.4.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcc1-0 riscv64 16.1.0-1 [41.7 kB] Fetched 41.7 kB in 0s (699 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31jgx5kq/libcc1-0_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3.13-minimal riscv64 3.13.12-1 [2172 kB] Fetched 2172 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3wedup_b/python3.13-minimal_3.13.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 ca-certificates all 20260223 [158 kB] Fetched 158 kB in 0s (2514 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsz4vb395/ca-certificates_20260223_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libbz2-1.0 riscv64 1.0.8-6+b2 [39.6 kB] Fetched 39.6 kB in 0s (719 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrhhfbzb/libbz2-1.0_1.0.8-6+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (551 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf36mr1f3/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-15-base riscv64 15.2.0-17 [36.8 kB] Fetched 36.8 kB in 0s (669 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc66lipx4/gcc-15-base_15.2.0-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 pybuild-plugin-pyproject all 7.20260524 [6852 B] Fetched 6852 B in 0s (127 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnnixqaps/pybuild-plugin-pyproject_7.20260524_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable/main riscv64 base-files riscv64 14.0 [72.6 kB] Fetched 72.6 kB in 0s (1268 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpup6tbhp3/base-files_14.0_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 perl-base riscv64 5.40.1-7+b1 [1676 kB] Fetched 1676 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4gz5nbc1/perl-base_5.40.1-7+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libitm1 riscv64 16.1.0-1 [25.5 kB] Fetched 25.5 kB in 0s (458 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd680484j/libitm1_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libctf-nobfd0 riscv64 2.46-3 [163 kB] Fetched 163 kB in 0s (2606 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi_76cakl/libctf-nobfd0_2.46-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3.13 riscv64 3.13.12-1 [776 kB] Fetched 776 kB in 0s (8084 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgzhukm7m/python3.13_3.13.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3.14-dev riscv64 3.14.5-1 [515 kB] Fetched 515 kB in 0s (6303 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc9pg38_v/python3.14-dev_3.14.5-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libacl1 riscv64 2.3.2-3 [32.7 kB] Fetched 32.7 kB in 0s (594 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplf32eez8/libacl1_2.3.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcap-ng0 riscv64 0.9.3-1 [17.5 kB] Fetched 17.5 kB in 0s (317 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphjdjcukw/libcap-ng0_0.9.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtinfo6 riscv64 6.6+20251231-1+b1 [349 kB] Fetched 349 kB in 0s (4783 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc6vxiyhr/libtinfo6_6.6+20251231-1+b1_riscv64.deb' Downloading dependency 1 of 217: po-debconf:riscv64=1.0.22 Downloading dependency 2 of 217: python3-dev:riscv64=3.13.9-3+b1 Downloading dependency 3 of 217: libtool:riscv64=2.5.4-11 Downloading dependency 4 of 217: libc-bin:riscv64=2.42-16 Downloading dependency 5 of 217: util-linux:riscv64=2.42-6 Downloading dependency 6 of 217: intltool-debian:riscv64=0.35.0+20060710.6 Downloading dependency 7 of 217: bc:riscv64=1.07.1-4 Downloading dependency 8 of 217: autopoint:riscv64=0.26-1 Downloading dependency 9 of 217: grep:riscv64=3.12-1 Downloading dependency 10 of 217: libatomic1:riscv64=16.1.0-1 Downloading dependency 11 of 217: binutils-common:riscv64=2.46-3 Downloading dependency 12 of 217: python3-pytest:riscv64=9.0.3-1 Downloading dependency 13 of 217: gettext:riscv64=0.26-1 Downloading dependency 14 of 217: libaudit-common:riscv64=1:4.1.2-1 Downloading dependency 15 of 217: liblsan0:riscv64=16.1.0-1 Downloading dependency 16 of 217: libdebconfclient0:riscv64=0.283 Downloading dependency 17 of 217: file:riscv64=1:5.46-5+b2 Downloading dependency 18 of 217: sed:riscv64=4.9-3 Downloading dependency 19 of 217: cpp-riscv64-linux-gnu:riscv64=4:15.2.0-5+b1 Downloading dependency 20 of 217: binutils:riscv64=2.46-3 Downloading dependency 21 of 217: cpp:riscv64=4:15.2.0-5+b1 Downloading dependency 22 of 217: 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Downloading dependency 98 of 217: python3-pyproject-hooks:riscv64=1.2.0-1 Downloading dependency 99 of 217: readline-common:riscv64=8.3-4 Downloading dependency 100 of 217: hostname:riscv64=3.25 Downloading dependency 101 of 217: libgprofng0:riscv64=2.46-3 Downloading dependency 102 of 217: libmpc3:riscv64=1.3.1-3 Downloading dependency 103 of 217: libreadline8t64:riscv64=8.3-4 Downloading dependency 104 of 217: tzdata:riscv64=2026b-1 Downloading dependency 105 of 217: libc-dev-bin:riscv64=2.42-16 Downloading dependency 106 of 217: openssl-provider-legacy:riscv64=3.6.2-1 Downloading dependency 107 of 217: python3-inflect:riscv64=7.5.0-1 Downloading dependency 108 of 217: tar:riscv64=1.35+dfsg-4 Downloading dependency 109 of 217: python3-pip:riscv64=26.1.1+dfsg-1 Downloading dependency 110 of 217: libpython3.13:riscv64=3.13.12-1 Downloading dependency 111 of 217: libunistring5:riscv64=1.4.2-1 Downloading dependency 112 of 217: libcc1-0:riscv64=16.1.0-1 Downloading dependency 113 of 217: python3.13-minimal:riscv64=3.13.12-1 Downloading dependency 114 of 217: ca-certificates:riscv64=20260223 Downloading dependency 115 of 217: libbz2-1.0:riscv64=1.0.8-6+b2 Downloading dependency 116 of 217: media-types:riscv64=14.0.0 Downloading dependency 117 of 217: gcc-15-base:riscv64=15.2.0-17 Downloading dependency 118 of 217: pybuild-plugin-pyproject:riscv64=7.20260524 Downloading dependency 119 of 217: base-files:riscv64=14.0 Downloading dependency 120 of 217: perl-base:riscv64=5.40.1-7+b1 Downloading dependency 121 of 217: libitm1:riscv64=16.1.0-1 Downloading dependency 122 of 217: libctf-nobfd0:riscv64=2.46-3 Downloading dependency 123 of 217: python3.13:riscv64=3.13.12-1 Downloading dependency 124 of 217: python3.14-dev:riscv64=3.14.5-1 Downloading dependency 125 of 217: libacl1:riscv64=2.3.2-3 Downloading dependency 126 of 217: libcap-ng0:riscv64=0.9.3-1 Downloading dependency 127 of 217: libtinfo6:riscv64=6.6+20251231-1+b1 Downloading dependency 128 of 217: libdebhelper-perl:riscv64=13.31Get:1 http://deb.debian.org/debian unstable/main riscv64 libdebhelper-perl all 13.31 [75.7 kB] Fetched 75.7 kB in 0s (1300 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc5gf74il/libdebhelper-perl_13.31_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-typeguard all 4.4.4-2 [37.2 kB] Fetched 37.2 kB in 0s (679 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvqkcyqrb/python3-typeguard_4.4.4-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgfortran5 riscv64 16.1.0-1 [417 kB] Fetched 417 kB in 0s (5388 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyi5hpqwc/libgfortran5_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgdbm6t64 riscv64 1.26-1+b2 [78.1 kB] Fetched 78.1 kB in 0s (1340 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_grvzcbz/libgdbm6t64_1.26-1+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgdbm-compat4t64 riscv64 1.26-1+b2 [52.1 kB] Fetched 52.1 kB in 0s (923 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfvrl3e2o/libgdbm-compat4t64_1.26-1+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (3808 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0tfkjrpg/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsframe3 riscv64 2.46-3 [85.9 kB] Fetched 85.9 kB in 0s (1414 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_3znh6gk/libsframe3_2.46-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable/main riscv64 libmagic-mgc riscv64 1:5.46-5+b2 [337 kB] Fetched 337 kB in 0s (4682 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmp416ba7n_/libmagic-mgc_5.46-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pluggy all 1.6.0-2 [27.2 kB] Fetched 27.2 kB in 0s (444 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpureg3wto/python3-pluggy_1.6.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsqlite3-0 riscv64 3.46.1-9+b1 [907 kB] Fetched 907 kB in 0s (8162 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr4_ndv1z/libsqlite3-0_3.46.1-9+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-5+b2 [561 kB] Fetched 561 kB in 0s (6134 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmpffdn8phs/libgmp10_6.3.0+dfsg-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libxml2-16 riscv64 2.15.2+dfsg-0.1 [639 kB] Fetched 639 kB in 0s (7024 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqvk53x5w/libxml2-16_2.15.2+dfsg-0.1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (357 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjy8pcotw/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-all-dev riscv64 3.13.9-3+b1 [1080 B] Fetched 1080 B in 0s (20.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsfuw8his/python3-all-dev_3.13.9-3+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cython3 riscv64 3.1.6+dfsg-2+b1 [3270 kB] Fetched 3270 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4xmgwr9j/cython3_3.1.6+dfsg-2+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-cykhash riscv64 2.0.0-4 [674 kB] Fetched 674 kB in 1s (756 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyocykmxq/python3-cykhash_2.0.0-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 findutils riscv64 4.10.0-4 [704 kB] Fetched 704 kB in 0s (7680 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf2lhwjlj/findutils_4.10.0-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libstdc++-15-dev riscv64 15.2.0-17 [6743 kB] Fetched 6743 kB in 0s (15.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp23h65rbd/libstdc++-15-dev_15.2.0-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-decorator all 5.2.1-2 [33.0 kB] Fetched 33.0 kB in 0s (574 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphm9vcsrj/python3-decorator_5.2.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libncursesw6 riscv64 6.6+20251231-1+b1 [141 kB] Fetched 141 kB in 0s (2304 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr40hrv4b/libncursesw6_6.6+20251231-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpcre2-8-0 riscv64 10.46-1+b2 [296 kB] Fetched 296 kB in 0s (4175 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbjqhfym4/libpcre2-8-0_10.46-1+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (3431 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyak8_xnz/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-installer all 1.0.1+dfsg1-1 [19.6 kB] Fetched 19.6 kB in 0s (354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7rawy6uj/python3-installer_1.0.1+dfsg1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 groff-base riscv64 1.24.1-1 [1311 kB] Fetched 1311 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn2qkmq3g/groff-base_1.24.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable/main riscv64 python3-build all 1.4.0-1 [38.8 kB] Fetched 38.8 kB in 0s (701 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgpxu1jne/python3-build_1.4.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++-15-riscv64-linux-gnu riscv64 15.2.0-17 [15.9 MB] Fetched 15.9 MB in 1s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfkn0r6b6/g++-15-riscv64-linux-gnu_15.2.0-17_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable/main riscv64 linux-libc-dev all 7.0.9-1 [1968 kB] Fetched 1968 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp75c27i89/linux-libc-dev_7.0.9-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdpkg-perl all 1.23.7 [669 kB] Fetched 669 kB in 0s (7288 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwtsts3oc/libdpkg-perl_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.13-minimal riscv64 3.13.12-1 [862 kB] Fetched 862 kB in 0s (8623 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbgpk22j2/libpython3.13-minimal_3.13.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (1242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr5sn0_f2/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.13-stdlib riscv64 3.13.12-1 [1936 kB] Fetched 1936 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo43h380_/libpython3.13-stdlib_3.13.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libaudit1 riscv64 1:4.1.2-1+b1 [58.7 kB] Fetched 58.7 kB in 0s (1001 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpf2ls29ak/libaudit1_4.1.2-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcrypt1 riscv64 1:4.5.1-1+b1 [113 kB] Fetched 113 kB in 0s (1896 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpt5i_9qnt/libcrypt1_4.5.1-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.2-3 [991 kB] Fetched 991 kB in 0s (9157 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmppf2xxf0c/zlib1g-dev_1.3.dfsg+really1.3.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 base-passwd riscv64 3.6.8 [54.8 kB] Fetched 54.8 kB in 0s (961 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp53v8r5k0/base-passwd_3.6.8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam-modules riscv64 1.7.0-5+b2 [172 kB] Fetched 172 kB in 0s (2748 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp0bo2o65/libpam-modules_1.7.0-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam0g riscv64 1.7.0-5+b2 [66.4 kB] Fetched 66.4 kB in 0s (1175 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8lifibu7/libpam0g_1.7.0-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dash riscv64 0.5.12-12 [101 kB] Fetched 101 kB in 0s (1718 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpux7f8h9h/dash_0.5.12-12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsmartcols1 riscv64 2.42-6 [154 kB] Fetched 154 kB in 0s (2501 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkf53j47d/libsmartcols1_2.42-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (201 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj9jyt5r0/python3-zipp_3.23.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gettext-base riscv64 0.26-1 [313 kB] Fetched 313 kB in 0s (4466 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6t7i0l9b/gettext-base_0.26-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-11+b1 [719 kB] Fetched 719 kB in 0s (7782 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3rvstzk0/libdb5.3t64_5.3.28+dfsg2-11+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libselinux1 riscv64 3.10-1 [88.3 kB] Fetched 88.3 kB in 0s (1437 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr8amasmd/libselinux1_3.10-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 make riscv64 4.4.1-3 [463 kB] Fetched 463 kB in 0s (5827 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjj00og24/make_4.4.1-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-autocommand all 2.2.2-4 [13.7 kB] Fetched 13.7 kB in 0s (250 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7azyqu9/python3-autocommand_2.2.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3.13-dev riscv64 3.13.12-1 [512 kB] Fetched 512 kB in 0s (5964 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnp6waaq1/python3.13-dev_3.13.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-scipy riscv64 1.17.1-4 [18.7 MB] Fetched 18.7 MB in 2s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ixrwra4/python3-scipy_1.17.1-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3.14-minimal riscv64 3.14.5-1 [2266 kB] Fetched 2266 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0aq_jv6v/python3.14-minimal_3.14.5-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dh-autoreconf all 22 [12.2 kB] Fetched 12.2 kB in 0s (196 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphmx_u5c7/dh-autoreconf_22_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp-15-riscv64-linux-gnu riscv64 15.2.0-17 [14.8 MB] Fetched 14.8 MB in 1s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvnzza7b8/cpp-15-riscv64-linux-gnu_15.2.0-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bash riscv64 5.3-3 [1560 kB] Fetched 1560 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprhc1eyll/bash_5.3-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgomp1 riscv64 16.1.0-1 [137 kB] Fetched 137 kB in 0s (2267 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph7cdfj_u/libgomp1_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblapack3 riscv64 3.12.1-7+b2 [1969 kB] Fetched 1969 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfrq6thzr/liblapack3_3.12.1-7+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libffi8 riscv64 3.5.2-4 [21.1 kB] Fetched 21.1 kB in 0s (387 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8lyktkvp/libffi8_3.5.2-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libjs-sphinxdoc all 9.1.0-4 [45.7 kB] Fetched 45.7 kB in 0s (817 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx21ijz7u/libjs-sphinxdoc_9.1.0-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libperl5.40 riscv64 5.40.1-7+b1 [3958 kB] Fetched 3958 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ig7w_9w/libperl5.40_5.40.1-7+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.14-stdlib riscv64 3.14.5-1 [2289 kB] Fetched 2289 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprsya_cwy/libpython3.14-stdlib_3.14.5-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libjansson4 riscv64 2.14-2+b4 [40.1 kB] Fetched 40.1 kB in 0s (716 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppy4js9zj/libjansson4_2.14-2+b4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsimde-dev all 0.8.4~rc3-5 [500 kB] Fetched 500 kB in 0s (6171 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps7p56by3/libsimde-dev_0.8.4~rc3-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dpkg-dev all 1.23.7 [1318 kB] Fetched 1318 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbyxd0qml/dpkg-dev_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libblkid1 riscv64 2.42-6 [192 kB] Fetched 192 kB in 0s (2967 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1uv70eq/libblkid1_2.42-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 m4 riscv64 1.4.21-1 [330 kB] Fetched 330 kB in 0s (4627 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppro36kxt/m4_1.4.21-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (228 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt2a0le4s/netbase_6.5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260528T210836Z unstable/main riscv64 python3-numpy-dev riscv64 1:2.4.4+ds-2 [183 kB] Fetched 183 kB in 0s (2848 kB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.4.4+ds-2_riscv64.deb' to '/srv/rebuilderd/tmp/tmpatov1ro0/python3-numpy-dev_2.4.4+ds-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgcc-s1 riscv64 16.1.0-1 [74.2 kB] Fetched 74.2 kB in 0s (1309 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpysoexjhj/libgcc-s1_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 autoconf all 2.73-2 [516 kB] Fetched 516 kB in 0s (6300 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpclgu95vs/autoconf_2.73-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsystemd0 riscv64 261~rc1-1 [477 kB] Fetched 477 kB in 0s (6018 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9eylwwu8/libsystemd0_261~rc1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libattr1 riscv64 1:2.5.2-4 [23.0 kB] Fetched 23.0 kB in 0s (411 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmp9u7xlqox/libattr1_2.5.2-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-joblib all 1.5.2-1 [222 kB] Fetched 222 kB in 0s (3391 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_wxdfzwa/python3-joblib_1.5.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-16-base riscv64 16.1.0-1 [36.3 kB] Fetched 36.3 kB in 0s (645 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyc_k1c6z/gcc-16-base_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 help2man riscv64 1.49.3+b1 [198 kB] Fetched 198 kB in 0s (3016 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplm8slqm1/help2man_1.49.3+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++-riscv64-linux-gnu riscv64 4:15.2.0-5+b1 [1200 B] Fetched 1200 B in 0s (22.3 kB/s) dpkg-name: info: moved 'g++-riscv64-linux-gnu_4%3a15.2.0-5+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp0z2aqci8/g++-riscv64-linux-gnu_15.2.0-5+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 patch riscv64 2.8-2 [134 kB] Fetched 134 kB in 0s (2169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptoxrm47d/patch_2.8-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc riscv64 4:15.2.0-5+b1 [5156 B] Fetched 5156 B in 0s (92.6 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-5+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpd1zpnp6u/gcc_15.2.0-5+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++ riscv64 4:15.2.0-5+b1 [1332 B] Fetched 1332 B in 0s (25.2 kB/s) dpkg-name: info: moved 'g++_4%3a15.2.0-5+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmploxyp7oa/g++_15.2.0-5+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 automake all 1:1.18.1-4 [877 kB] Fetched 877 kB in 0s (8656 kB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmp_0yx6nk9/automake_1.18.1-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bsdextrautils riscv64 2.42-6 [102 kB] Fetched 102 kB in 0s (1700 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0gols_py/bsdextrautils_2.42-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-all riscv64 3.13.9-3+b1 [1056 B] Fetched 1056 B in 0s (19.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgpfurdla/python3-all_3.13.9-3+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Fetched 21.2 kB in 0s (389 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp95s1_ok4/python3-threadpoolctl_3.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-15-riscv64-linux-gnu riscv64 15.2.0-17 [28.9 MB] Fetched 28.9 MB in 2s (17.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpya18lrju/gcc-15-riscv64-linux-gnu_15.2.0-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libelf1t64 riscv64 0.195-1 [62.5 kB] Fetched 62.5 kB in 0s (1109 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpagati7_r/libelf1t64_0.195-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (704 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpraxuqf2y/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libubsan1 riscv64 16.1.0-1 [1191 kB] Fetched 1191 kB in 0s (9833 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppjgbcdh6/libubsan1_16.1.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc6-dev riscv64 2.42-16 [3417 kB] Fetched 3417 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsrxmn_bw/libc6-dev_2.42-16_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 openssl riscv64 3.6.2-1 [1495 kB] Fetched 1495 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd79h8kf4/openssl_3.6.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libuchardet0 riscv64 0.0.8-2+b2 [68.8 kB] Fetched 68.8 kB in 0s (1165 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkzo0_6at/libuchardet0_0.0.8-2+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 perl riscv64 5.40.1-7+b1 [264 kB] Fetched 264 kB in 0s (3892 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb5zu0ted/perl_5.40.1-7+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (493 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_9yht_xj/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debconf all 1.5.92 [123 kB] Fetched 123 kB in 0s (1992 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6odr08zx/debconf_1.5.92_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 binutils-riscv64-linux-gnu riscv64 2.46-3 [898 kB] Fetched 898 kB in 0s (8811 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5_cekzg6/binutils-riscv64-linux-gnu_2.46-3_riscv64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_riscv64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_riscv64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp8iet87bc/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture riscv64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.axopccgjFG as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.axopccgjFG 127.0.0.1 - - [01/Jun/2026 18:20:34] code 404, message File not found 127.0.0.1 - - [01/Jun/2026 18:20:34] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:43391 ./ InRelease 127.0.0.1 - - [01/Jun/2026 18:20:34] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:43391 ./ Release [462 B] 127.0.0.1 - - [01/Jun/2026 18:20:34] code 404, message File not found 127.0.0.1 - - [01/Jun/2026 18:20:34] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:43391 ./ Release.gpg 127.0.0.1 - - [01/Jun/2026 18:20:34] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:43391 ./ Packages [261 kB] Fetched 262 kB in 0s (2072 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [01/Jun/2026 18:20:34] "GET /./gcc-16-base_16.1.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:34] "GET /./libc-gconv-modules-extra_2.42-16_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:35] "GET /./libc6_2.42-16_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:35] "GET /./libgcc-s1_16.1.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:35] "GET /./mawk_1.3.4.20260302-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:35] "GET /./base-files_14.0_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:35] "GET /./libtinfo6_6.6%2b20251231-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:35] "GET /./debianutils_5.23.2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:35] "GET /./bash_5.3-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:35] "GET /./libacl1_2.3.2-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Jun/2026 18:20:35] "GET /./libattr1_2.5.2-4_riscv64.deb HTTP/1.1" 200 - 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I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp8iet87bc/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.axopccgjFG Reading package lists... Building dependency tree... Reading state information... po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. python3-dev is already the newest version (3.13.9-3+b1). python3-dev set to manually installed. libtool is already the newest version (2.5.4-11). libtool set to manually installed. libc-bin is already the newest version (2.42-16). util-linux is already the newest version (2.42-6). intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. bc is already the newest version (1.07.1-4). bc set to manually installed. autopoint is already the newest version (0.26-1). autopoint set to manually installed. grep is already the newest version (3.12-1). libatomic1 is already the newest version (16.1.0-1). libatomic1 set to manually installed. binutils-common is already the newest version (2.46-3). binutils-common set to manually installed. python3-pytest is already the newest version (9.0.3-1). python3-pytest set to manually installed. gettext is already the newest version (0.26-1). gettext set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). liblsan0 is already the newest version (16.1.0-1). liblsan0 set to manually installed. libdebconfclient0 is already the newest version (0.283). file is already the newest version (1:5.46-5+b2). file set to manually installed. sed is already the newest version (4.9-3). cpp-riscv64-linux-gnu is already the newest version (4:15.2.0-5+b1). cpp-riscv64-linux-gnu set to manually installed. binutils is already the newest version (2.46-3). binutils set to manually installed. cpp is already the newest version (4:15.2.0-5+b1). cpp set to manually installed. diffutils is already the newest version (1:3.12-1). build-essential is already the newest version (12.12). build-essential set to manually installed. libc-gconv-modules-extra is already the newest version (2.42-16). gzip is already the newest version (1.13-1). libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. cpp-15 is already the newest version (15.2.0-17). cpp-15 set to manually installed. libpython3-stdlib is already the newest version (3.13.9-3+b1). libpython3-stdlib set to manually installed. python3 is already the newest version (3.13.9-3+b1). python3 set to manually installed. libgcc-15-dev is already the newest version (15.2.0-17). libgcc-15-dev set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. libpython3-all-dev is already the newest version (3.13.9-3+b1). libpython3-all-dev set to manually installed. python3-numpy is already the newest version (1:2.4.4+ds-2). python3-numpy set to manually installed. libbinutils is already the newest version (2.46-3). libbinutils set to manually installed. libmagic1t64 is already the newest version (1:5.46-5+b2). libmagic1t64 set to manually installed. ncurses-bin is already the newest version (6.6+20251231-1+b1). python3-hmmlearn is already the newest version (0.3.3-1). python3-hmmlearn set to manually installed. libctf0 is already the newest version (2.46-3). libctf0 set to manually installed. libproc2-0 is already the newest version (2:4.0.4-9+b2). libproc2-0 set to manually installed. python3-sklearn-lib is already the newest version (1.8.0+dfsg-4). python3-sklearn-lib set to manually installed. libudev1 is already the newest version (261~rc1-1). perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. libmount1 is already the newest version (2.42-6). rpcsvc-proto is already the newest version (1.4.4-1). rpcsvc-proto set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-3+b2). python3.14 is already the newest version (3.14.5-1). python3.14 set to manually installed. xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. gcc-riscv64-linux-gnu is already the newest version (4:15.2.0-5+b1). gcc-riscv64-linux-gnu set to manually installed. libc6 is already the newest version (2.42-16). libpam-modules-bin is already the newest version (1.7.0-5+b2). liblzma5 is already the newest version (5.8.3-1). python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. coreutils is already the newest version (9.10-1). python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. sysvinit-utils is already the newest version (3.18-1). python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. libpam-runtime is already the newest version (1.7.0-5). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libqhull-r8.0 is already the newest version (2020.2-9). libqhull-r8.0 set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. libpython3.13-dev is already the newest version (3.13.12-1). libpython3.13-dev set to manually installed. gcc-15 is already the newest version (15.2.0-17). gcc-15 set to manually installed. libasan8 is already the newest version (16.1.0-1). libasan8 set to manually installed. libisl23 is already the newest version (0.27-2). libisl23 set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. libexpat1 is already the newest version (2.8.1-1). libexpat1 set to manually installed. libpython3-dev is already the newest version (3.13.9-3+b1). libpython3-dev set to manually installed. libmd0 is already the newest version (1.2.0-1). libblas3 is already the newest version (3.12.1-7+b2). libblas3 set to manually installed. python3-pygments is already the newest version (2.19.2+dfsg-1). python3-pygments set to manually installed. man-db is already the newest version (2.13.1-1). man-db set to manually installed. python3-wheel is already the newest version (0.47.0-1). python3-wheel set to manually installed. liblocale-gettext-perl is already the newest version (1.07-10). liblocale-gettext-perl set to manually installed. python3-typing-extensions is already the newest version (4.15.0-2). python3-typing-extensions set to manually installed. debianutils is already the newest version (5.23.2). libexpat1-dev is already the newest version (2.8.1-1). libexpat1-dev set to manually installed. mawk is already the newest version (1.3.4.20260302-1). libtsan2 is already the newest version (16.1.0-1). libtsan2 set to manually installed. g++-15 is already the newest version (15.2.0-17). g++-15 set to manually installed. procps is already the newest version (2:4.0.4-9+b2). procps set to manually installed. python3-sklearn is already the newest version (1.8.0+dfsg-4). python3-sklearn set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. python3-minimal is already the newest version (3.13.9-3+b1). python3-minimal set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libstdc++6 is already the newest version (16.1.0-1). libstdc++6 set to manually installed. debhelper is already the newest version (13.31). debhelper set to manually installed. libpython3.14 is already the newest version (3.14.5-1). libpython3.14 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). libuuid1 is already the newest version (2.42-6). libpython3.14-minimal is already the newest version (3.14.5-1). libpython3.14-minimal set to manually installed. dpkg is already the newest version (1.23.7). dwz is already the newest version (0.16-4). dwz set to manually installed. dh-python is already the newest version (7.20260524). dh-python set to manually installed. libpython3.14-dev is already the newest version (3.14.5-1). libpython3.14-dev set to manually installed. libssl3t64 is already the newest version (3.6.2-1). python3-packaging is already the newest version (26.0-1). python3-packaging set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. python3-pyproject-hooks is already the newest version (1.2.0-1). python3-pyproject-hooks set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. hostname is already the newest version (3.25). libgprofng0 is already the newest version (2.46-3). libgprofng0 set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. tzdata is already the newest version (2026b-1). tzdata set to manually installed. libc-dev-bin is already the newest version (2.42-16). libc-dev-bin set to manually installed. openssl-provider-legacy is already the newest version (3.6.2-1). python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. tar is already the newest version (1.35+dfsg-4). python3-pip is already the newest version (26.1.1+dfsg-1). python3-pip set to manually installed. libpython3.13 is already the newest version (3.13.12-1). libpython3.13 set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. libcc1-0 is already the newest version (16.1.0-1). libcc1-0 set to manually installed. python3.13-minimal is already the newest version (3.13.12-1). python3.13-minimal set to manually installed. ca-certificates is already the newest version (20260223). ca-certificates set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b2). media-types is already the newest version (14.0.0). media-types set to manually installed. gcc-15-base is already the newest version (15.2.0-17). gcc-15-base set to manually installed. pybuild-plugin-pyproject is already the newest version (7.20260524). pybuild-plugin-pyproject set to manually installed. base-files is already the newest version (14.0). perl-base is already the newest version (5.40.1-7+b1). libitm1 is already the newest version (16.1.0-1). libitm1 set to manually installed. libctf-nobfd0 is already the newest version (2.46-3). libctf-nobfd0 set to manually installed. python3.13 is already the newest version (3.13.12-1). python3.13 set to manually installed. python3.14-dev is already the newest version (3.14.5-1). python3.14-dev set to manually installed. libacl1 is already the newest version (2.3.2-3). libcap-ng0 is already the newest version (0.9.3-1). libtinfo6 is already the newest version (6.6+20251231-1+b1). libdebhelper-perl is already the newest version (13.31). libdebhelper-perl set to manually installed. python3-typeguard is already the newest version (4.4.4-2). python3-typeguard set to manually installed. libgfortran5 is already the newest version (16.1.0-1). libgfortran5 set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. ncurses-base is already the newest version (6.6+20251231-1). libsframe3 is already the newest version (2.46-3). libsframe3 set to manually installed. libmagic-mgc is already the newest version (1:5.46-5+b2). libmagic-mgc set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. libsqlite3-0 is already the newest version (3.46.1-9+b1). libsqlite3-0 set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). libxml2-16 is already the newest version (2.15.2+dfsg-0.1). libxml2-16 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. python3-all-dev is already the newest version (3.13.9-3+b1). python3-all-dev set to manually installed. cython3 is already the newest version (3.1.6+dfsg-2+b1). cython3 set to manually installed. python3-cykhash is already the newest version (2.0.0-4). python3-cykhash set to manually installed. findutils is already the newest version (4.10.0-4). libstdc++-15-dev is already the newest version (15.2.0-17). libstdc++-15-dev set to manually installed. python3-decorator is already the newest version (5.2.1-2). python3-decorator set to manually installed. libncursesw6 is already the newest version (6.6+20251231-1+b1). libncursesw6 set to manually installed. libpcre2-8-0 is already the newest version (10.46-1+b2). python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. python3-installer is already the newest version (1.0.1+dfsg1-1). python3-installer set to manually installed. groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. python3-build is already the newest version (1.4.0-1). python3-build set to manually installed. g++-15-riscv64-linux-gnu is already the newest version (15.2.0-17). g++-15-riscv64-linux-gnu set to manually installed. linux-libc-dev is already the newest version (7.0.9-1). linux-libc-dev set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. libpython3.13-minimal is already the newest version (3.13.12-1). libpython3.13-minimal set to manually installed. python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. libpython3.13-stdlib is already the newest version (3.13.12-1). libpython3.13-stdlib set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). libcrypt1 is already the newest version (1:4.5.1-1+b1). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. base-passwd is already the newest version (3.6.8). libpam-modules is already the newest version (1.7.0-5+b2). libpam0g is already the newest version (1.7.0-5+b2). dash is already the newest version (0.5.12-12). libsmartcols1 is already the newest version (2.42-6). python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. gettext-base is already the newest version (0.26-1). gettext-base set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). libselinux1 is already the newest version (3.10-1). make is already the newest version (4.4.1-3). make set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. python3.13-dev is already the newest version (3.13.12-1). python3.13-dev set to manually installed. python3-scipy is already the newest version (1.17.1-4). python3-scipy set to manually installed. python3.14-minimal is already the newest version (3.14.5-1). python3.14-minimal set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. cpp-15-riscv64-linux-gnu is already the newest version (15.2.0-17). cpp-15-riscv64-linux-gnu set to manually installed. bash is already the newest version (5.3-3). libgomp1 is already the newest version (16.1.0-1). libgomp1 set to manually installed. liblapack3 is already the newest version (3.12.1-7+b2). liblapack3 set to manually installed. libffi8 is already the newest version (3.5.2-4). libffi8 set to manually installed. libjs-sphinxdoc is already the newest version (9.1.0-4). libjs-sphinxdoc set to manually installed. libperl5.40 is already the newest version (5.40.1-7+b1). libperl5.40 set to manually installed. libpython3.14-stdlib is already the newest version (3.14.5-1). libpython3.14-stdlib set to manually installed. libjansson4 is already the newest version (2.14-2+b4). libjansson4 set to manually installed. libsimde-dev is already the newest version (0.8.4~rc3-5). libsimde-dev set to manually installed. dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. libblkid1 is already the newest version (2.42-6). m4 is already the newest version (1.4.21-1). m4 set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. python3-numpy-dev is already the newest version (1:2.4.4+ds-2). python3-numpy-dev set to manually installed. libgcc-s1 is already the newest version (16.1.0-1). autoconf is already the newest version (2.73-2). autoconf set to manually installed. libsystemd0 is already the newest version (261~rc1-1). libattr1 is already the newest version (1:2.5.2-4). python3-joblib is already the newest version (1.5.2-1). python3-joblib set to manually installed. gcc-16-base is already the newest version (16.1.0-1). help2man is already the newest version (1.49.3+b1). help2man set to manually installed. g++-riscv64-linux-gnu is already the newest version (4:15.2.0-5+b1). g++-riscv64-linux-gnu set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. gcc is already the newest version (4:15.2.0-5+b1). gcc set to manually installed. g++ is already the newest version (4:15.2.0-5+b1). g++ set to manually installed. automake is already the newest version (1:1.18.1-4). automake set to manually installed. bsdextrautils is already the newest version (2.42-6). bsdextrautils set to manually installed. python3-all is already the newest version (3.13.9-3+b1). python3-all set to manually installed. python3-threadpoolctl is already the newest version (3.1.0-1). python3-threadpoolctl set to manually installed. gcc-15-riscv64-linux-gnu is already the newest version (15.2.0-17). gcc-15-riscv64-linux-gnu set to manually installed. libelf1t64 is already the newest version (0.195-1). libelf1t64 set to manually installed. init-system-helpers is already the newest version (1.69). libubsan1 is already the newest version (16.1.0-1). libubsan1 set to manually installed. libc6-dev is already the newest version (2.42-16). libc6-dev set to manually installed. openssl is already the newest version (3.6.2-1). openssl set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. perl is already the newest version (5.40.1-7+b1). perl set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. debconf is already the newest version (1.5.92). binutils-riscv64-linux-gnu is already the newest version (2.46-3). binutils-riscv64-linux-gnu set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.axopccgjFG (Reading database ... 24544 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.axopccgjFG I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.axopccgjFG I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.axopccgjFG... I: success in 607.2720 seconds Downloading dependency 129 of 217: python3-typeguard:riscv64=4.4.4-2 Downloading dependency 130 of 217: libgfortran5:riscv64=16.1.0-1 Downloading dependency 131 of 217: libgdbm6t64:riscv64=1.26-1+b2 Downloading dependency 132 of 217: libgdbm-compat4t64:riscv64=1.26-1+b2 Downloading dependency 133 of 217: ncurses-base:riscv64=6.6+20251231-1 Downloading dependency 134 of 217: libsframe3:riscv64=2.46-3 Downloading dependency 135 of 217: libmagic-mgc:riscv64=1:5.46-5+b2 Downloading dependency 136 of 217: python3-pluggy:riscv64=1.6.0-2 Downloading dependency 137 of 217: libsqlite3-0:riscv64=3.46.1-9+b1 Downloading dependency 138 of 217: libgmp10:riscv64=2:6.3.0+dfsg-5+b2 Downloading dependency 139 of 217: libxml2-16:riscv64=2.15.2+dfsg-0.1 Downloading dependency 140 of 217: libfile-stripnondeterminism-perl:riscv64=1.15.0-1 Downloading dependency 141 of 217: python3-all-dev:riscv64=3.13.9-3+b1 Downloading dependency 142 of 217: cython3:riscv64=3.1.6+dfsg-2+b1 Downloading dependency 143 of 217: python3-cykhash:riscv64=2.0.0-4 Downloading dependency 144 of 217: findutils:riscv64=4.10.0-4 Downloading dependency 145 of 217: libstdc++-15-dev:riscv64=15.2.0-17 Downloading dependency 146 of 217: python3-decorator:riscv64=5.2.1-2 Downloading dependency 147 of 217: libncursesw6:riscv64=6.6+20251231-1+b1 Downloading dependency 148 of 217: libpcre2-8-0:riscv64=10.46-1+b2 Downloading dependency 149 of 217: python3-pkg-resources:riscv64=78.1.1-0.1 Downloading dependency 150 of 217: python3-installer:riscv64=1.0.1+dfsg1-1 Downloading dependency 151 of 217: groff-base:riscv64=1.24.1-1 Downloading dependency 152 of 217: python3-build:riscv64=1.4.0-1 Downloading dependency 153 of 217: g++-15-riscv64-linux-gnu:riscv64=15.2.0-17 Downloading dependency 154 of 217: linux-libc-dev:riscv64=7.0.9-1 Downloading dependency 155 of 217: libdpkg-perl:riscv64=1.23.7 Downloading dependency 156 of 217: libpython3.13-minimal:riscv64=3.13.12-1 Downloading dependency 157 of 217: python3-more-itertools:riscv64=10.8.0-1 Downloading dependency 158 of 217: libpython3.13-stdlib:riscv64=3.13.12-1 Downloading dependency 159 of 217: libaudit1:riscv64=1:4.1.2-1+b1 Downloading dependency 160 of 217: libcrypt1:riscv64=1:4.5.1-1+b1 Downloading dependency 161 of 217: zlib1g-dev:riscv64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 162 of 217: base-passwd:riscv64=3.6.8 Downloading dependency 163 of 217: libpam-modules:riscv64=1.7.0-5+b2 Downloading dependency 164 of 217: libpam0g:riscv64=1.7.0-5+b2 Downloading dependency 165 of 217: dash:riscv64=0.5.12-12 Downloading dependency 166 of 217: libsmartcols1:riscv64=2.42-6 Downloading dependency 167 of 217: python3-zipp:riscv64=3.23.0-1 Downloading dependency 168 of 217: gettext-base:riscv64=0.26-1 Downloading dependency 169 of 217: libdb5.3t64:riscv64=5.3.28+dfsg2-11+b1 Downloading dependency 170 of 217: libselinux1:riscv64=3.10-1 Downloading dependency 171 of 217: make:riscv64=4.4.1-3 Downloading dependency 172 of 217: python3-autocommand:riscv64=2.2.2-4 Downloading dependency 173 of 217: python3.13-dev:riscv64=3.13.12-1 Downloading dependency 174 of 217: python3-scipy:riscv64=1.17.1-4 Downloading dependency 175 of 217: python3.14-minimal:riscv64=3.14.5-1 Downloading dependency 176 of 217: dh-autoreconf:riscv64=22 Downloading dependency 177 of 217: cpp-15-riscv64-linux-gnu:riscv64=15.2.0-17 Downloading dependency 178 of 217: bash:riscv64=5.3-3 Downloading dependency 179 of 217: libgomp1:riscv64=16.1.0-1 Downloading dependency 180 of 217: liblapack3:riscv64=3.12.1-7+b2 Downloading dependency 181 of 217: libffi8:riscv64=3.5.2-4 Downloading dependency 182 of 217: libjs-sphinxdoc:riscv64=9.1.0-4 Downloading dependency 183 of 217: libperl5.40:riscv64=5.40.1-7+b1 Downloading dependency 184 of 217: libpython3.14-stdlib:riscv64=3.14.5-1 Downloading dependency 185 of 217: libjansson4:riscv64=2.14-2+b4 Downloading dependency 186 of 217: libsimde-dev:riscv64=0.8.4~rc3-5 Downloading dependency 187 of 217: dpkg-dev:riscv64=1.23.7 Downloading dependency 188 of 217: libblkid1:riscv64=2.42-6 Downloading dependency 189 of 217: m4:riscv64=1.4.21-1 Downloading dependency 190 of 217: netbase:riscv64=6.5 Downloading dependency 191 of 217: python3-numpy-dev:riscv64=1:2.4.4+ds-2 Downloading dependency 192 of 217: libgcc-s1:riscv64=16.1.0-1 Downloading dependency 193 of 217: autoconf:riscv64=2.73-2 Downloading dependency 194 of 217: libsystemd0:riscv64=261~rc1-1 Downloading dependency 195 of 217: libattr1:riscv64=1:2.5.2-4 Downloading dependency 196 of 217: python3-joblib:riscv64=1.5.2-1 Downloading dependency 197 of 217: gcc-16-base:riscv64=16.1.0-1 Downloading dependency 198 of 217: help2man:riscv64=1.49.3+b1 Downloading dependency 199 of 217: g++-riscv64-linux-gnu:riscv64=4:15.2.0-5+b1 Downloading dependency 200 of 217: patch:riscv64=2.8-2 Downloading dependency 201 of 217: gcc:riscv64=4:15.2.0-5+b1 Downloading dependency 202 of 217: g++:riscv64=4:15.2.0-5+b1 Downloading dependency 203 of 217: automake:riscv64=1:1.18.1-4 Downloading dependency 204 of 217: bsdextrautils:riscv64=2.42-6 Downloading dependency 205 of 217: python3-all:riscv64=3.13.9-3+b1 Downloading dependency 206 of 217: python3-threadpoolctl:riscv64=3.1.0-1 Downloading dependency 207 of 217: gcc-15-riscv64-linux-gnu:riscv64=15.2.0-17 Downloading dependency 208 of 217: libelf1t64:riscv64=0.195-1 Downloading dependency 209 of 217: init-system-helpers:riscv64=1.69 Downloading dependency 210 of 217: libubsan1:riscv64=16.1.0-1 Downloading dependency 211 of 217: libc6-dev:riscv64=2.42-16 Downloading dependency 212 of 217: openssl:riscv64=3.6.2-1 Downloading dependency 213 of 217: libuchardet0:riscv64=0.0.8-2+b2 Downloading dependency 214 of 217: perl:riscv64=5.40.1-7+b1 Downloading dependency 215 of 217: sensible-utils:riscv64=0.0.26 Downloading dependency 216 of 217: debconf:riscv64=1.5.92 Downloading dependency 217 of 217: binutils-riscv64-linux-gnu:riscv64=2.46-3 env --chdir=/srv/rebuilderd/tmp/rebuilderdX8jgQ6/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1778749244 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildkjrtTU/debrebuild.sbuildrc.ZKozAmW3rDhq sbuild --build=riscv64 --host=riscv64 --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildkjrtTU/debrebuild.tar.bNYXK1rewZ3P --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=macs-3.0.4 /srv/rebuilderd/tmp/rebuilderdX8jgQ6/inputs/macs_3.0.4-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on localhost +==============================================================================+ | macs 3.0.4-1 (riscv64) Mon, 01 Jun 2026 10:30:42 +0000 | +==============================================================================+ Package: macs Version: 3.0.4-1 Source Version: 3.0.4-1 Distribution: unstable Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildkjrtTU/debrebuild.tar.bNYXK1rewZ3P to /srv/rebuilderd/tmp/tmp.sbuild.lAWqKmGTFb... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Mon, 01 Jun 2026 10:31:37 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdX8jgQ6/inputs/macs_3.0.4-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdX8jgQ6/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 01 Jun 2026 10:31:50 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, python3-numpy-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, python3-numpy-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-kFsKSk/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Mon, 01 Jun 2026 10:32:15 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment Mon, 01 Jun 2026 10:32:18 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.90+deb13.1-riscv64 #1 SMP Debian 6.12.90-2 (2026-05-27) riscv64 (riscv64) Toolchain package versions: binutils_2.46-3 dpkg-dev_1.23.7 g++-15_15.2.0-17 gcc-15_15.2.0-17 libc6-dev_2.42-16 libstdc++-15-dev_15.2.0-17 libstdc++6_16.1.0-1 linux-libc-dev_7.0.9-1 Package versions: autoconf_2.73-2 automake_1:1.18.1-4 autopoint_0.26-1 autotools-dev_20240727.1+nmu1 base-files_14.0 base-passwd_3.6.8 bash_5.3-3 bc_1.07.1-4 binutils_2.46-3 binutils-common_2.46-3 binutils-riscv64-linux-gnu_2.46-3 bsdextrautils_2.42-6 build-essential_12.12 bzip2_1.0.8-6+b2 ca-certificates_20260223 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.2.0-17 cpp-15-riscv64-linux-gnu_15.2.0-17 cpp-riscv64-linux-gnu_4:15.2.0-5+b1 cython3_3.1.6+dfsg-2+b1 dash_0.5.12-12 debconf_1.5.92 debhelper_13.31 debianutils_5.23.2 dh-autoreconf_22 dh-python_7.20260524 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 file_1:5.46-5+b2 findutils_4.10.0-4 g++_4:15.2.0-5+b1 g++-15_15.2.0-17 g++-15-riscv64-linux-gnu_15.2.0-17 g++-riscv64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.2.0-17 gcc-15-base_15.2.0-17 gcc-15-riscv64-linux-gnu_15.2.0-17 gcc-16-base_16.1.0-1 gcc-riscv64-linux-gnu_4:15.2.0-5+b1 gettext_0.26-1 gettext-base_0.26-1 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 help2man_1.49.3+b1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-3 libarchive-zip-perl_1.68-1 libasan8_16.1.0-1 libatomic1_16.1.0-1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.46-3 libblas3_3.12.1-7+b2 libblkid1_2.42-6 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-16 libc-dev-bin_2.42-16 libc-gconv-modules-extra_2.42-16 libc6_2.42-16 libc6-dev_2.42-16 libcap-ng0_0.9.3-1 libcc1-0_16.1.0-1 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.46-3 libctf0_2.46-3 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_13.31 libdpkg-perl_1.23.7 libelf1t64_0.195-1 libexpat1_2.8.1-1 libexpat1-dev_2.8.1-1 libffi8_3.5.2-4 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-17 libgcc-s1_16.1.0-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran5_16.1.0-1 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.1.0-1 libgprofng0_2.46-3 libisl23_0.27-2 libitm1_16.1.0-1 libjansson4_2.14-2+b4 libjs-sphinxdoc_9.1.0-4 liblapack3_3.12.1-7+b2 liblocale-gettext-perl_1.07-10 liblsan0_16.1.0-1 liblzma5_5.8.3-1 libmagic-mgc_1:5.46-5+b2 libmagic1t64_1:5.46-5+b2 libmd0_1.2.0-1 libmount1_2.42-6 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20251231-1+b1 libpam-modules_1.7.0-5+b2 libpam-modules-bin_1.7.0-5+b2 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5+b2 libpcre2-8-0_10.46-1+b2 libperl5.40_5.40.1-7+b1 libpipeline1_1.5.8-3 libproc2-0_2:4.0.4-9+b2 libpython3-all-dev_3.13.9-3+b1 libpython3-dev_3.13.9-3+b1 libpython3-stdlib_3.13.9-3+b1 libpython3.13_3.13.12-1 libpython3.13-dev_3.13.12-1 libpython3.13-minimal_3.13.12-1 libpython3.13-stdlib_3.13.12-1 libpython3.14_3.14.5-1 libpython3.14-dev_3.14.5-1 libpython3.14-minimal_3.14.5-1 libpython3.14-stdlib_3.14.5-1 libqhull-r8.0_2020.2-9 libreadline8t64_8.3-4 libselinux1_3.10-1 libsframe3_2.46-3 libsimde-dev_0.8.4~rc3-5 libsmartcols1_2.42-6 libsqlite3-0_3.46.1-9+b1 libssl3t64_3.6.2-1 libstdc++-15-dev_15.2.0-17 libstdc++6_16.1.0-1 libsystemd0_261~rc1-1 libtinfo6_6.6+20251231-1+b1 libtool_2.5.4-11 libtsan2_16.1.0-1 libubsan1_16.1.0-1 libuchardet0_0.0.8-2+b2 libudev1_261~rc1-1 libunistring5_1.4.2-1 libuuid1_2.42-6 libxml2-16_2.15.2+dfsg-0.1 libzstd1_1.5.7+dfsg-3+b2 linux-libc-dev_7.0.9-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 media-types_14.0.0 ncurses-base_6.6+20251231-1 ncurses-bin_6.6+20251231-1+b1 netbase_6.5 openssl_3.6.2-1 openssl-provider-legacy_3.6.2-1 patch_2.8-2 perl_5.40.1-7+b1 perl-base_5.40.1-7+b1 perl-modules-5.40_5.40.1-7 po-debconf_1.0.22 procps_2:4.0.4-9+b2 pybuild-plugin-pyproject_7.20260524 python3_3.13.9-3+b1 python3-all_3.13.9-3+b1 python3-all-dev_3.13.9-3+b1 python3-autocommand_2.2.2-4 python3-build_1.4.0-1 python3-cykhash_2.0.0-4 python3-decorator_5.2.1-2 python3-dev_3.13.9-3+b1 python3-hmmlearn_0.3.3-1 python3-inflect_7.5.0-1 python3-iniconfig_2.1.0-2 python3-installer_1.0.1+dfsg1-1 python3-jaraco.context_6.0.1-2 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-joblib_1.5.2-1 python3-minimal_3.13.9-3+b1 python3-more-itertools_10.8.0-1 python3-numpy_1:2.4.4+ds-2 python3-numpy-dev_1:2.4.4+ds-2 python3-packaging_26.0-1 python3-pip_26.1.1+dfsg-1 python3-pkg-resources_78.1.1-0.1 python3-pluggy_1.6.0-2 python3-pygments_2.19.2+dfsg-1 python3-pyproject-hooks_1.2.0-1 python3-pytest_9.0.3-1 python3-scipy_1.17.1-4 python3-setuptools_78.1.1-0.1 python3-sklearn_1.8.0+dfsg-4 python3-sklearn-lib_1.8.0+dfsg-4 python3-threadpoolctl_3.1.0-1 python3-typeguard_4.4.4-2 python3-typing-extensions_4.15.0-2 python3-wheel_0.47.0-1 python3-zipp_3.23.0-1 python3.13_3.13.12-1 python3.13-dev_3.13.12-1 python3.13-minimal_3.13.12-1 python3.14_3.14.5-1 python3.14-dev_3.14.5-1 python3.14-minimal_3.14.5-1 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sed_4.9-3 sensible-utils_0.0.26 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 tzdata_2026b-1 util-linux_2.42-6 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Mon, 01 Jun 2026 10:32:18 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 3.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, python3-numpy-dev Package-List: macs deb science optional arch=any Checksums-Sha1: e6265ce4bf0e670ff5252543ebcf7474f2bd7c1d 200470087 macs_3.0.4.orig.tar.gz e972f9e6655fc8cbd8822c572639bea9ad87058a 1268072 macs_3.0.4-1.debian.tar.xz Checksums-Sha256: e74ac701dbff16ea8dddc82d7431e8e6648a9fb2d99b8b7cd4fe6577f53692c8 200470087 macs_3.0.4.orig.tar.gz 3f3d8a7b24e90dd2b394e1c83e7f4144226aff0aae51b1e315543be27258180f 1268072 macs_3.0.4-1.debian.tar.xz Files: 0328e6d35f0f06645732f6fa9d20eb4f 200470087 macs_3.0.4.orig.tar.gz 659176576e9d93e7a7313bbb6fe84c5c 1268072 macs_3.0.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmoFqbEACgkQPCZ2P2xn 5uJ37w//U+jjxj598TdT6Z/9whLbhcwgMZDmHd6351JqnTkNhbOcrcBXFCMt1RYQ F7VVpekJ1ZyNbCvV7Q5OqUsu2j/Zvl6zDBOjj3oR3ZM+oxu7nV49YPcmtkRCqp1B cyFz2cJHvJewsjQKcmELXitrNSEw4mrd3tzUBRGmU6AucQQgSIqV3glxQ08bq+rr Vw3THWPB+yFTSPP/xqGU5h3Z3hm+Bv13oikW01n5i3KO+HX/1CzuqzhL6rCl4yum pCWQ4XnokLo/WYTORs+0BFT2LVPscmoXg++ie/bpL2528ONHEsjKt02pkGWJZpPU Z05RNU7soUD9ziJ0QMOWNIo14hCUCjjxJbw3HSahjjiB5MI1eJElawpECZa2YZKv h34O46ftQsIPRp5RLzWGsk1IW/GzV33zu/0ZL7K0/3daPRkJRP+geC9nC7JfBINV rHGUCuEhVOKkajrBApp2K78SmbL3LJJmYrbTrnOlIAB5zFUOrIGbBpmIPNu/2nxy sT3DyJWi7FZKWogSBpMCvL7i72NsIs2+PGyqzBIcFboF+jK06mmq188RF/Q5Ax8D k691ldWKdmN4+8SMdSAgNWmkbyxKjus91/27lmTizXcgmJI8UOt2klN3lA+4mwqd iX9gLWUwwkigLh2UwyzhdOjsYMJpZWnGkZVfDI1y7aMvqfPkiRo= =4T3t -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./macs_3.0.4-1.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./macs_3.0.4-1.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting macs in /build/reproducible-path/macs-3.0.4 dpkg-source: info: unpacking macs_3.0.4.orig.tar.gz dpkg-source: info: unpacking macs_3.0.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying keep_debug dpkg-source: info: applying simde.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1778749244 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 3.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 dpkg-source: info: using options from /build/reproducible-path/macs-3.0.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/macs-3.0.4' for pyx in $(find MACS3/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3 * Building wheel... warning: MACS3/Signal/PairedEndTrack.py:367:15: Unknown type declaration 'cnp.void' in annotation, ignoring warning: MACS3/Signal/PairedEndTrack.py:1611:15: Unknown type declaration 'cnp.void' in annotation, ignoring Compiling MACS3/Signal/HMMR_EM.py because it changed. Compiling MACS3/Signal/HMMR_Signal_Processing.py because it changed. Compiling MACS3/Signal/HMMR_HMM.py because it changed. Compiling MACS3/Signal/Prob.py because it changed. Compiling MACS3/Signal/Region.py because it changed. Compiling MACS3/Signal/Pileup.py because it changed. Compiling MACS3/Signal/PileupV2.py because it changed. Compiling MACS3/Signal/PeakModel.py because it changed. Compiling MACS3/Signal/PeakDetect.py because it changed. Compiling MACS3/Signal/SignalProcessing.py because it changed. Compiling MACS3/Signal/FixWidthTrack.py because it changed. Compiling MACS3/Signal/PairedEndTrack.py because it changed. Compiling MACS3/Signal/BedGraph.py because it changed. Compiling MACS3/Signal/ScoreTrack.py because it changed. Compiling MACS3/Signal/CallPeakUnit.py because it changed. Compiling MACS3/Signal/VariantStat.py because it changed. Compiling MACS3/Signal/ReadAlignment.py because it changed. Compiling MACS3/Signal/RACollection.py because it changed. Compiling MACS3/Signal/UnitigRACollection.py because it changed. Compiling MACS3/Signal/PosReadsInfo.py because it changed. Compiling MACS3/Signal/PeakVariants.py because it changed. Compiling MACS3/IO/Parser.py because it changed. Compiling MACS3/IO/PeakIO.py because it changed. Compiling MACS3/IO/BedGraphIO.py because it changed. Compiling MACS3/IO/BAM.py because it changed. [ 1/25] Cythonizing MACS3/IO/BAM.py [ 2/25] Cythonizing MACS3/IO/BedGraphIO.py [ 3/25] Cythonizing MACS3/IO/Parser.py [ 4/25] Cythonizing MACS3/IO/PeakIO.py [ 5/25] Cythonizing MACS3/Signal/BedGraph.py [ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.py [ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.py [ 8/25] Cythonizing MACS3/Signal/HMMR_EM.py [ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.py [10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.py [11/25] Cythonizing MACS3/Signal/PairedEndTrack.py [12/25] Cythonizing MACS3/Signal/PeakDetect.py [13/25] Cythonizing MACS3/Signal/PeakModel.py [14/25] Cythonizing MACS3/Signal/PeakVariants.py [15/25] Cythonizing MACS3/Signal/Pileup.py [16/25] Cythonizing MACS3/Signal/PileupV2.py [17/25] Cythonizing MACS3/Signal/PosReadsInfo.py [18/25] Cythonizing MACS3/Signal/Prob.py [19/25] Cythonizing MACS3/Signal/RACollection.py [20/25] Cythonizing MACS3/Signal/ReadAlignment.py [21/25] Cythonizing MACS3/Signal/Region.py [22/25] Cythonizing MACS3/Signal/ScoreTrack.py [23/25] Cythonizing MACS3/Signal/SignalProcessing.py [24/25] Cythonizing MACS3/Signal/UnitigRACollection.py [25/25] Cythonizing MACS3/Signal/VariantStat.py running bdist_wheel running build running build_py creating build/lib.linux-riscv64-cpython-314/MACS3 copying MACS3/__init__.py -> build/lib.linux-riscv64-cpython-314/MACS3 creating build/lib.linux-riscv64-cpython-314/MACS3/IO copying MACS3/IO/Parser.py -> build/lib.linux-riscv64-cpython-314/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-riscv64-cpython-314/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-riscv64-cpython-314/MACS3/IO copying MACS3/IO/BAM.py -> build/lib.linux-riscv64-cpython-314/MACS3/IO copying MACS3/IO/BedGraphIO.py -> build/lib.linux-riscv64-cpython-314/MACS3/IO copying MACS3/IO/PeakIO.py -> build/lib.linux-riscv64-cpython-314/MACS3/IO creating build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/ReadAlignment.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/SignalProcessing.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/HMMR_Signal_Processing.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/PeakVariants.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/CallPeakUnit.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/PeakModel.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/VariantStat.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/Pileup.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/PeakDetect.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/RACollection.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/HMMR_HMM.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/PosReadsInfo.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/PairedEndTrack.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/Region.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/UnitigRACollection.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/HMMR_EM.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/ScoreTrack.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/BedGraph.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/PileupV2.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/FixWidthTrack.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/Prob.py -> build/lib.linux-riscv64-cpython-314/MACS3/Signal creating build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-riscv64-cpython-314/MACS3/Commands creating build/lib.linux-riscv64-cpython-314/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-riscv64-cpython-314/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-riscv64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-riscv64-cpython-314/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-riscv64-cpython-314/MACS3/Utilities running egg_info creating MACS3.egg-info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt writing manifest file 'MACS3.egg-info/SOURCES.txt' dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no files found matching '*.pyx' under directory 'MACS3' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' creating build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/bfc.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/bseq.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/bubble.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/example.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/fml.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/htab.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/htab.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/internal.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/khash.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kmer.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kseq.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/ksort.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kstring.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kthread.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/kvec.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mag.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mag.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/misc.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rle.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rle.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rope.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/rope.h -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/fermi-lite/unitig.c -> build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite copying MACS3/Signal/RACollection.pxd -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/cPosValCalculation.c -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/cPosValCalculation.h -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/cPosValCalculation.pxd -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/swalign.c -> build/lib.linux-riscv64-cpython-314/MACS3/Signal copying MACS3/Signal/swalign.h -> build/lib.linux-riscv64-cpython-314/MACS3/Signal running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-riscv64-cpython-314/MACS3/Signal building 'MACS3.Signal.HMMR_Signal_Processing' extension building 'MACS3.Signal.HMMR_HMM' extension building 'MACS3.Signal.Prob' extension creating build/temp.linux-riscv64-cpython-314/MACS3/Signal riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/HMMR_EM.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/HMMR_HMM.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Prob.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/Prob.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/HMMR_HMM.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-riscv64-linux-gnu.so building 'MACS3.Signal.Region' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/Region.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/Region.o -w -O3 building 'MACS3.Signal.Pileup' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/Pileup.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/Pileup.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/HMMR_EM.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/Prob.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/Prob.cpython-314-riscv64-linux-gnu.so building 'MACS3.Signal.PileupV2' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PileupV2.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/PileupV2.o -w -O3 building 'MACS3.Signal.PeakModel' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PeakModel.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/PeakModel.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/cPosValCalculation.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/PileupV2.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/PileupV2.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/Pileup.o build/temp.linux-riscv64-cpython-314/MACS3/Signal/cPosValCalculation.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/Pileup.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/Region.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/Region.cpython-314-riscv64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/PeakDetect.o -w -O3 building 'MACS3.Signal.SignalProcessing' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/SignalProcessing.o -w -O3 building 'MACS3.Signal.FixWidthTrack' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/FixWidthTrack.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/PeakModel.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/PeakModel.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/SignalProcessing.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/PeakDetect.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-riscv64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/PairedEndTrack.o -w -O3 building 'MACS3.Signal.BedGraph' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/BedGraph.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/BedGraph.o -w -O3 building 'MACS3.Signal.ScoreTrack' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/ScoreTrack.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/FixWidthTrack.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-riscv64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/CallPeakUnit.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/ScoreTrack.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/PairedEndTrack.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/CallPeakUnit.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/BedGraph.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/BedGraph.cpython-314-riscv64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/VariantStat.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/VariantStat.o -w -O3 building 'MACS3.Signal.ReadAlignment' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/ReadAlignment.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/VariantStat.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/VariantStat.cpython-314-riscv64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/RACollection.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP building 'MACS3.Signal.UnitigRACollection' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/UnitigRACollection.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/ReadAlignment.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-riscv64-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.14 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/PosReadsInfo.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/Signal/swalign.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP building 'MACS3.Signal.PeakVariants' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-riscv64-cpython-314/MACS3/Signal/PeakVariants.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/UnitigRACollection.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/htab.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP building 'MACS3.IO.Parser' extension creating build/temp.linux-riscv64-cpython-314/MACS3/IO riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/Parser.c -o build/temp.linux-riscv64-cpython-314/MACS3/IO/Parser.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mag.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/misc.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rle.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/rope.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/PosReadsInfo.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.14 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/RACollection.o build/temp.linux-riscv64-cpython-314/MACS3/Signal/swalign.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/bfc.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/bseq.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/bubble.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/htab.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/ksw.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/kthread.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/mag.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/misc.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/mrope.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/rld0.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/rle.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/rope.o build/temp.linux-riscv64-cpython-314/MACS3/fermi-lite/unitig.o -L/usr/lib/riscv64-linux-gnu -lm -lz -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/RACollection.cpython-314-riscv64-linux-gnu.so building 'MACS3.IO.PeakIO' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/PeakIO.c -o build/temp.linux-riscv64-cpython-314/MACS3/IO/PeakIO.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/Signal/PeakVariants.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-riscv64-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-riscv64-cpython-314/MACS3/IO/BedGraphIO.o -w -O3 building 'MACS3.IO.BAM' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.14 -c MACS3/IO/BAM.c -o build/temp.linux-riscv64-cpython-314/MACS3/IO/BAM.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/IO/BedGraphIO.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/IO/BAM.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-314/MACS3/IO/BAM.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/IO/Parser.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/IO/Parser.cpython-314-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-314/MACS3/IO/PeakIO.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-314/MACS3/IO/PeakIO.cpython-314-riscv64-linux-gnu.so running build_scripts creating build/scripts-3.14 copying and adjusting bin/macs3 -> build/scripts-3.14 changing mode of build/scripts-3.14/macs3 from 644 to 755 installing to build/bdist.linux-riscv64/wheel running install running install_lib creating build/bdist.linux-riscv64/wheel creating build/bdist.linux-riscv64/wheel/MACS3 creating build/bdist.linux-riscv64/wheel/MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/ScoreTrack.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/RACollection.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/ReadAlignment.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/SignalProcessing.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/HMMR_HMM.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PeakVariants.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PeakVariants.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/swalign.c -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PosReadsInfo.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/CallPeakUnit.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/cPosValCalculation.c -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/Region.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PeakModel.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/VariantStat.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/Prob.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/HMMR_EM.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/cPosValCalculation.h -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/Pileup.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/CallPeakUnit.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PeakDetect.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PairedEndTrack.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/FixWidthTrack.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/cPosValCalculation.pxd -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/RACollection.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/UnitigRACollection.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/BedGraph.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/RACollection.pxd -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PeakDetect.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/Pileup.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/swalign.h -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PileupV2.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/HMMR_HMM.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PosReadsInfo.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/SignalProcessing.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PairedEndTrack.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/HMMR_Signal_Processing.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PeakModel.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/Region.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/UnitigRACollection.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/HMMR_EM.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/ReadAlignment.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/ScoreTrack.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/BedGraph.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/PileupV2.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/FixWidthTrack.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/Prob.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-314/MACS3/Signal/VariantStat.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal creating build/bdist.linux-riscv64/wheel/MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-314/MACS3/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3 creating build/bdist.linux-riscv64/wheel/MACS3/Utilities copying build/lib.linux-riscv64-cpython-314/MACS3/Utilities/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3/Utilities copying build/lib.linux-riscv64-cpython-314/MACS3/Utilities/OptValidator.py -> build/bdist.linux-riscv64/wheel/./MACS3/Utilities copying build/lib.linux-riscv64-cpython-314/MACS3/Utilities/Constants.py -> build/bdist.linux-riscv64/wheel/./MACS3/Utilities copying build/lib.linux-riscv64-cpython-314/MACS3/Utilities/Logger.py -> build/bdist.linux-riscv64/wheel/./MACS3/Utilities creating build/bdist.linux-riscv64/wheel/MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/khash.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/rle.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/ksort.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/kseq.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/kmer.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/kstring.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/bfc.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/bseq.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/misc.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/example.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/rope.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/mrope.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/htab.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/internal.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/bubble.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/ksw.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/rope.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/htab.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/rle.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/fml.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/rld0.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/kthread.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/mag.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/rld0.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/mag.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/kvec.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/unitig.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/mrope.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-314/MACS3/fermi-lite/ksw.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite creating build/bdist.linux-riscv64/wheel/MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/Parser.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/Parser.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/OutputWriter.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/BAM.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/BAM.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/BedGraphIO.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/PeakIO.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/PeakIO.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-314/MACS3/IO/BedGraphIO.cpython-314-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/IO running install_egg_info Copying MACS3.egg-info to build/bdist.linux-riscv64/wheel/./MACS3-3.0.4.egg-info running install_scripts creating build/bdist.linux-riscv64/wheel/macs3-3.0.4.data/scripts copying build/scripts-3.14/macs3 -> build/bdist.linux-riscv64/wheel/macs3-3.0.4.data/scripts changing mode of build/bdist.linux-riscv64/wheel/macs3-3.0.4.data/scripts/macs3 to 755 creating build/bdist.linux-riscv64/wheel/macs3-3.0.4.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/.tmp-8j7ezbhz/macs3-3.0.4-cp314-cp314-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/IO/BAM.py' adding 'MACS3/IO/BedGraphIO.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.py' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/IO/Parser.py' adding 'MACS3/IO/PeakIO.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/IO/PeakIO.py' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/BedGraph.py' adding 'MACS3/Signal/CallPeakUnit.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.py' adding 'MACS3/Signal/FixWidthTrack.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.py' adding 'MACS3/Signal/HMMR_EM.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.py' adding 'MACS3/Signal/HMMR_HMM.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.py' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.py' adding 'MACS3/Signal/PairedEndTrack.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.py' adding 'MACS3/Signal/PeakDetect.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.py' adding 'MACS3/Signal/PeakModel.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.py' adding 'MACS3/Signal/PeakVariants.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.py' adding 'MACS3/Signal/Pileup.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/Pileup.py' adding 'MACS3/Signal/PileupV2.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.py' adding 'MACS3/Signal/PosReadsInfo.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.py' adding 'MACS3/Signal/Prob.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/Prob.py' adding 'MACS3/Signal/RACollection.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/RACollection.pxd' adding 'MACS3/Signal/RACollection.py' adding 'MACS3/Signal/ReadAlignment.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.py' adding 'MACS3/Signal/Region.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/Region.py' adding 'MACS3/Signal/ScoreTrack.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.py' adding 'MACS3/Signal/SignalProcessing.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.py' adding 'MACS3/Signal/UnitigRACollection.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.py' adding 'MACS3/Signal/VariantStat.cpython-314-riscv64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.py' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Signal/cPosValCalculation.c' adding 'MACS3/Signal/cPosValCalculation.h' adding 'MACS3/Signal/cPosValCalculation.pxd' adding 'MACS3/Signal/swalign.c' adding 'MACS3/Signal/swalign.h' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'MACS3/fermi-lite/bfc.c' adding 'MACS3/fermi-lite/bseq.c' adding 'MACS3/fermi-lite/bubble.c' adding 'MACS3/fermi-lite/example.c' adding 'MACS3/fermi-lite/fml.h' adding 'MACS3/fermi-lite/htab.c' adding 'MACS3/fermi-lite/htab.h' adding 'MACS3/fermi-lite/internal.h' adding 'MACS3/fermi-lite/khash.h' adding 'MACS3/fermi-lite/kmer.h' adding 'MACS3/fermi-lite/kseq.h' adding 'MACS3/fermi-lite/ksort.h' adding 'MACS3/fermi-lite/kstring.h' adding 'MACS3/fermi-lite/ksw.c' adding 'MACS3/fermi-lite/ksw.h' adding 'MACS3/fermi-lite/kthread.c' adding 'MACS3/fermi-lite/kvec.h' adding 'MACS3/fermi-lite/mag.c' adding 'MACS3/fermi-lite/mag.h' adding 'MACS3/fermi-lite/misc.c' adding 'MACS3/fermi-lite/mrope.c' adding 'MACS3/fermi-lite/mrope.h' adding 'MACS3/fermi-lite/rld0.c' adding 'MACS3/fermi-lite/rld0.h' adding 'MACS3/fermi-lite/rle.c' adding 'MACS3/fermi-lite/rle.h' adding 'MACS3/fermi-lite/rope.c' adding 'MACS3/fermi-lite/rope.h' adding 'MACS3/fermi-lite/unitig.c' adding 'macs3-3.0.4.data/scripts/macs3' adding 'macs3-3.0.4.dist-info/licenses/LICENSE' adding 'macs3-3.0.4.dist-info/METADATA' adding 'macs3-3.0.4.dist-info/WHEEL' adding 'macs3-3.0.4.dist-info/top_level.txt' adding 'macs3-3.0.4.dist-info/RECORD' removing build/bdist.linux-riscv64/wheel Successfully built macs3-3.0.4-cp314-cp314-linux_riscv64.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module I: pybuild plugin_pyproject:142: Building wheel for python3.13 with "build" module I: pybuild base:385: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3 * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-riscv64-cpython-313/MACS3 copying MACS3/__init__.py -> build/lib.linux-riscv64-cpython-313/MACS3 creating build/lib.linux-riscv64-cpython-313/MACS3/IO copying MACS3/IO/Parser.py -> build/lib.linux-riscv64-cpython-313/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-riscv64-cpython-313/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-riscv64-cpython-313/MACS3/IO copying MACS3/IO/BAM.py -> build/lib.linux-riscv64-cpython-313/MACS3/IO copying MACS3/IO/BedGraphIO.py -> build/lib.linux-riscv64-cpython-313/MACS3/IO copying MACS3/IO/PeakIO.py -> build/lib.linux-riscv64-cpython-313/MACS3/IO creating build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/ReadAlignment.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/SignalProcessing.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/HMMR_Signal_Processing.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/PeakVariants.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/CallPeakUnit.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/PeakModel.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/VariantStat.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/Pileup.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/PeakDetect.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/RACollection.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/HMMR_HMM.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/PosReadsInfo.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/PairedEndTrack.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/Region.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/UnitigRACollection.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/HMMR_EM.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/ScoreTrack.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/BedGraph.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/PileupV2.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/FixWidthTrack.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/Prob.py -> build/lib.linux-riscv64-cpython-313/MACS3/Signal creating build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-riscv64-cpython-313/MACS3/Commands creating build/lib.linux-riscv64-cpython-313/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-riscv64-cpython-313/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-riscv64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-riscv64-cpython-313/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-riscv64-cpython-313/MACS3/Utilities running egg_info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no files found matching '*.pyx' under directory 'MACS3' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' creating build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/bfc.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/bseq.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/bubble.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/example.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/fml.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/htab.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/htab.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/internal.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/khash.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kmer.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kseq.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/ksort.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kstring.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/ksw.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kthread.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/kvec.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mag.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mag.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/misc.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/mrope.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rld0.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rle.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rle.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rope.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/rope.h -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/fermi-lite/unitig.c -> build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite copying MACS3/Signal/RACollection.pxd -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/cPosValCalculation.c -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/cPosValCalculation.h -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/cPosValCalculation.pxd -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/swalign.c -> build/lib.linux-riscv64-cpython-313/MACS3/Signal copying MACS3/Signal/swalign.h -> build/lib.linux-riscv64-cpython-313/MACS3/Signal running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-riscv64-cpython-313/MACS3/Signal building 'MACS3.Signal.HMMR_HMM' extension building 'MACS3.Signal.HMMR_Signal_Processing' extension creating build/temp.linux-riscv64-cpython-313/MACS3/Signal building 'MACS3.Signal.Prob' extension creating build/temp.linux-riscv64-cpython-313/MACS3/Signal riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/HMMR_EM.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Prob.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/Prob.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/HMMR_HMM.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/HMMR_HMM.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-riscv64-linux-gnu.so building 'MACS3.Signal.Region' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/Region.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/Region.o -w -O3 building 'MACS3.Signal.Pileup' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/Pileup.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/Pileup.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/HMMR_EM.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/Prob.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/Prob.cpython-313-riscv64-linux-gnu.so building 'MACS3.Signal.PileupV2' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PileupV2.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/PileupV2.o -w -O3 building 'MACS3.Signal.PeakModel' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakModel.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/PeakModel.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/cPosValCalculation.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/PileupV2.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/PileupV2.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/Pileup.o build/temp.linux-riscv64-cpython-313/MACS3/Signal/cPosValCalculation.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/Pileup.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/Region.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/Region.cpython-313-riscv64-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/PeakDetect.o -w -O3 building 'MACS3.Signal.SignalProcessing' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/SignalProcessing.o -w -O3 building 'MACS3.Signal.FixWidthTrack' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/FixWidthTrack.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/PeakModel.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/PeakModel.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/SignalProcessing.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/PeakDetect.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-riscv64-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/PairedEndTrack.o -w -O3 building 'MACS3.Signal.BedGraph' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/BedGraph.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/BedGraph.o -w -O3 building 'MACS3.Signal.ScoreTrack' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/ScoreTrack.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/FixWidthTrack.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-riscv64-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/CallPeakUnit.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/ScoreTrack.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/PairedEndTrack.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/CallPeakUnit.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/BedGraph.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/BedGraph.cpython-313-riscv64-linux-gnu.so building 'MACS3.Signal.VariantStat' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/VariantStat.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/VariantStat.o -w -O3 building 'MACS3.Signal.ReadAlignment' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/ReadAlignment.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/VariantStat.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/VariantStat.cpython-313-riscv64-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/RACollection.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/ReadAlignment.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-riscv64-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/UnitigRACollection.o -w -O3 building 'MACS3.Signal.PosReadsInfo' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/riscv64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/PosReadsInfo.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/swalign.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP building 'MACS3.Signal.PeakVariants' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-riscv64-cpython-313/MACS3/Signal/PeakVariants.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/UnitigRACollection.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/htab.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP building 'MACS3.IO.Parser' extension creating build/temp.linux-riscv64-cpython-313/MACS3/IO riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/Parser.c -o build/temp.linux-riscv64-cpython-313/MACS3/IO/Parser.o -w -O3 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mag.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/misc.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rle.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/PosReadsInfo.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rope.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/RACollection.o build/temp.linux-riscv64-cpython-313/MACS3/Signal/swalign.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/bfc.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/bseq.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/bubble.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/htab.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/ksw.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/kthread.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/mag.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/misc.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/mrope.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/rld0.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/rle.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/rope.o build/temp.linux-riscv64-cpython-313/MACS3/fermi-lite/unitig.o -L/usr/lib/riscv64-linux-gnu -lm -lz -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/RACollection.cpython-313-riscv64-linux-gnu.so building 'MACS3.IO.PeakIO' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/PeakIO.c -o build/temp.linux-riscv64-cpython-313/MACS3/IO/PeakIO.o -w -O3 building 'MACS3.IO.BedGraphIO' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-riscv64-cpython-313/MACS3/IO/BedGraphIO.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/Signal/PeakVariants.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-riscv64-linux-gnu.so building 'MACS3.IO.BAM' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BAM.c -o build/temp.linux-riscv64-cpython-313/MACS3/IO/BAM.o -w -O3 riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/IO/BedGraphIO.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/IO/BAM.o -L/usr/lib/riscv64-linux-gnu -lm -o build/lib.linux-riscv64-cpython-313/MACS3/IO/BAM.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/IO/Parser.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/IO/Parser.cpython-313-riscv64-linux-gnu.so riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/macs-3.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/MACS3/IO/PeakIO.o -L/usr/lib/riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-313/MACS3/IO/PeakIO.cpython-313-riscv64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting bin/macs3 -> build/scripts-3.13 changing mode of build/scripts-3.13/macs3 from 644 to 755 installing to build/bdist.linux-riscv64/wheel running install running install_lib creating build/bdist.linux-riscv64/wheel creating build/bdist.linux-riscv64/wheel/MACS3 creating build/bdist.linux-riscv64/wheel/MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/ReadAlignment.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/SignalProcessing.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PeakVariants.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/swalign.c -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PeakModel.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/CallPeakUnit.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/cPosValCalculation.c -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PeakModel.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/VariantStat.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/cPosValCalculation.h -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/RACollection.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/Pileup.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PeakDetect.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/VariantStat.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/Region.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/BedGraph.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PileupV2.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/cPosValCalculation.pxd -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/RACollection.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/RACollection.pxd -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/Prob.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/swalign.h -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/HMMR_HMM.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PosReadsInfo.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PairedEndTrack.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/Region.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/UnitigRACollection.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/HMMR_EM.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/Pileup.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/ScoreTrack.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/BedGraph.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PileupV2.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/FixWidthTrack.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/Prob.py -> build/bdist.linux-riscv64/wheel/./MACS3/Signal copying build/lib.linux-riscv64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/Signal creating build/bdist.linux-riscv64/wheel/MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-riscv64/wheel/./MACS3/Commands copying build/lib.linux-riscv64-cpython-313/MACS3/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3 creating build/bdist.linux-riscv64/wheel/MACS3/Utilities copying build/lib.linux-riscv64-cpython-313/MACS3/Utilities/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3/Utilities copying build/lib.linux-riscv64-cpython-313/MACS3/Utilities/OptValidator.py -> build/bdist.linux-riscv64/wheel/./MACS3/Utilities copying build/lib.linux-riscv64-cpython-313/MACS3/Utilities/Constants.py -> build/bdist.linux-riscv64/wheel/./MACS3/Utilities copying build/lib.linux-riscv64-cpython-313/MACS3/Utilities/Logger.py -> build/bdist.linux-riscv64/wheel/./MACS3/Utilities creating build/bdist.linux-riscv64/wheel/MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/khash.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/rle.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/ksort.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/kseq.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/kmer.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/kstring.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/bfc.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/bseq.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/misc.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/example.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/rope.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/mrope.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/htab.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/internal.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/bubble.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/ksw.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/rope.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/htab.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/rle.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/fml.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/rld0.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/kthread.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/mag.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/rld0.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/mag.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/kvec.h -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/unitig.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/mrope.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite copying build/lib.linux-riscv64-cpython-313/MACS3/fermi-lite/ksw.c -> build/bdist.linux-riscv64/wheel/./MACS3/fermi-lite creating build/bdist.linux-riscv64/wheel/MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/Parser.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/__init__.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/OutputWriter.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/BAM.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/BedGraphIO.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/PeakIO.py -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/BAM.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/Parser.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/IO copying build/lib.linux-riscv64-cpython-313/MACS3/IO/PeakIO.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./MACS3/IO running install_egg_info Copying MACS3.egg-info to build/bdist.linux-riscv64/wheel/./MACS3-3.0.4.egg-info running install_scripts creating build/bdist.linux-riscv64/wheel/macs3-3.0.4.data/scripts copying build/scripts-3.13/macs3 -> build/bdist.linux-riscv64/wheel/macs3-3.0.4.data/scripts changing mode of build/bdist.linux-riscv64/wheel/macs3-3.0.4.data/scripts/macs3 to 755 creating build/bdist.linux-riscv64/wheel/macs3-3.0.4.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3/.tmp-_coq8m07/macs3-3.0.4-cp313-cp313-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/IO/BAM.py' adding 'MACS3/IO/BedGraphIO.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.py' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/IO/Parser.py' adding 'MACS3/IO/PeakIO.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/IO/PeakIO.py' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/BedGraph.py' adding 'MACS3/Signal/CallPeakUnit.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.py' adding 'MACS3/Signal/FixWidthTrack.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.py' adding 'MACS3/Signal/HMMR_EM.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.py' adding 'MACS3/Signal/HMMR_HMM.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.py' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.py' adding 'MACS3/Signal/PairedEndTrack.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.py' adding 'MACS3/Signal/PeakDetect.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.py' adding 'MACS3/Signal/PeakModel.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/PeakModel.py' adding 'MACS3/Signal/PeakVariants.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.py' adding 'MACS3/Signal/Pileup.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/Pileup.py' adding 'MACS3/Signal/PileupV2.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/PileupV2.py' adding 'MACS3/Signal/PosReadsInfo.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.py' adding 'MACS3/Signal/Prob.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/Prob.py' adding 'MACS3/Signal/RACollection.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/RACollection.pxd' adding 'MACS3/Signal/RACollection.py' adding 'MACS3/Signal/ReadAlignment.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.py' adding 'MACS3/Signal/Region.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/Region.py' adding 'MACS3/Signal/ScoreTrack.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.py' adding 'MACS3/Signal/SignalProcessing.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.py' adding 'MACS3/Signal/UnitigRACollection.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.py' adding 'MACS3/Signal/VariantStat.cpython-313-riscv64-linux-gnu.so' adding 'MACS3/Signal/VariantStat.py' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Signal/cPosValCalculation.c' adding 'MACS3/Signal/cPosValCalculation.h' adding 'MACS3/Signal/cPosValCalculation.pxd' adding 'MACS3/Signal/swalign.c' adding 'MACS3/Signal/swalign.h' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'MACS3/fermi-lite/bfc.c' adding 'MACS3/fermi-lite/bseq.c' adding 'MACS3/fermi-lite/bubble.c' adding 'MACS3/fermi-lite/example.c' adding 'MACS3/fermi-lite/fml.h' adding 'MACS3/fermi-lite/htab.c' adding 'MACS3/fermi-lite/htab.h' adding 'MACS3/fermi-lite/internal.h' adding 'MACS3/fermi-lite/khash.h' adding 'MACS3/fermi-lite/kmer.h' adding 'MACS3/fermi-lite/kseq.h' adding 'MACS3/fermi-lite/ksort.h' adding 'MACS3/fermi-lite/kstring.h' adding 'MACS3/fermi-lite/ksw.c' adding 'MACS3/fermi-lite/ksw.h' adding 'MACS3/fermi-lite/kthread.c' adding 'MACS3/fermi-lite/kvec.h' adding 'MACS3/fermi-lite/mag.c' adding 'MACS3/fermi-lite/mag.h' adding 'MACS3/fermi-lite/misc.c' adding 'MACS3/fermi-lite/mrope.c' adding 'MACS3/fermi-lite/mrope.h' adding 'MACS3/fermi-lite/rld0.c' adding 'MACS3/fermi-lite/rld0.h' adding 'MACS3/fermi-lite/rle.c' adding 'MACS3/fermi-lite/rle.h' adding 'MACS3/fermi-lite/rope.c' adding 'MACS3/fermi-lite/rope.h' adding 'MACS3/fermi-lite/unitig.c' adding 'macs3-3.0.4.data/scripts/macs3' adding 'macs3-3.0.4.dist-info/licenses/LICENSE' adding 'macs3-3.0.4.dist-info/METADATA' adding 'macs3-3.0.4.dist-info/WHEEL' adding 'macs3-3.0.4.dist-info/top_level.txt' adding 'macs3-3.0.4.dist-info/RECORD' removing build/bdist.linux-riscv64/wheel Successfully built macs3-3.0.4-cp313-cp313-linux_riscv64.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.13 with "installer" module PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info \ --name "macs3 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs3" > debian/macs3.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmac3_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs3_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info --version-string="3.0.4" \ --include debian/macs3_${subcommand}-man-include \ "python3 bin/macs3 ${subcommand}" > \ debian/macs3_${subcommand}.1; done make[1]: Leaving directory '/build/reproducible-path/macs-3.0.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/macs-3.0.4' dh_auto_test I: pybuild base:385: cd /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build; python3.14 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.14.5, pytest-9.0.3, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 93 items test/test_BAMBAI.py ........... [ 11%] test/test_BedGraph.py .. [ 13%] test/test_BedGraphIO.py .. [ 16%] test/test_CallPeakUnit.py ....s [ 21%] test/test_FixWidthTrack.py .... [ 25%] test/test_HMMR_HMM.py s. [ 27%] test/test_HMMR_poisson.py .. [ 30%] test/test_PairedEndTrack.py ................ [ 47%] test/test_Parser.py .... [ 51%] test/test_PeakDetect.py ... [ 54%] test/test_PeakIO.py . [ 55%] test/test_PeakModel.py .ss [ 59%] test/test_Pileup.py .......... [ 69%] test/test_Prob.py ................ [ 87%] test/test_Region.py ..... [ 92%] test/test_ScoreTrack.py .... [ 96%] test/test_SignalProcessing.py .. [ 98%] test/test_online.py . [100%] ================== 89 passed, 4 skipped in 200.07s (0:03:20) =================== I: pybuild base:385: cd /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3/build; python3.13 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.13.12, pytest-9.0.3, pluggy-1.6.0 rootdir: /build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.13_MACS3/build configfile: pyproject.toml plugins: typeguard-4.4.4 collected 93 items test/test_BAMBAI.py ........... [ 11%] test/test_BedGraph.py .. [ 13%] test/test_BedGraphIO.py .. [ 16%] test/test_CallPeakUnit.py ....s [ 21%] test/test_FixWidthTrack.py .... [ 25%] test/test_HMMR_HMM.py s. [ 27%] test/test_HMMR_poisson.py .. [ 30%] test/test_PairedEndTrack.py ................ [ 47%] test/test_Parser.py .... [ 51%] test/test_PeakDetect.py ... [ 54%] test/test_PeakIO.py . [ 55%] test/test_PeakModel.py .ss [ 59%] test/test_Pileup.py .......... [ 69%] test/test_Prob.py ................ [ 87%] test/test_Region.py ..... [ 92%] test/test_ScoreTrack.py .... [ 96%] test/test_SignalProcessing.py .. [ 98%] test/test_online.py . [100%] ================== 89 passed, 4 skipped in 209.69s (0:03:29) =================== cd test && for PY3VER in 3.14 3.13; do \ export PATH=/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_${PY3VER}_MACS3/scripts:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_${PY3VER}_MACS3/build \ && ./cmdlinetest macs3.0.4-1-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 1.4 callpeak with fragment file w/ or w/o barcodes file 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 15.2 hmmratac load hmm model file 15.3 hmmratac scATAC test 16. search for errors in log files checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag_barcode.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_hmmratac/run_hmmratac_scatac.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking callpeak_frag run_callpeak_frag_barcode_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak ... success! Results are the same! 16.11.2 checking callpeak_frag run_callpeak_frag_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_callpeak_frag/run_callpeak_frag_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_peaks.narrowPeak ... success! Results are the same! 16.12.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.12.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.12.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.13.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.13.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.4-1-3.14_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.14.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.14.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.14.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.14.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.14.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.14.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.15.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.15.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.4-1-3.14_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.16.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.16.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.4-1-3.14_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.17.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.17.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.17.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.4-1-3.14_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.18.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.4-1-3.14_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.19.1 checking hmmratac hmmratac_scatac_test_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak ... success! Results are the same! 16.19.2 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.3 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.4 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.5 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.6 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.7 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.8 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 16.19.9 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.14_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak Traceback (most recent call last): File "/build/reproducible-path/macs-3.0.4/test/./jaccard.py", line 6, in from MACS3.Signal.Region import * File "/build/reproducible-path/macs-3.0.4/.pybuild/cpython3_3.14_MACS3/build/MACS3/Signal/Region.py", line 29, in from cython.cimports.cpython import bool File "", line 1360, in _find_and_load File "", line 1320, in _find_and_load_unlocked File "/usr/lib/python3/dist-packages/Cython/Shadow.py", line 649, in __getattr__ raise AttributeError(item) AttributeError: __spec__. Did you mean: '__doc__'? (standard_in) 1: syntax error ... failed! Results are different and Jaccard Index is (<0.99) 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 1.4 callpeak with fragment file w/ or w/o barcodes file 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 15.2 hmmratac load hmm model file 15.3 hmmratac scATAC test 16. search for errors in log files checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag_barcode.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_bedpe_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_hmm_model_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_load_training_regions_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_poisson.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_hmmratac/run_hmmratac_scatac.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... success! Results are different but Jaccard Index is 1.0 (>0.99) 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed ... success! Results are different but Jaccard Index is 1.0 (>0.99) 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed ... success! Results are different but Jaccard Index is 1.0 (>0.99) 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking callpeak_frag run_callpeak_frag_barcode_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_barcode_peaks.narrowPeak ... success! Results are the same! 16.11.2 checking callpeak_frag run_callpeak_frag_peaks.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_callpeak_frag/run_callpeak_frag_peaks.narrowPeak vs standard_results_callpeak_frag/run_callpeak_frag_peaks.narrowPeak ... success! Results are the same! 16.12.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.12.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.12.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.13.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.13.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.4-1-3.13_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.14.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.14.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.14.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.14.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.14.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.14.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.15.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.15.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.4-1-3.13_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.16.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.16.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.4-1-3.13_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.17.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.17.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.17.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.4-1-3.13_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.18.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.4-1-3.13_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.19.1 checking hmmratac hmmratac_scatac_test_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_scatac_test_accessible_regions.narrowPeak ... success! Results are the same! 16.19.2 checking hmmratac hmmratac_yeast500k_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.3 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.4 checking hmmratac hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_poisson_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 16.19.5 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.6 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.998389175257732 (>0.99) 16.19.7 checking hmmratac hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 16.19.8 checking hmmratac hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_hmm_model_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 16.19.9 checking hmmratac hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... checking the files: ../temp/macs3.0.4-1-3.13_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.9985550127296497 (>0.99) 18. brief speed test CPU time (mm:ss): 00:24:20 Max mem (KB): 272052 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.4' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/macs/ -a -O--buildsystem=pybuild I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir I: pybuild plugin_pyproject:199: Copying package built for python3.13 to destdir dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/macs-3.0.4' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.4' dh_python3 -a -O--buildsystem=pybuild I: dh_python3 tools:129: replacing shebang in debian/macs/usr/bin/macs3 dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_3.0.4-1_riscv64.deb'. dpkg-deb: building package 'macs' in '../macs_3.0.4-1_riscv64.deb'. dpkg-genbuildinfo --build=any -O../macs_3.0.4-1_riscv64.buildinfo dpkg-genchanges --build=any -O../macs_3.0.4-1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-source: info: using options from /build/reproducible-path/macs-3.0.4/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-06-01T15:39:55Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 01 Jun 2026 15:40:00 +0000 | +------------------------------------------------------------------------------+ macs_3.0.4-1_riscv64.changes: ----------------------------- Format: 1.8 Date: Thu, 14 May 2026 11:00:44 +0200 Source: macs Binary: macs macs-dbgsym Architecture: riscv64 Version: 3.0.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Changes: macs (3.0.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.7.4 (routine-update) * debputy lint --auto-fix (routine-update) * Refreshed patches, dropping one that is no longer applicable. * Add missing build dependency on python3-numpy-dev for command dh_numpy3. * Set upstream metadata fields: Documentation, Repository, Repository-Browse. * d/copyright: clarify with files are expat licensed Checksums-Sha1: 553c7b446ba3f30f6944a45d1117576320960a12 30470648 macs-dbgsym_3.0.4-1_riscv64.deb 921ed8502705e9a7936c26ebdad5e1f21f9f2cc5 7179 macs_3.0.4-1_riscv64.buildinfo 1aba7d00f14926ec7c796ba19c02ba594bf8a5d5 4534996 macs_3.0.4-1_riscv64.deb Checksums-Sha256: 10f538eb7b4c44604fbd80ffc84122b489539a59a49f0be756f808ff0d07d3bd 30470648 macs-dbgsym_3.0.4-1_riscv64.deb 9741e00b8f4df2a657bf6a4413d26143d7f31adbe260094d1132a3bdc7adf0d0 7179 macs_3.0.4-1_riscv64.buildinfo f055275450e1e5427a1c73a85323cef8c45cf4b6d183e723389c9d3796ca6aec 4534996 macs_3.0.4-1_riscv64.deb Files: cb2b19dc2f99d8bf1fd8daf8066a0530 30470648 debug optional macs-dbgsym_3.0.4-1_riscv64.deb 8bea3739caf219d464b2ab9f2b655718 7179 science optional macs_3.0.4-1_riscv64.buildinfo af3fbd625fb426a3dcb67f98c796cbf8 4534996 science optional macs_3.0.4-1_riscv64.deb +------------------------------------------------------------------------------+ | Buildinfo Mon, 01 Jun 2026 15:40:04 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: macs Binary: macs macs-dbgsym Architecture: riscv64 Version: 3.0.4-1 Checksums-Md5: cb2b19dc2f99d8bf1fd8daf8066a0530 30470648 macs-dbgsym_3.0.4-1_riscv64.deb af3fbd625fb426a3dcb67f98c796cbf8 4534996 macs_3.0.4-1_riscv64.deb Checksums-Sha1: 553c7b446ba3f30f6944a45d1117576320960a12 30470648 macs-dbgsym_3.0.4-1_riscv64.deb 1aba7d00f14926ec7c796ba19c02ba594bf8a5d5 4534996 macs_3.0.4-1_riscv64.deb Checksums-Sha256: 10f538eb7b4c44604fbd80ffc84122b489539a59a49f0be756f808ff0d07d3bd 30470648 macs-dbgsym_3.0.4-1_riscv64.deb f055275450e1e5427a1c73a85323cef8c45cf4b6d183e723389c9d3796ca6aec 4534996 macs_3.0.4-1_riscv64.deb Build-Origin: Debian Build-Architecture: riscv64 Build-Date: Mon, 01 Jun 2026 15:39:51 +0000 Build-Path: /build/reproducible-path/macs-3.0.4 Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.18.1-4), autopoint (= 0.26-1), autotools-dev (= 20240727.1+nmu1), base-files (= 14.0), base-passwd (= 3.6.8), bash (= 5.3-3), bc (= 1.07.1-4), binutils (= 2.46-3), binutils-common (= 2.46-3), binutils-riscv64-linux-gnu (= 2.46-3), bsdextrautils (= 2.42-6), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), ca-certificates (= 20260223), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.2.0-17), cpp-15-riscv64-linux-gnu (= 15.2.0-17), cpp-riscv64-linux-gnu (= 4:15.2.0-5+b1), cython3 (= 3.1.6+dfsg-2+b1), dash (= 0.5.12-12), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2), dh-autoreconf (= 22), dh-python (= 7.20260524), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), file (= 1:5.46-5+b2), findutils (= 4.10.0-4), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.2.0-17), g++-15-riscv64-linux-gnu (= 15.2.0-17), g++-riscv64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.2.0-17), gcc-15-base (= 15.2.0-17), gcc-15-riscv64-linux-gnu (= 15.2.0-17), gcc-16-base (= 16.1.0-1), gcc-riscv64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 0.26-1), gettext-base (= 0.26-1), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.13-1), help2man (= 1.49.3+b1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.1.0-1), libatomic1 (= 16.1.0-1), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libbinutils (= 2.46-3), libblas3 (= 3.12.1-7+b2), libblkid1 (= 2.42-6), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-16), libc-dev-bin (= 2.42-16), libc-gconv-modules-extra (= 2.42-16), libc6 (= 2.42-16), libc6-dev (= 2.42-16), libcap-ng0 (= 0.9.3-1), libcc1-0 (= 16.1.0-1), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46-3), libctf0 (= 2.46-3), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 13.31), libdpkg-perl (= 1.23.7), libelf1t64 (= 0.195-1), libexpat1 (= 2.8.1-1), libexpat1-dev (= 2.8.1-1), libffi8 (= 3.5.2-4), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-17), libgcc-s1 (= 16.1.0-1), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran5 (= 16.1.0-1), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.1.0-1), libgprofng0 (= 2.46-3), libisl23 (= 0.27-2), libitm1 (= 16.1.0-1), libjansson4 (= 2.14-2+b4), libjs-sphinxdoc (= 9.1.0-4), liblapack3 (= 3.12.1-7+b2), liblocale-gettext-perl (= 1.07-10), liblsan0 (= 16.1.0-1), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.46-5+b2), libmagic1t64 (= 1:5.46-5+b2), libmd0 (= 1.2.0-1), libmount1 (= 2.42-6), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20251231-1+b1), libpam-modules (= 1.7.0-5+b2), libpam-modules-bin (= 1.7.0-5+b2), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5+b2), libpcre2-8-0 (= 10.46-1+b2), libperl5.40 (= 5.40.1-7+b1), libpipeline1 (= 1.5.8-3), libproc2-0 (= 2:4.0.4-9+b2), libpython3-all-dev (= 3.13.9-3+b1), libpython3-dev (= 3.13.9-3+b1), libpython3-stdlib (= 3.13.9-3+b1), libpython3.13 (= 3.13.12-1), libpython3.13-dev (= 3.13.12-1), libpython3.13-minimal (= 3.13.12-1), libpython3.13-stdlib (= 3.13.12-1), libpython3.14 (= 3.14.5-1), libpython3.14-dev (= 3.14.5-1), libpython3.14-minimal (= 3.14.5-1), libpython3.14-stdlib (= 3.14.5-1), libqhull-r8.0 (= 2020.2-9), libreadline8t64 (= 8.3-4), libselinux1 (= 3.10-1), libsframe3 (= 2.46-3), libsimde-dev (= 0.8.4~rc3-5), libsmartcols1 (= 2.42-6), libsqlite3-0 (= 3.46.1-9+b1), libssl3t64 (= 3.6.2-1), libstdc++-15-dev (= 15.2.0-17), libstdc++6 (= 16.1.0-1), libsystemd0 (= 261~rc1-1), libtinfo6 (= 6.6+20251231-1+b1), libtool (= 2.5.4-11), libtsan2 (= 16.1.0-1), libubsan1 (= 16.1.0-1), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 261~rc1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42-6), libxml2-16 (= 2.15.2+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 7.0.9-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1+b1), netbase (= 6.5), openssl (= 3.6.2-1), openssl-provider-legacy (= 3.6.2-1), patch (= 2.8-2), perl (= 5.40.1-7+b1), perl-base (= 5.40.1-7+b1), perl-modules-5.40 (= 5.40.1-7), po-debconf (= 1.0.22), procps (= 2:4.0.4-9+b2), pybuild-plugin-pyproject (= 7.20260524), python3 (= 3.13.9-3+b1), python3-all (= 3.13.9-3+b1), python3-all-dev (= 3.13.9-3+b1), python3-autocommand (= 2.2.2-4), python3-build (= 1.4.0-1), python3-cykhash (= 2.0.0-4), python3-decorator (= 5.2.1-2), python3-dev (= 3.13.9-3+b1), python3-hmmlearn (= 0.3.3-1), python3-inflect (= 7.5.0-1), python3-iniconfig (= 2.1.0-2), python3-installer (= 1.0.1+dfsg1-1), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-joblib (= 1.5.2-1), python3-minimal (= 3.13.9-3+b1), python3-more-itertools (= 10.8.0-1), python3-numpy (= 1:2.4.4+ds-2), python3-numpy-dev (= 1:2.4.4+ds-2), python3-packaging (= 26.0-1), python3-pip (= 26.1.1+dfsg-1), python3-pkg-resources (= 78.1.1-0.1), python3-pluggy (= 1.6.0-2), python3-pygments (= 2.19.2+dfsg-1), python3-pyproject-hooks (= 1.2.0-1), python3-pytest (= 9.0.3-1), python3-scipy (= 1.17.1-4), python3-setuptools (= 78.1.1-0.1), python3-sklearn (= 1.8.0+dfsg-4), python3-sklearn-lib (= 1.8.0+dfsg-4), python3-threadpoolctl (= 3.1.0-1), python3-typeguard (= 4.4.4-2), python3-typing-extensions (= 4.15.0-2), python3-wheel (= 0.47.0-1), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.12-1), python3.13-dev (= 3.13.12-1), python3.13-minimal (= 3.13.12-1), python3.14 (= 3.14.5-1), python3.14-dev (= 3.14.5-1), python3.14-minimal (= 3.14.5-1), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.4-1), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), tzdata (= 2026b-1), util-linux (= 2.42-6), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1778749244" +------------------------------------------------------------------------------+ | Package contents Mon, 01 Jun 2026 15:40:05 +0000 | +------------------------------------------------------------------------------+ macs-dbgsym_3.0.4-1_riscv64.deb ------------------------------- new Debian package, version 2.0. size 30470648 bytes: control archive=2872 bytes. 2371 bytes, 12 lines control 5382 bytes, 51 lines md5sums Package: macs-dbgsym Source: macs Version: 3.0.4-1 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 31485 Depends: macs (= 3.0.4-1) Section: debug Priority: optional Description: debug symbols for macs Build-Ids: 0565850fad012f6b4fc853d5d053c31174ec1666 06f739efbdb630992b24e44e12c6626bffe33bcf 0a5a3fb5757df12e55404ee45424bf716ff48f68 11fff2f2bdc1d9f3b78c86cb3e4032ad45954482 1417314ce82ebd430e02c2efd1679dc7a0faf881 1c274a657a8908225e8659352c8509cb88985eaa 24ab5129f3692534e3e58c093a4477d254f64675 27f885dd386c56317a3f781ce77ea53e20ae3a50 2b10b6f85faee63858ffebd89c7e66d3d03ae44d 2b92b375dd96257f9b168ce15a45afa3407c5b75 2c5f46c0f1253e18e3bcf53f9b65372cc49c1586 2f001eb177ec89f030b056b23538681dd5c2c14e 3492d4605664967dfe7410a49e4034f2c52c565d 3af71c0978954560337d3dbe00734ffeceed43ba 4173f6d098e51e65c8adfdd10da90edeaf33d95d 5794f203fea7b6109a545df6c1db61ae095ca6ec 5eb3a351b35dcfdaf001c5c92c0af3c3ce2373da 60fa7a58a50de75805d42bda5b2158081ece2dd8 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science Priority: optional Homepage: https://github.com/taoliu/MACS/ Description: Model-based Analysis of ChIP-Seq on short reads sequencers MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples. drwxr-xr-x root/root 0 2026-05-14 09:00 ./ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/bin/ -rwxr-xr-x root/root 99907 2026-05-14 09:00 ./usr/bin/macs3 drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/ drwxr-xr-x root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/Commands/ -rw-r--r-- root/root 0 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/Commands/__init__.py -rw-r--r-- root/root 1848 2026-05-14 09:00 ./usr/lib/python3/dist-packages/MACS3/Commands/bdgbroadcall_cmd.py -rw-r--r-- root/root 3384 2026-05-14 09:00 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root/root 1359 2026-05-14 09:00 ./usr/share/man/man1/macs3_refinepeak.1.gz +------------------------------------------------------------------------------+ | Post Build Mon, 01 Jun 2026 15:40:15 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 01 Jun 2026 15:40:15 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 01 Jun 2026 15:40:32 +0000 | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 3064492 Build-Time: 18417 Distribution: unstable Host Architecture: riscv64 Install-Time: 25 Job: /srv/rebuilderd/tmp/rebuilderdX8jgQ6/inputs/macs_3.0.4-1.dsc Machine Architecture: riscv64 Package: macs Package-Time: 18553 Source-Version: 3.0.4-1 Space: 3064492 Status: successful Version: 3.0.4-1 -------------------------------------------------------------------------------- Finished at 2026-06-01T15:39:55Z Build needed 05:09:13, 3064492k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdX8jgQ6/out checking macs-dbgsym_3.0.4-1_riscv64.deb: size differs for macs-dbgsym_3.0.4-1_riscv64.deb