=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdzjNKHo/inputs/libmaus2_2.0.813+ds-6_riscv64.buildinfo Source: libmaus2 Version: 2.0.813+ds-6 rebuilderd-worker node: riscv64-33 +------------------------------------------------------------------------------+ | Downloading sources Fri, 07 Aug 2026 08:29:01 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [193 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [199 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [1,840 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [141 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,396 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [292 kB] Get:17 https://deb.debian.org/debian forky/main Sources [11.1 MB] Get:18 https://deb.debian.org/debian forky/non-free-firmware Sources [7,856 B] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [10.6 kB] Get:20 https://deb.debian.org/debian sid/main Sources [11.8 MB] Get:21 https://deb.debian.org/debian experimental/main Sources [368 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Fetched 35.3 MB in 2min 45s (214 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/libm/libmaus2/libmaus2_2.0.813%2bds-6.dsc' libmaus2_2.0.813+ds-6.dsc 2315 SHA256:a3c8f5ac285ae6567149bd9f2e3651027be70e2c092a64e30e78a30557659b85 'https://deb.debian.org/debian/pool/main/libm/libmaus2/libmaus2_2.0.813%2bds.orig.tar.xz' libmaus2_2.0.813+ds.orig.tar.xz 1655972 SHA256:8ad66707ad0881638e67f51ba5b2182fd0ad194601025f319c87af77d933b7c9 'https://deb.debian.org/debian/pool/main/libm/libmaus2/libmaus2_2.0.813%2bds-6.debian.tar.xz' libmaus2_2.0.813+ds-6.debian.tar.xz 10260 SHA256:fe6a03965722fb86ebf12b39b888a17e22bd47400644273833f56d0e1a0fad70 8ad66707ad0881638e67f51ba5b2182fd0ad194601025f319c87af77d933b7c9 libmaus2_2.0.813+ds.orig.tar.xz fe6a03965722fb86ebf12b39b888a17e22bd47400644273833f56d0e1a0fad70 libmaus2_2.0.813+ds-6.debian.tar.xz a3c8f5ac285ae6567149bd9f2e3651027be70e2c092a64e30e78a30557659b85 libmaus2_2.0.813+ds-6.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 07 Aug 2026 08:31:56 +0000 | +------------------------------------------------------------------------------+ Rebuilding libmaus2=2.0.813+ds-6 in /srv/rebuilderd/tmp/rebuilderdzjNKHo/inputs now. + /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdzjNKHo/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdzjNKHo/inputs/libmaus2_2.0.813+ds-6_riscv64.buildinfo /srv/rebuilderd/tmp/rebuilderdzjNKHo/inputs/libmaus2_2.0.813+ds-6_riscv64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/libmaus2-2.0.813+ds I: verifying dsc... successful! WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/pool/main/t/texlive-extra/texlive-bibtex-extra_2026.20260711-1_all.190624.part WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/archive/debian/debian/dists/unstable/InRelease.2558305.part WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/archive/debian/debian/dists/unstable/InRelease.2599616.part WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/archive/debian/debian/dists/unstable/InRelease.2676172.part WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/archive/debian/debian/dists/unstable/InRelease.2599949.part WARNING:root:found partial file in cache, consider deleting it manually: /srv/rebuilderd/cache/archive/debian/debian/dists/unstable/InRelease.2882023.part Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://deb.debian.org/debian unstable/main riscv64 Packages [10.3 MB] Ign:2 http://deb.debian.org/debian unstable/main riscv64 Packages Get:2 http://deb.debian.org/debian unstable/main riscv64 Packages [10.3 MB] Fetched 10.5 MB in 1min 21s (129 kB/s) Reading package lists... Get:1 http://deb.debian.org/debian unstable/main riscv64 libgcc-16-dev riscv64 16.1.0-3 [5843 kB] Fetched 5843 kB in 0s (31.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjycrcmqo/libgcc-16-dev_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsecrecy-dev riscv64 0.0.5+ds-5 [21.3 kB] Fetched 21.3 kB in 1s (24.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpskglq0hp/libsecrecy-dev_0.0.5+ds-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcc1-0 riscv64 16.1.0-3 [41.7 kB] Fetched 41.7 kB in 0s (2099 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm9_am9hb/libcc1-0_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libbz2-1.0 riscv64 1.0.8-6+b2 [39.6 kB] Fetched 39.6 kB in 0s (1992 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf_o05o9v/libbz2-1.0_1.0.8-6+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libffi8 riscv64 3.7.1-2 [26.2 kB] Fetched 26.2 kB in 0s (1328 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpewao9taa/libffi8_3.7.1-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++-riscv64-linux-gnu riscv64 4:16.1.0-3 [1196 B] Fetched 1196 B in 0s (22.9 kB/s) dpkg-name: info: moved 'g++-riscv64-linux-gnu_4%3a16.1.0-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpcu6jql20/g++-riscv64-linux-gnu_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debian-archive-keyring all 2025.1 [179 kB] Fetched 179 kB in 0s (3216 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ugu1dje/debian-archive-keyring_2025.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-16 riscv64 16.1.0-3 [512 kB] Fetched 512 kB in 0s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc038d2ni/gcc-16_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgdbm6t64 riscv64 1.26-1+b2 [78.1 kB] Fetched 78.1 kB in 0s (3753 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptfkprp3c/libgdbm6t64_1.26-1+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp-16 riscv64 16.1.0-3 [1268 B] Fetched 1268 B in 0s (65.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3vj5zhml/cpp-16_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsframe3 riscv64 2.47-2 [86.0 kB] Fetched 86.0 kB in 0s (4093 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmsgmy5p5/libsframe3_2.47-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libudev1 riscv64 261.2-1 [141 kB] Fetched 141 kB in 0s (2539 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbyacjm65/libudev1_261.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 patch riscv64 2.8-2 [134 kB] Fetched 134 kB in 0s (5978 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfwgvhu51/patch_2.8-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-riscv64-linux-gnu riscv64 4:16.1.0-3 [1432 B] Fetched 1432 B in 0s (75.7 kB/s) dpkg-name: info: moved 'gcc-riscv64-linux-gnu_4%3a16.1.0-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmp0raure_s/gcc-riscv64-linux-gnu_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gpg riscv64 2.4.9-7 [628 kB] Fetched 628 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiu4q5_in/gpg_2.4.9-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libboost-atomic1.90.0 riscv64 1.90.0-6 [226 kB] Fetched 226 kB in 0s (3989 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplr2ao08g/libboost-atomic1.90.0_1.90.0-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++ riscv64 4:16.1.0-3 [1324 B] Fetched 1324 B in 0s (69.0 kB/s) dpkg-name: info: moved 'g++_4%3a16.1.0-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmphfuekyx6/g++_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (513 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjl0iy_lr/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++-16-riscv64-linux-gnu riscv64 16.1.0-3 [142 MB] Fetched 142 MB in 5s (27.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqt_w7myy/g++-16-riscv64-linux-gnu_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debhelper all 14.3 [934 kB] Fetched 934 kB in 0s (23.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpizl23lne/debhelper_14.3_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-11 [57.9 kB] Fetched 57.9 kB in 0s (2814 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptq0nx_28/libsasl2-2_2.1.28+dfsg1-11_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmagic1t64 riscv64 1:5.47-4 [117 kB] Fetched 117 kB in 0s (5391 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.47-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmp2ytfzbwr/libmagic1t64_5.47-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgpgme45 riscv64 2.1.2-1 [347 kB] Fetched 347 kB in 0s (5848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_2digs2c/libgpgme45_2.1.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 make riscv64 4.4.1-3 [463 kB] Fetched 463 kB in 0s (7424 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmy8mjspk/make_4.4.1-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libidn2-0 riscv64 2.3.8-5 [108 kB] Fetched 108 kB in 0s (5014 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpofq5cqcw/libidn2-0_2.3.8-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (736 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmp5l8gmida/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 man-db riscv64 2.13.1-1 [1458 kB] Fetched 1458 kB in 0s (28.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3q770bwu/man-db_2.13.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgprofng0 riscv64 2.47-2 [722 kB] Fetched 722 kB in 0s (20.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpec2g9vpl/libgprofng0_2.47-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libuuid1 riscv64 2.42.2-2 [35.0 kB] Fetched 35.0 kB in 0s (1768 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07i42ut2/libuuid1_2.42.2-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgpgme-dev riscv64 2.1.2-1 [801 kB] Fetched 801 kB in 0s (21.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp78n0sthg/libgpgme-dev_2.1.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bzip2 riscv64 1.0.8-6+b2 [40.2 kB] Fetched 40.2 kB in 0s (1998 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ucochwm/bzip2_1.0.8-6+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgcc-15-dev riscv64 15.3.0-2 [5657 kB] Fetched 5657 kB in 0s (21.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppjp2ep6s/libgcc-15-dev_15.3.0-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sysvinit-utils riscv64 3.18-1 [29.3 kB] Fetched 29.3 kB in 0s (314 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb5m7fooc/sysvinit-utils_3.18-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dwz riscv64 0.17-1 [115 kB] Fetched 115 kB in 0s (5349 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp211q31oo/dwz_0.17-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgmpxx4ldbl riscv64 2:6.3.0+dfsg-5+b2 [328 kB] Fetched 328 kB in 2s (175 kB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmpldgcs837/libgmpxx4ldbl_6.3.0+dfsg-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp-riscv64-linux-gnu riscv64 4:16.1.0-3 [4464 B] Fetched 4464 B in 0s (232 kB/s) dpkg-name: info: moved 'cpp-riscv64-linux-gnu_4%3a16.1.0-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpdm2emd7c/cpp-riscv64-linux-gnu_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 file riscv64 1:5.47-4 [42.8 kB] Fetched 42.8 kB in 0s (2137 kB/s) dpkg-name: info: moved 'file_1%3a5.47-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpbbmlj5xp/file_5.47-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dh-autoreconf all 22 [12.2 kB] Fetched 12.2 kB in 0s (614 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfgpd2xjc/dh-autoreconf_22_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgcrypt20 riscv64 1.12.2-1 [902 kB] Fetched 902 kB in 0s (23.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxxx75euv/libgcrypt20_1.12.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 autopoint all 1.0-3 [820 kB] Fetched 820 kB in 0s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyoop48k6/autopoint_1.0-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtasn1-6 riscv64 4.21.0-2+b1 [49.7 kB] Fetched 49.7 kB in 0s (2485 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ub05lw0/libtasn1-6_4.21.0-2+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gpgconf riscv64 2.4.9-7 [125 kB] Fetched 125 kB in 0s (2290 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe81wkwi7/gpgconf_2.4.9-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 build-essential riscv64 12.12 [4628 B] Fetched 4628 B in 0s (235 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpakh8ri_y/build-essential_12.12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 hostname riscv64 3.25 [10.7 kB] Fetched 10.7 kB in 0s (547 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp51to4563/hostname_3.25_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.2-3 [991 kB] Fetched 991 kB in 0s (24.4 MB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmphrzuc2al/zlib1g-dev_1.3.dfsg+really1.3.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 readline-common all 8.3-4 [74.8 kB] Fetched 74.8 kB in 0s (1390 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ht26qcu/readline-common_8.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libattr1 riscv64 1:2.6.0-1 [24.7 kB] Fetched 24.7 kB in 0s (1274 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.6.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp8hxyabo5/libattr1_2.6.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libatomic1 riscv64 16.1.0-3 [8516 B] Fetched 8516 B in 0s (448 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo2xn7ekp/libatomic1_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc riscv64 4:16.1.0-3 [5144 B] Fetched 5144 B in 0s (271 kB/s) dpkg-name: info: moved 'gcc_4%3a16.1.0-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmph2a84c42/gcc_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc-bin riscv64 2.42-17 [586 kB] Fetched 586 kB in 0s (18.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8byrb97k/libc-bin_2.42-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc-dev-bin riscv64 2.42-17 [37.0 kB] Fetched 37.0 kB in 0s (1826 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ofcm3mo/libc-dev-bin_2.42-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 ncurses-base all 6.6+20260608-2 [276 kB] Fetched 276 kB in 0s (4735 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1sfktze_/ncurses-base_6.6+20260608-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 binutils riscv64 2.47-2 [285 kB] Fetched 285 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdmga14d7/binutils_2.47-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gettext riscv64 1.0-3 [2657 kB] Fetched 2657 kB in 0s (35.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7f7zkr5p/gettext_1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debconf all 1.5.92 [123 kB] Fetched 123 kB in 0s (5639 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjoetz7pt/debconf_1.5.92_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gzip riscv64 1.13-1 [139 kB] Fetched 139 kB in 0s (6252 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyp4g_3vk/gzip_1.13-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gnupg-l10n all 2.4.9-7 [748 kB] Fetched 748 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxh09yipb/gnupg-l10n_2.4.9-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 pinentry-curses riscv64 1.3.3-2 [90.0 kB] Fetched 90.0 kB in 0s (1647 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp578l5f1r/pinentry-curses_1.3.3-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-11 [17.5 kB] Fetched 17.5 kB in 0s (900 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpubhvdzp4/libsasl2-modules-db_2.1.28+dfsg1-11_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libboost1.90-dev riscv64 1.90.0-6 [11.3 MB] Fetched 11.3 MB in 0s (28.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeccx5b_3/libboost1.90-dev_1.90.0-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 mawk riscv64 1.3.4.20260302-1 [142 kB] Fetched 142 kB in 0s (6277 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64jqq_q2/mawk_1.3.4.20260302-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpkgconf7 riscv64 2.5.1-4 [47.1 kB] Fetched 47.1 kB in 0s (2363 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5fiulhlq/libpkgconf7_2.5.1-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dpkg-dev all 1.23.7 [1318 kB] Fetched 1318 kB in 0s (27.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf3fn6l_2/dpkg-dev_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 binutils-riscv64-linux-gnu riscv64 2.47-2 [907 kB] Fetched 907 kB in 0s (23.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp251g_if2/binutils-riscv64-linux-gnu_2.47-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmd0 riscv64 1.2.0-2 [44.0 kB] Fetched 44.0 kB in 0s (2200 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeumvcgl6/libmd0_1.2.0-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcap-ng0 riscv64 0.9.3-1+b1 [17.8 kB] Fetched 17.8 kB in 0s (922 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo90kxedl/libcap-ng0_0.9.3-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsystemd0 riscv64 261.2-1 [478 kB] Fetched 478 kB in 0s (7668 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ggmxubc/libsystemd0_261.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdpkg-perl all 1.23.7 [669 kB] Fetched 669 kB in 0s (19.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ql3jb5p/libdpkg-perl_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (9027 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvnv56bmf/po-debconf_1.0.22_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libboost-atomic1.90-dev riscv64 1.90.0-6 [240 kB] Fetched 240 kB in 0s (4197 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9lql93la/libboost-atomic1.90-dev_1.90.0-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc-gconv-modules-extra riscv64 2.42-17 [1102 kB] Fetched 1102 kB in 0s (25.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6hrktfz7/libc-gconv-modules-extra_2.42-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dirmngr riscv64 2.4.9-7 [381 kB] Fetched 381 kB in 0s (6398 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpedod0lmo/dirmngr_2.4.9-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblz4-1 riscv64 1.10.0-10 [86.3 kB] Fetched 86.3 kB in 0s (1602 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqr08qvf3/liblz4-1_1.10.0-10_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gnupg all 2.4.9-7 [415 kB] Fetched 415 kB in 0s (6860 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpua22gfs2/gnupg_2.4.9-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpcre2-8-0 riscv64 10.46-1+b2 [296 kB] Fetched 296 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv_a2drkj/libpcre2-8-0_10.46-1+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libbinutils riscv64 2.47-2 [509 kB] Fetched 509 kB in 0s (17.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa7kbuf6v/libbinutils_2.47-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (4918 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_1yvpmrb/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libhogweed6t64 riscv64 3.10.2-1+b1 [334 kB] Fetched 334 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0nf41wkd/libhogweed6t64_3.10.2-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++-16 riscv64 16.1.0-3 [33.0 kB] Fetched 33.0 kB in 0s (621 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv0svo8rj/g++-16_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 grep riscv64 3.12-1 [442 kB] Fetched 442 kB in 0s (15.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwu7kfmba/grep_3.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtool all 2.5.4-11 [539 kB] Fetched 539 kB in 0s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi09d2q1l/libtool_2.5.4-11_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libassuan9 riscv64 3.0.2-2+b2 [60.3 kB] Fetched 60.3 kB in 0s (1134 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwdnv4l0y/libassuan9_3.0.2-2+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsmartcols1 riscv64 2.42.2-2 [155 kB] Fetched 155 kB in 0s (6944 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptrw8hbnx/libsmartcols1_2.42.2-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libaudit1 riscv64 1:4.1.2-1+b1 [58.7 kB] Fetched 58.7 kB in 0s (2893 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp6hrygbq4/libaudit1_4.1.2-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblsan0 riscv64 16.1.0-3 [1342 kB] Fetched 1342 kB in 0s (16.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnndh03ab/liblsan0_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libstdc++6 riscv64 16.1.0-3 [775 kB] Fetched 775 kB in 0s (21.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbc1mbal1/libstdc++6_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libstdc++-15-dev riscv64 15.3.0-2 [6740 kB] Fetched 6740 kB in 0s (17.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplmom1i7n/libstdc++-15-dev_15.3.0-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgdbm-compat4t64 riscv64 1.26-1+b2 [52.1 kB] Fetched 52.1 kB in 0s (2563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnv9ag07c/libgdbm-compat4t64_1.26-1+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-16-riscv64-linux-gnu riscv64 16.1.0-3 [145 MB] Fetched 145 MB in 5s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg88p14ip/gcc-16-riscv64-linux-gnu_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 perl-modules-5.42 all 5.42.2-3 [3210 kB] Fetched 3210 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3o1zhvpi/perl-modules-5.42_5.42.2-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-16-base riscv64 16.1.0-3 [37.5 kB] Fetched 37.5 kB in 0s (1901 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpds9ks9_s/gcc-16-base_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libasan8 riscv64 16.1.0-3 [2993 kB] Fetched 2993 kB in 0s (36.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqj39l584/libasan8_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libssl3t64 riscv64 3.6.3-1 [2255 kB] Fetched 2255 kB in 0s (33.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp41uyk55h/libssl3t64_3.6.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libnpth0t64 riscv64 1.8-3+b2 [22.6 kB] Fetched 22.6 kB in 0s (435 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjog1sdvq/libnpth0t64_1.8-3+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libacl1 riscv64 2.4.0-1 [37.1 kB] Fetched 37.1 kB in 0s (1896 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoosx3zpc/libacl1_2.4.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 openssl-provider-legacy riscv64 3.6.3-1 [322 kB] Fetched 322 kB in 0s (12.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprfepr72v/openssl-provider-legacy_3.6.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcrypt1 riscv64 1:4.5.1-1+b1 [113 kB] Fetched 113 kB in 0s (5236 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp7h0bcrhf/libcrypt1_4.5.1-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libblkid1 riscv64 2.42.2-2 [193 kB] Fetched 193 kB in 0s (8270 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi6q3gk16/libblkid1_2.42.2-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsqlite3-0 riscv64 3.53.4-2 [957 kB] Fetched 957 kB in 0s (24.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmwdh6moo/libsqlite3-0_3.53.4-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dpkg riscv64 1.23.7 [1534 kB] Fetched 1534 kB in 0s (29.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpea6zsy2n/dpkg_1.23.7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bash riscv64 5.3-3 [1560 kB] Fetched 1560 kB in 0s (29.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt51swxh6/bash_5.3-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Fetched 6020 B in 0s (317 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp20h3jn9t/dh-strip-nondeterminism_1.15.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dash riscv64 0.5.12-12 [101 kB] Fetched 101 kB in 0s (4822 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl_ujiglu/dash_0.5.12-12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libitm1 riscv64 16.1.0-3 [25.6 kB] Fetched 25.6 kB in 0s (1330 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpci63qr_j/libitm1_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtinfo6 riscv64 6.6+20260608-2 [351 kB] Fetched 351 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9y20kyev/libtinfo6_6.6+20260608-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 m4 riscv64 1.4.21-1 [330 kB] Fetched 330 kB in 0s (5559 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa42o8eqh/m4_1.4.21-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libselinux1 riscv64 3.11-2 [90.4 kB] Fetched 90.4 kB in 0s (4354 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnsk5w9j7/libselinux1_3.11-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgpg-error0 riscv64 1.61-3 [89.9 kB] Fetched 89.9 kB in 0s (4324 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_gubykas/libgpg-error0_1.61-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtsan2 riscv64 16.1.0-3 [2704 kB] Fetched 2704 kB in 0s (35.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkmvb_jsw/libtsan2_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debianutils riscv64 5.23.2 [91.7 kB] Fetched 91.7 kB in 0s (4389 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzxlde7jo/debianutils_5.23.2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libunistring5 riscv64 1.4.2-1 [475 kB] Fetched 475 kB in 0s (16.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt_gsnhjy/libunistring5_1.4.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Fetched 60.0 kB in 0s (1123 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoz_4m9b5/autotools-dev_20240727.1+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libctf-nobfd0 riscv64 2.47-2 [163 kB] Fetched 163 kB in 0s (7190 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1vfdsry0/libctf-nobfd0_2.47-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpipeline1 riscv64 1.5.8-3 [48.2 kB] Fetched 48.2 kB in 0s (2414 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoq2y7sf4/libpipeline1_1.5.8-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libksba8 riscv64 1.8.0-3 [139 kB] Fetched 139 kB in 0s (2522 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_voshraz/libksba8_1.8.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.2-3 [87.3 kB] Fetched 87.3 kB in 0s (4175 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpflf_o7j7/zlib1g_1.3.dfsg+really1.3.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libreadline8t64 riscv64 8.3-4 [180 kB] Fetched 180 kB in 0s (7838 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuo49iipn/libreadline8t64_8.3-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 perl-base riscv64 5.42.2-3 [1852 kB] Fetched 1852 kB in 0s (31.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8bkec22x/perl-base_5.42.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libctf0 riscv64 2.47-2 [95.7 kB] Fetched 95.7 kB in 0s (4563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqqkvu3om/libctf0_2.47-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgmp-dev riscv64 2:6.3.0+dfsg-5+b2 [1101 kB] Fetched 1101 kB in 0s (13.4 MB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmp23kbef0f/libgmp-dev_6.3.0+dfsg-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libisl23 riscv64 0.28-1 [666 kB] Fetched 666 kB in 0s (19.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwpx1fgf8/libisl23_0.28-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libelf1t64 riscv64 0.195-1 [62.5 kB] Fetched 62.5 kB in 0s (3061 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp59trrjtk/libelf1t64_0.195-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 util-linux riscv64 2.42.2-2 [1225 kB] Fetched 1225 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2plggiv8/util-linux_2.42.2-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam-modules riscv64 1.7.0-8 [165 kB] Fetched 165 kB in 0s (2958 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpypomdeid/libpam-modules_1.7.0-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam-modules-bin riscv64 1.7.0-8 [46.2 kB] Fetched 46.2 kB in 0s (2331 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfkyvfg5o/libpam-modules-bin_1.7.0-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgomp1 riscv64 16.1.0-3 [137 kB] Fetched 137 kB in 0s (6232 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi_o3lci8/libgomp1_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 nettle-dev riscv64 3.10.2-1+b1 [1556 kB] Fetched 1556 kB in 0s (29.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4x61eat6/nettle-dev_3.10.2-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 ncurses-bin riscv64 6.6+20260608-2 [442 kB] Fetched 442 kB in 0s (15.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5abehcj/ncurses-bin_6.6+20260608-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgnutls30t64 riscv64 3.8.13-1 [1517 kB] Fetched 1517 kB in 0s (29.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiaweupza/libgnutls30t64_3.8.13-1_riscv64.deb' Downloading dependency 1 of 189: libgcc-16-dev:riscv64=16.1.0-3 Downloading dependency 2 of 189: libsecrecy-dev:riscv64=0.0.5+ds-5 Downloading dependency 3 of 189: libcc1-0:riscv64=16.1.0-3 Downloading dependency 4 of 189: libbz2-1.0:riscv64=1.0.8-6+b2 Downloading dependency 5 of 189: libffi8:riscv64=3.7.1-2 Downloading dependency 6 of 189: g++-riscv64-linux-gnu:riscv64=4:16.1.0-3 Downloading dependency 7 of 189: debian-archive-keyring:riscv64=2025.1 Downloading dependency 8 of 189: gcc-16:riscv64=16.1.0-3 Downloading dependency 9 of 189: libgdbm6t64:riscv64=1.26-1+b2 Downloading dependency 10 of 189: cpp-16:riscv64=16.1.0-3 Downloading dependency 11 of 189: libsframe3:riscv64=2.47-2 Downloading dependency 12 of 189: libudev1:riscv64=261.2-1 Downloading dependency 13 of 189: patch:riscv64=2.8-2 Downloading dependency 14 of 189: gcc-riscv64-linux-gnu:riscv64=4:16.1.0-3 Downloading dependency 15 of 189: gpg:riscv64=2.4.9-7 Downloading dependency 16 of 189: libboost-atomic1.90.0:riscv64=1.90.0-6 Downloading dependency 17 of 189: g++:riscv64=4:16.1.0-3 Downloading dependency 18 of 189: sensible-utils:riscv64=0.0.26 Downloading dependency 19 of 189: g++-16-riscv64-linux-gnu:riscv64=16.1.0-3 Downloading dependency 20 of 189: debhelper:riscv64=14.3 Downloading dependency 21 of 189: libsasl2-2:riscv64=2.1.28+dfsg1-11 Downloading dependency 22 of 189: libmagic1t64:riscv64=1:5.47-4 Downloading dependency 23 of 189: libgpgme45:riscv64=2.1.2-1 Downloading dependency 24 of 189: make:riscv64=4.4.1-3 Downloading dependency 25 of 189: libidn2-0:riscv64=2.3.8-5 Downloading dependency 26 of 189: libaudit-common:riscv64=1:4.1.2-1 Downloading dependency 27 of 189: man-db:riscv64=2.13.1-1 Downloading dependency 28 of 189: libgprofng0:riscv64=2.47-2 Downloading dependency 29 of 189: libuuid1:riscv64=2.42.2-2 Downloading dependency 30 of 189: libgpgme-dev:riscv64=2.1.2-1 Downloading dependency 31 of 189: bzip2:riscv64=1.0.8-6+b2 Downloading dependency 32 of 189: libgcc-15-dev:riscv64=15.3.0-2 Downloading dependency 33 of 189: sysvinit-utils:riscv64=3.18-1 Downloading dependency 34 of 189: dwz:riscv64=0.17-1 Downloading dependency 35 of 189: libgmpxx4ldbl:riscv64=2:6.3.0+dfsg-5+b2 Downloading dependency 36 of 189: cpp-riscv64-linux-gnu:riscv64=4:16.1.0-3 Downloading dependency 37 of 189: file:riscv64=1:5.47-4 Downloading dependency 38 of 189: dh-autoreconf:riscv64=22 Downloading dependency 39 of 189: libgcrypt20:riscv64=1.12.2-1 Downloading dependency 40 of 189: autopoint:riscv64=1.0-3 Downloading dependency 41 of 189: libtasn1-6:riscv64=4.21.0-2+b1 Downloading dependency 42 of 189: gpgconf:riscv64=2.4.9-7 Downloading dependency 43 of 189: build-essential:riscv64=12.12 Downloading dependency 44 of 189: hostname:riscv64=3.25 Downloading dependency 45 of 189: zlib1g-dev:riscv64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 46 of 189: readline-common:riscv64=8.3-4 Downloading dependency 47 of 189: libattr1:riscv64=1:2.6.0-1 Downloading dependency 48 of 189: libatomic1:riscv64=16.1.0-3 Downloading dependency 49 of 189: gcc:riscv64=4:16.1.0-3 Downloading dependency 50 of 189: libc-bin:riscv64=2.42-17 Downloading dependency 51 of 189: libc-dev-bin:riscv64=2.42-17 Downloading dependency 52 of 189: ncurses-base:riscv64=6.6+20260608-2 Downloading dependency 53 of 189: binutils:riscv64=2.47-2 Downloading dependency 54 of 189: gettext:riscv64=1.0-3 Downloading dependency 55 of 189: debconf:riscv64=1.5.92 Downloading dependency 56 of 189: gzip:riscv64=1.13-1 Downloading dependency 57 of 189: gnupg-l10n:riscv64=2.4.9-7 Downloading dependency 58 of 189: pinentry-curses:riscv64=1.3.3-2 Downloading dependency 59 of 189: libsasl2-modules-db:riscv64=2.1.28+dfsg1-11 Downloading dependency 60 of 189: libboost1.90-dev:riscv64=1.90.0-6 Downloading dependency 61 of 189: mawk:riscv64=1.3.4.20260302-1 Downloading dependency 62 of 189: libpkgconf7:riscv64=2.5.1-4 Downloading dependency 63 of 189: dpkg-dev:riscv64=1.23.7 Downloading dependency 64 of 189: binutils-riscv64-linux-gnu:riscv64=2.47-2 Downloading dependency 65 of 189: libmd0:riscv64=1.2.0-2 Downloading dependency 66 of 189: libcap-ng0:riscv64=0.9.3-1+b1 Downloading dependency 67 of 189: libsystemd0:riscv64=261.2-1 Downloading dependency 68 of 189: libdpkg-perl:riscv64=1.23.7 Downloading dependency 69 of 189: po-debconf:riscv64=1.0.22 Downloading dependency 70 of 189: libboost-atomic1.90-dev:riscv64=1.90.0-6 Downloading dependency 71 of 189: libc-gconv-modules-extra:riscv64=2.42-17 Downloading dependency 72 of 189: dirmngr:riscv64=2.4.9-7 Downloading dependency 73 of 189: liblz4-1:riscv64=1.10.0-10 Downloading dependency 74 of 189: gnupg:riscv64=2.4.9-7 Downloading dependency 75 of 189: libpcre2-8-0:riscv64=10.46-1+b2 Downloading dependency 76 of 189: libbinutils:riscv64=2.47-2 Downloading dependency 77 of 189: libarchive-zip-perl:riscv64=1.68-1 Downloading dependency 78 of 189: libhogweed6t64:riscv64=3.10.2-1+b1 Downloading dependency 79 of 189: g++-16:riscv64=16.1.0-3 Downloading dependency 80 of 189: grep:riscv64=3.12-1 Downloading dependency 81 of 189: libtool:riscv64=2.5.4-11 Downloading dependency 82 of 189: libassuan9:riscv64=3.0.2-2+b2 Downloading dependency 83 of 189: libsmartcols1:riscv64=2.42.2-2 Downloading dependency 84 of 189: libaudit1:riscv64=1:4.1.2-1+b1 Downloading dependency 85 of 189: liblsan0:riscv64=16.1.0-3 Downloading dependency 86 of 189: libstdc++6:riscv64=16.1.0-3 Downloading dependency 87 of 189: libstdc++-15-dev:riscv64=15.3.0-2 Downloading dependency 88 of 189: libgdbm-compat4t64:riscv64=1.26-1+b2 Downloading dependency 89 of 189: gcc-16-riscv64-linux-gnu:riscv64=16.1.0-3 Downloading dependency 90 of 189: perl-modules-5.42:riscv64=5.42.2-3 Downloading dependency 91 of 189: gcc-16-base:riscv64=16.1.0-3 Downloading dependency 92 of 189: libasan8:riscv64=16.1.0-3 Downloading dependency 93 of 189: libssl3t64:riscv64=3.6.3-1 Downloading dependency 94 of 189: libnpth0t64:riscv64=1.8-3+b2 Downloading dependency 95 of 189: libacl1:riscv64=2.4.0-1 Downloading dependency 96 of 189: openssl-provider-legacy:riscv64=3.6.3-1 Downloading dependency 97 of 189: libcrypt1:riscv64=1:4.5.1-1+b1 Downloading dependency 98 of 189: libblkid1:riscv64=2.42.2-2 Downloading dependency 99 of 189: libsqlite3-0:riscv64=3.53.4-2 Downloading dependency 100 of 189: dpkg:riscv64=1.23.7 Downloading dependency 101 of 189: bash:riscv64=5.3-3 Downloading dependency 102 of 189: dh-strip-nondeterminism:riscv64=1.15.1-1 Downloading dependency 103 of 189: dash:riscv64=0.5.12-12 Downloading dependency 104 of 189: libitm1:riscv64=16.1.0-3 Downloading dependency 105 of 189: libtinfo6:riscv64=6.6+20260608-2 Downloading dependency 106 of 189: m4:riscv64=1.4.21-1 Downloading dependency 107 of 189: libselinux1:riscv64=3.11-2 Downloading dependency 108 of 189: libgpg-error0:riscv64=1.61-3 Downloading dependency 109 of 189: libtsan2:riscv64=16.1.0-3 Downloading dependency 110 of 189: debianutils:riscv64=5.23.2 Downloading dependency 111 of 189: libunistring5:riscv64=1.4.2-1 Downloading dependency 112 of 189: autotools-dev:riscv64=20240727.1+nmu1 Downloading dependency 113 of 189: libctf-nobfd0:riscv64=2.47-2 Downloading dependency 114 of 189: libpipeline1:riscv64=1.5.8-3 Downloading dependency 115 of 189: libksba8:riscv64=1.8.0-3 Downloading dependency 116 of 189: zlib1g:riscv64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 117 of 189: libreadline8t64:riscv64=8.3-4 Downloading dependency 118 of 189: perl-base:riscv64=5.42.2-3 Downloading dependency 119 of 189: libctf0:riscv64=2.47-2 Downloading dependency 120 of 189: libgmp-dev:riscv64=2:6.3.0+dfsg-5+b2 Downloading dependency 121 of 189: libisl23:riscv64=0.28-1 Downloading dependency 122 of 189: libelf1t64:riscv64=0.195-1 Downloading dependency 123 of 189: util-linux:riscv64=2.42.2-2 Downloading dependency 124 of 189: libpam-modules:riscv64=1.7.0-8 Downloading dependency 125 of 189: libpam-modules-bin:riscv64=1.7.0-8 Downloading dependency 126 of 189: libgomp1:riscv64=16.1.0-3 Downloading dependency 127 of 189: nettle-dev:riscv64=3.10.2-1+b1 Downloading dependency 128 of 189: ncurses-bin:riscv64=6.6+20260608-2 Downloading dependency 129 of 189: libgnutls30t64:riscv64=3.8.13-1 Downloading dependency 130 of 189: libjansson4:riscv64=2.15.1-1Get:1 http://deb.debian.org/debian unstable/main riscv64 libjansson4 riscv64 2.15.1-1 [65.1 kB] Fetched 65.1 kB in 0s (1217 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk0qv2svz/libjansson4_2.15.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 perl riscv64 5.42.2-3 [266 kB] Fetched 266 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppas3afwk/perl_5.42.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmpfr6 riscv64 4.2.2-3 [666 kB] Fetched 666 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplc5bdrnf/libmpfr6_4.2.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam0g riscv64 1.7.0-8 [66.9 kB] Fetched 66.9 kB in 0s (3240 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnl_44lzt/libpam0g_1.7.0-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sed riscv64 4.9-3 [329 kB] Fetched 329 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5wo1sal3/sed_4.9-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libxxhash0 riscv64 0.8.3-2+b2 [39.6 kB] Fetched 39.6 kB in 0s (2019 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuvr7un86/libxxhash0_0.8.3-2+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 apt riscv64 3.3.2 [1451 kB] Fetched 1451 kB in 6s (239 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8nw9x9na/apt_3.3.2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libuchardet0 riscv64 0.0.8-2+b2 [68.8 kB] Fetched 68.8 kB in 0s (3337 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7iav9ccg/libuchardet0_0.0.8-2+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 coreutils riscv64 9.10-1 [3128 kB] Fetched 3128 kB in 0s (25.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwgguo4o3/coreutils_9.10-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libnettle8t64 riscv64 3.10.2-1+b1 [331 kB] Fetched 331 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbuh8a3xy/libnettle8t64_3.10.2-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libncursesw6 riscv64 6.6+20260608-2 [141 kB] Fetched 141 kB in 0s (6327 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw6wmbkay/libncursesw6_6.6+20260608-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Fetched 17.1 kB in 0s (895 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpud1mm47m/libfile-stripnondeterminism-perl_1.15.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 groff-base riscv64 1.24.1-1 [1311 kB] Fetched 1311 kB in 0s (28.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpydsb3hjy/groff-base_1.24.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 pkgconf riscv64 2.5.1-4 [33.6 kB] Fetched 33.6 kB in 0s (1708 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp72n9lhfn/pkgconf_2.5.1-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam-runtime all 1.7.0-8 [246 kB] Fetched 246 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvb_d_mb4/libpam-runtime_1.7.0-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmagic-mgc riscv64 1:5.47-4 [345 kB] Fetched 345 kB in 0s (13.1 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.47-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmplb9qebwg/libmagic-mgc_5.47-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 findutils riscv64 4.11.0-2 [785 kB] Fetched 785 kB in 0s (22.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_czjtksx/findutils_4.11.0-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-11+b1 [719 kB] Fetched 719 kB in 0s (20.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg_um2pmx/libdb5.3t64_5.3.28+dfsg2-11+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmpc3 riscv64 1.3.1-3 [56.5 kB] Fetched 56.5 kB in 0s (2803 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpol3gpht8/libmpc3_1.3.1-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libapt-pkg7.0 riscv64 3.3.2 [1168 kB] Fetched 1168 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqcgxescx/libapt-pkg7.0_3.3.2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 rpcsvc-proto riscv64 1.4.4-1 [61.5 kB] Fetched 61.5 kB in 0s (3059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5qr85xfh/rpcsvc-proto_1.4.4-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmount1 riscv64 2.42.2-2 [229 kB] Fetched 229 kB in 0s (9551 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkbm1jv37/libmount1_2.42.2-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 tar riscv64 1.35+dfsg-4 [821 kB] Fetched 821 kB in 0s (22.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdlbs8hdn/tar_1.35+dfsg-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 pkgconf-bin riscv64 2.5.1-4 [35.1 kB] Fetched 35.1 kB in 0s (1786 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0y6ziu3u/pkgconf-bin_2.5.1-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc6 riscv64 2.42-17 [1397 kB] Fetched 1397 kB in 0s (28.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2f36kugb/libc6_2.42-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libstdc++-16-dev riscv64 16.1.0-3 [10.6 MB] Fetched 10.6 MB in 0s (44.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2jupiew9/libstdc++-16-dev_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bsdextrautils riscv64 2.42.2-2 [103 kB] Fetched 103 kB in 0s (4839 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0_30o89l/bsdextrautils_2.42.2-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-15-base riscv64 15.3.0-2 [37.7 kB] Fetched 37.7 kB in 0s (721 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpep_16if7/gcc-15-base_15.3.0-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gettext-base riscv64 1.0-3 [331 kB] Fetched 331 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnpi0g1wm/gettext-base_1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (1189 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgnud80e4/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblzma5 riscv64 5.8.3-1 [334 kB] Fetched 334 kB in 0s (5542 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpih41egah/liblzma5_5.8.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libperl5.42 riscv64 5.42.2-3 [3862 kB] Fetched 3862 kB in 0s (37.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3gyb9hf2/libperl5.42_5.42.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 base-passwd riscv64 3.6.8 [54.8 kB] Fetched 54.8 kB in 0s (2711 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzprbeddx/base-passwd_3.6.8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libassuan-dev riscv64 3.0.2-2+b2 [175 kB] Fetched 175 kB in 0s (3147 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdi7anfgc/libassuan-dev_3.0.2-2+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 d-shlibs all 0.109 [11.1 kB] Fetched 11.1 kB in 0s (211 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpolbfqy78/d-shlibs_0.109_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gpgsm riscv64 2.4.9-7 [268 kB] Fetched 268 kB in 0s (4650 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0umjur45/gpgsm_2.4.9-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgcc-s1 riscv64 16.1.0-3 [74.3 kB] Fetched 74.3 kB in 0s (3591 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe5667i5u/libgcc-s1_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sqv riscv64 1.4.0-1 [693 kB] Fetched 693 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr_0yr3nm/sqv_1.4.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp-16-riscv64-linux-gnu riscv64 16.1.0-3 [131 MB] Fetched 131 MB in 6s (22.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptk1si17_/cpp-16-riscv64-linux-gnu_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 base-files riscv64 14.2 [87.9 kB] Fetched 87.9 kB in 0s (4242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxoqwujiv/base-files_14.2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdebconfclient0 riscv64 0.283 [7424 B] Fetched 7424 B in 0s (392 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprdbqzbzv/libdebconfclient0_0.283_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libboost-atomic-dev riscv64 1.90.0.2 [3172 B] Fetched 3172 B in 0s (60.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprzjvttp2/libboost-atomic-dev_1.90.0.2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc6-dev riscv64 2.42-17 [3417 kB] Fetched 3417 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqd0jzdk/libc6-dev_2.42-17_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 linux-libc-dev all 7.1.6-1 [2038 kB] Fetched 2038 kB in 0s (20.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0_d77i_3/linux-libc-dev_7.1.6-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdebhelper-perl all 14.3 [77.3 kB] Fetched 77.3 kB in 0s (3751 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpirp7vc1l/libdebhelper-perl_14.3_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libldap2 riscv64 2.6.13+dfsg-1+b1 [190 kB] Fetched 190 kB in 0s (8214 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplsm6rgkl/libldap2_2.6.13+dfsg-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp riscv64 4:16.1.0-3 [1568 B] Fetched 1568 B in 0s (82.3 kB/s) dpkg-name: info: moved 'cpp_4%3a16.1.0-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpg2bur05x/cpp_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 automake all 1:1.18.1-4 [877 kB] Fetched 877 kB in 0s (12.3 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmpg7htlf33/automake_1.18.1-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgpg-error-dev riscv64 1.61-3 [273 kB] Fetched 273 kB in 0s (4733 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64r4hvdv/libgpg-error-dev_1.61-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libp11-kit0 riscv64 0.26.4-1 [469 kB] Fetched 469 kB in 0s (16.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmecxbvpv/libp11-kit0_0.26.4-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libubsan1 riscv64 16.1.0-3 [1191 kB] Fetched 1191 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr1hsiiez/libubsan1_16.1.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 diffutils riscv64 1:3.12-1 [405 kB] Fetched 405 kB in 0s (14.7 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpcidwhnlr/diffutils_3.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-5+b2 [561 kB] Fetched 561 kB in 0s (17.9 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_riscv64.deb' to '/srv/rebuilderd/tmp/tmp9gl7zp4j/libgmp10_6.3.0+dfsg-5+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 xz-utils riscv64 5.8.3-1 [739 kB] Fetched 739 kB in 0s (10.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5wrfg3uf/xz-utils_5.8.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libxml2-16 riscv64 2.15.3+dfsg-1 [640 kB] Fetched 640 kB in 0s (19.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp05nbdu9m/libxml2-16_2.15.3+dfsg-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 binutils-common riscv64 2.47-2 [2685 kB] Fetched 2685 kB in 0s (35.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptkufsv5r/binutils-common_2.47-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (1982 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8iut1vr1/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gpg-agent riscv64 2.4.9-7 [266 kB] Fetched 266 kB in 0s (4632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8gyo3h1h/gpg-agent_2.4.9-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libzstd1 riscv64 1.5.7+dfsg-4 [368 kB] Fetched 368 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx0054k5k/libzstd1_1.5.7+dfsg-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 autoconf all 2.73-2 [516 kB] Fetched 516 kB in 0s (8188 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwt9qoubw/autoconf_2.73-2_all.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture riscv64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_riscv64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_riscv64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpwikmehrq/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture riscv64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.TNTaZyzWjH as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.TNTaZyzWjH 127.0.0.1 - - [07/Aug/2026 16:39:29] code 404, message File not found 127.0.0.1 - - [07/Aug/2026 16:39:29] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:36443 ./ InRelease 127.0.0.1 - - [07/Aug/2026 16:39:29] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:36443 ./ Release [462 B] 127.0.0.1 - - [07/Aug/2026 16:39:29] code 404, message File not found 127.0.0.1 - - [07/Aug/2026 16:39:29] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:36443 ./ Release.gpg 127.0.0.1 - - [07/Aug/2026 16:39:29] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:36443 ./ Packages [239 kB] Fetched 239 kB in 0s (5315 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [07/Aug/2026 16:39:29] "GET /./gcc-16-base_16.1.0-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:29] "GET /./libc-gconv-modules-extra_2.42-17_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libc6_2.42-17_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libgcc-s1_16.1.0-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./mawk_1.3.4.20260302-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./base-files_14.2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libtinfo6_6.6%2b20260608-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./debianutils_5.23.2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./bash_5.3-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libacl1_2.4.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libattr1_2.6.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libgmp10_6.3.0%2bdfsg-5%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libpcre2-8-0_10.46-1%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libselinux1_3.11-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libzstd1_1.5.7%2bdfsg-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./zlib1g_1.3.dfsg%2breally1.3.2-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libssl3t64_3.6.3-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./openssl-provider-legacy_3.6.3-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./libsystemd0_261.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./coreutils_9.10-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./dash_0.5.12-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./diffutils_3.12-1_riscv64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [07/Aug/2026 16:39:30] "GET /./sysvinit-utils_3.18-1_riscv64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.TNTaZyzWjH 127.0.0.1 - - [07/Aug/2026 16:39:34] code 404, message File not found 127.0.0.1 - - [07/Aug/2026 16:39:34] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:36443 ./ InRelease 127.0.0.1 - - [07/Aug/2026 16:39:34] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:36443 ./ Release 127.0.0.1 - - [07/Aug/2026 16:39:34] code 404, message File not found 127.0.0.1 - - [07/Aug/2026 16:39:34] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:36443 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./gettext_1.0-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./po-debconf_1.0.22_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./debhelper_14.3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libpkgconf7_2.5.1-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./pkgconf-bin_2.5.1-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./pkgconf_2.5.1-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libgpg-error0_1.61-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libassuan9_3.0.2-2%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libgpg-error-dev_1.61-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libassuan-dev_3.0.2-2%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libgcrypt20_1.12.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./readline-common_8.3-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libreadline8t64_8.3-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./gpgconf_2.4.9-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libidn2-0_2.3.8-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libffi8_3.7.1-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libp11-kit0_0.26.4-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libtasn1-6_4.21.0-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libgnutls30t64_3.8.13-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libksba8_1.8.0-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libsasl2-modules-db_2.1.28%2bdfsg1-11_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libsasl2-2_2.1.28%2bdfsg1-11_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libldap2_2.6.13%2bdfsg-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libnpth0t64_1.8-3%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./dirmngr_2.4.9-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./gnupg-l10n_2.4.9-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libsqlite3-0_3.53.4-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./gpg_2.4.9-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libncursesw6_6.6%2b20260608-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./pinentry-curses_1.3.3-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./gpg-agent_2.4.9-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./gpgsm_2.4.9-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./gnupg_2.4.9-7_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libgpgme45_2.1.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libgpgme-dev_2.1.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libgmpxx4ldbl_6.3.0%2bdfsg-5%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./libgmp-dev_6.3.0%2bdfsg-5%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:23] "GET /./nettle-dev_3.10.2-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./libsecrecy-dev_0.0.5%2bds-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./libboost-atomic1.90.0_1.90.0-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./gcc-15-base_15.3.0-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./libgcc-15-dev_15.3.0-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./zlib1g-dev_1.3.dfsg%2breally1.3.2-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./libstdc%2b%2b-15-dev_15.3.0-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./libboost1.90-dev_1.90.0-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./libboost-atomic1.90-dev_1.90.0-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./libboost-atomic-dev_1.90.0.2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [07/Aug/2026 16:40:24] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpwikmehrq/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.TNTaZyzWjH Reading package lists... Building dependency tree... Reading state information... libgcc-16-dev is already the newest version (16.1.0-3). libgcc-16-dev set to manually installed. libsecrecy-dev is already the newest version (0.0.5+ds-5). libsecrecy-dev set to manually installed. libcc1-0 is already the newest version (16.1.0-3). libcc1-0 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b2). libffi8 is already the newest version (3.7.1-2). libffi8 set to manually installed. g++-riscv64-linux-gnu is already the newest version (4:16.1.0-3). g++-riscv64-linux-gnu set to manually installed. debian-archive-keyring is already the newest version (2025.1). debian-archive-keyring set to manually installed. gcc-16 is already the newest version (16.1.0-3). gcc-16 set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. cpp-16 is already the newest version (16.1.0-3). cpp-16 set to manually installed. libsframe3 is already the newest version (2.47-2). libsframe3 set to manually installed. libudev1 is already the newest version (261.2-1). patch is already the newest version (2.8-2). patch set to manually installed. gcc-riscv64-linux-gnu is already the newest version (4:16.1.0-3). gcc-riscv64-linux-gnu set to manually installed. gpg is already the newest version (2.4.9-7). gpg set to manually installed. libboost-atomic1.90.0 is already the newest version (1.90.0-6). libboost-atomic1.90.0 set to manually installed. g++ is already the newest version (4:16.1.0-3). g++ set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. g++-16-riscv64-linux-gnu is already the newest version (16.1.0-3). g++-16-riscv64-linux-gnu set to manually installed. debhelper is already the newest version (14.3). debhelper set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-11). libsasl2-2 set to manually installed. libmagic1t64 is already the newest version (1:5.47-4). libmagic1t64 set to manually installed. libgpgme45 is already the newest version (2.1.2-1). libgpgme45 set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. libidn2-0 is already the newest version (2.3.8-5). libidn2-0 set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). man-db is already the newest version (2.13.1-1). man-db set to manually installed. libgprofng0 is already the newest version (2.47-2). libgprofng0 set to manually installed. libuuid1 is already the newest version (2.42.2-2). libgpgme-dev is already the newest version (2.1.2-1). libgpgme-dev set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. libgcc-15-dev is already the newest version (15.3.0-2). libgcc-15-dev set to manually installed. sysvinit-utils is already the newest version (3.18-1). dwz is already the newest version (0.17-1). dwz set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5+b2). libgmpxx4ldbl set to manually installed. cpp-riscv64-linux-gnu is already the newest version (4:16.1.0-3). cpp-riscv64-linux-gnu set to manually installed. file is already the newest version (1:5.47-4). file set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. libgcrypt20 is already the newest version (1.12.2-1). libgcrypt20 set to manually installed. autopoint is already the newest version (1.0-3). autopoint set to manually installed. libtasn1-6 is already the newest version (4.21.0-2+b1). libtasn1-6 set to manually installed. gpgconf is already the newest version (2.4.9-7). gpgconf set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. hostname is already the newest version (3.25). zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. libattr1 is already the newest version (1:2.6.0-1). libatomic1 is already the newest version (16.1.0-3). libatomic1 set to manually installed. gcc is already the newest version (4:16.1.0-3). gcc set to manually installed. libc-bin is already the newest version (2.42-17). libc-dev-bin is already the newest version (2.42-17). libc-dev-bin set to manually installed. ncurses-base is already the newest version (6.6+20260608-2). binutils is already the newest version (2.47-2). binutils set to manually installed. gettext is already the newest version (1.0-3). gettext set to manually installed. debconf is already the newest version (1.5.92). gzip is already the newest version (1.13-1). gnupg-l10n is already the newest version (2.4.9-7). gnupg-l10n set to manually installed. pinentry-curses is already the newest version (1.3.3-2). pinentry-curses set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-11). libsasl2-modules-db set to manually installed. libboost1.90-dev is already the newest version (1.90.0-6). libboost1.90-dev set to manually installed. mawk is already the newest version (1.3.4.20260302-1). libpkgconf7 is already the newest version (2.5.1-4). libpkgconf7 set to manually installed. dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. binutils-riscv64-linux-gnu is already the newest version (2.47-2). binutils-riscv64-linux-gnu set to manually installed. libmd0 is already the newest version (1.2.0-2). libcap-ng0 is already the newest version (0.9.3-1+b1). libsystemd0 is already the newest version (261.2-1). libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libboost-atomic1.90-dev is already the newest version (1.90.0-6). libboost-atomic1.90-dev set to manually installed. libc-gconv-modules-extra is already the newest version (2.42-17). dirmngr is already the newest version (2.4.9-7). dirmngr set to manually installed. liblz4-1 is already the newest version (1.10.0-10). liblz4-1 set to manually installed. gnupg is already the newest version (2.4.9-7). gnupg set to manually installed. libpcre2-8-0 is already the newest version (10.46-1+b2). libbinutils is already the newest version (2.47-2). libbinutils set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1+b1). libhogweed6t64 set to manually installed. g++-16 is already the newest version (16.1.0-3). g++-16 set to manually installed. grep is already the newest version (3.12-1). libtool is already the newest version (2.5.4-11). libtool set to manually installed. libassuan9 is already the newest version (3.0.2-2+b2). libassuan9 set to manually installed. libsmartcols1 is already the newest version (2.42.2-2). libaudit1 is already the newest version (1:4.1.2-1+b1). liblsan0 is already the newest version (16.1.0-3). liblsan0 set to manually installed. libstdc++6 is already the newest version (16.1.0-3). libstdc++6 set to manually installed. libstdc++-15-dev is already the newest version (15.3.0-2). libstdc++-15-dev set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. gcc-16-riscv64-linux-gnu is already the newest version (16.1.0-3). gcc-16-riscv64-linux-gnu set to manually installed. perl-modules-5.42 is already the newest version (5.42.2-3). perl-modules-5.42 set to manually installed. gcc-16-base is already the newest version (16.1.0-3). libasan8 is already the newest version (16.1.0-3). libasan8 set to manually installed. libssl3t64 is already the newest version (3.6.3-1). libnpth0t64 is already the newest version (1.8-3+b2). libnpth0t64 set to manually installed. libacl1 is already the newest version (2.4.0-1). openssl-provider-legacy is already the newest version (3.6.3-1). libcrypt1 is already the newest version (1:4.5.1-1+b1). libblkid1 is already the newest version (2.42.2-2). libsqlite3-0 is already the newest version (3.53.4-2). libsqlite3-0 set to manually installed. dpkg is already the newest version (1.23.7). bash is already the newest version (5.3-3). dh-strip-nondeterminism is already the newest version (1.15.1-1). dh-strip-nondeterminism set to manually installed. dash is already the newest version (0.5.12-12). libitm1 is already the newest version (16.1.0-3). libitm1 set to manually installed. libtinfo6 is already the newest version (6.6+20260608-2). m4 is already the newest version (1.4.21-1). m4 set to manually installed. libselinux1 is already the newest version (3.11-2). libgpg-error0 is already the newest version (1.61-3). libgpg-error0 set to manually installed. libtsan2 is already the newest version (16.1.0-3). libtsan2 set to manually installed. debianutils is already the newest version (5.23.2). libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. libctf-nobfd0 is already the newest version (2.47-2). libctf-nobfd0 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. libksba8 is already the newest version (1.8.0-3). libksba8 set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. perl-base is already the newest version (5.42.2-3). libctf0 is already the newest version (2.47-2). libctf0 set to manually installed. libgmp-dev is already the newest version (2:6.3.0+dfsg-5+b2). libgmp-dev set to manually installed. libisl23 is already the newest version (0.28-1). libisl23 set to manually installed. libelf1t64 is already the newest version (0.195-1). libelf1t64 set to manually installed. util-linux is already the newest version (2.42.2-2). libpam-modules is already the newest version (1.7.0-8). libpam-modules-bin is already the newest version (1.7.0-8). libgomp1 is already the newest version (16.1.0-3). libgomp1 set to manually installed. nettle-dev is already the newest version (3.10.2-1+b1). nettle-dev set to manually installed. ncurses-bin is already the newest version (6.6+20260608-2). libgnutls30t64 is already the newest version (3.8.13-1). libgnutls30t64 set to manually installed. libjansson4 is already the newest version (2.15.1-1). libjansson4 set to manually installed. perl is already the newest version (5.42.2-3). perl set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libpam0g is already the newest version (1.7.0-8). sed is already the newest version (4.9-3). libxxhash0 is already the newest version (0.8.3-2+b2). libxxhash0 set to manually installed. apt is already the newest version (3.3.2). apt set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. coreutils is already the newest version (9.10-1). libnettle8t64 is already the newest version (3.10.2-1+b1). libnettle8t64 set to manually installed. libncursesw6 is already the newest version (6.6+20260608-2). libncursesw6 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.1-1). libfile-stripnondeterminism-perl set to manually installed. groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. pkgconf is already the newest version (2.5.1-4). pkgconf set to manually installed. libpam-runtime is already the newest version (1.7.0-8). libmagic-mgc is already the newest version (1:5.47-4). libmagic-mgc set to manually installed. findutils is already the newest version (4.11.0-2). libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. libapt-pkg7.0 is already the newest version (3.3.2). libapt-pkg7.0 set to manually installed. rpcsvc-proto is already the newest version (1.4.4-1). rpcsvc-proto set to manually installed. libmount1 is already the newest version (2.42.2-2). tar is already the newest version (1.35+dfsg-4). pkgconf-bin is already the newest version (2.5.1-4). pkgconf-bin set to manually installed. libc6 is already the newest version (2.42-17). libstdc++-16-dev is already the newest version (16.1.0-3). libstdc++-16-dev set to manually installed. bsdextrautils is already the newest version (2.42.2-2). bsdextrautils set to manually installed. gcc-15-base is already the newest version (15.3.0-2). gcc-15-base set to manually installed. gettext-base is already the newest version (1.0-3). gettext-base set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. liblzma5 is already the newest version (5.8.3-1). libperl5.42 is already the newest version (5.42.2-3). libperl5.42 set to manually installed. base-passwd is already the newest version (3.6.8). libassuan-dev is already the newest version (3.0.2-2+b2). libassuan-dev set to manually installed. d-shlibs is already the newest version (0.109). d-shlibs set to manually installed. gpgsm is already the newest version (2.4.9-7). gpgsm set to manually installed. libgcc-s1 is already the newest version (16.1.0-3). sqv is already the newest version (1.4.0-1). sqv set to manually installed. cpp-16-riscv64-linux-gnu is already the newest version (16.1.0-3). cpp-16-riscv64-linux-gnu set to manually installed. base-files is already the newest version (14.2). libdebconfclient0 is already the newest version (0.283). libboost-atomic-dev is already the newest version (1.90.0.2). libboost-atomic-dev set to manually installed. libc6-dev is already the newest version (2.42-17). libc6-dev set to manually installed. linux-libc-dev is already the newest version (7.1.6-1). linux-libc-dev set to manually installed. libdebhelper-perl is already the newest version (14.3). libdebhelper-perl set to manually installed. libldap2 is already the newest version (2.6.13+dfsg-1+b1). libldap2 set to manually installed. cpp is already the newest version (4:16.1.0-3). cpp set to manually installed. automake is already the newest version (1:1.18.1-4). automake set to manually installed. libgpg-error-dev is already the newest version (1.61-3). libgpg-error-dev set to manually installed. libp11-kit0 is already the newest version (0.26.4-1). libp11-kit0 set to manually installed. libubsan1 is already the newest version (16.1.0-3). libubsan1 set to manually installed. diffutils is already the newest version (1:3.12-1). libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. libxml2-16 is already the newest version (2.15.3+dfsg-1). libxml2-16 set to manually installed. binutils-common is already the newest version (2.47-2). binutils-common set to manually installed. init-system-helpers is already the newest version (1.69). gpg-agent is already the newest version (2.4.9-7). gpg-agent set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-4). autoconf is already the newest version (2.73-2). autoconf set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.TNTaZyzWjH (Reading database ... 33101 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.TNTaZyzWjH I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.TNTaZyzWjH I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.TNTaZyzWjH... I: success in 358.6312 seconds Downloading dependency 131 of 189: perl:riscv64=5.42.2-3 Downloading dependency 132 of 189: libmpfr6:riscv64=4.2.2-3 Downloading dependency 133 of 189: libpam0g:riscv64=1.7.0-8 Downloading dependency 134 of 189: sed:riscv64=4.9-3 Downloading dependency 135 of 189: libxxhash0:riscv64=0.8.3-2+b2 Downloading dependency 136 of 189: apt:riscv64=3.3.2 Downloading dependency 137 of 189: libuchardet0:riscv64=0.0.8-2+b2 Downloading dependency 138 of 189: coreutils:riscv64=9.10-1 Downloading dependency 139 of 189: libnettle8t64:riscv64=3.10.2-1+b1 Downloading dependency 140 of 189: libncursesw6:riscv64=6.6+20260608-2 Downloading dependency 141 of 189: libfile-stripnondeterminism-perl:riscv64=1.15.1-1 Downloading dependency 142 of 189: groff-base:riscv64=1.24.1-1 Downloading dependency 143 of 189: pkgconf:riscv64=2.5.1-4 Downloading dependency 144 of 189: libpam-runtime:riscv64=1.7.0-8 Downloading dependency 145 of 189: libmagic-mgc:riscv64=1:5.47-4 Downloading dependency 146 of 189: findutils:riscv64=4.11.0-2 Downloading dependency 147 of 189: libdb5.3t64:riscv64=5.3.28+dfsg2-11+b1 Downloading dependency 148 of 189: libmpc3:riscv64=1.3.1-3 Downloading dependency 149 of 189: libapt-pkg7.0:riscv64=3.3.2 Downloading dependency 150 of 189: rpcsvc-proto:riscv64=1.4.4-1 Downloading dependency 151 of 189: libmount1:riscv64=2.42.2-2 Downloading dependency 152 of 189: tar:riscv64=1.35+dfsg-4 Downloading dependency 153 of 189: pkgconf-bin:riscv64=2.5.1-4 Downloading dependency 154 of 189: libc6:riscv64=2.42-17 Downloading dependency 155 of 189: libstdc++-16-dev:riscv64=16.1.0-3 Downloading dependency 156 of 189: bsdextrautils:riscv64=2.42.2-2 Downloading dependency 157 of 189: gcc-15-base:riscv64=15.3.0-2 Downloading dependency 158 of 189: gettext-base:riscv64=1.0-3 Downloading dependency 159 of 189: intltool-debian:riscv64=0.35.0+20060710.6 Downloading dependency 160 of 189: liblzma5:riscv64=5.8.3-1 Downloading dependency 161 of 189: libperl5.42:riscv64=5.42.2-3 Downloading dependency 162 of 189: base-passwd:riscv64=3.6.8 Downloading dependency 163 of 189: libassuan-dev:riscv64=3.0.2-2+b2 Downloading dependency 164 of 189: d-shlibs:riscv64=0.109 Downloading dependency 165 of 189: gpgsm:riscv64=2.4.9-7 Downloading dependency 166 of 189: libgcc-s1:riscv64=16.1.0-3 Downloading dependency 167 of 189: sqv:riscv64=1.4.0-1 Downloading dependency 168 of 189: cpp-16-riscv64-linux-gnu:riscv64=16.1.0-3 Downloading dependency 169 of 189: base-files:riscv64=14.2 Downloading dependency 170 of 189: libdebconfclient0:riscv64=0.283 Downloading dependency 171 of 189: libboost-atomic-dev:riscv64=1.90.0.2 Downloading dependency 172 of 189: libc6-dev:riscv64=2.42-17 Downloading dependency 173 of 189: linux-libc-dev:riscv64=7.1.6-1 Downloading dependency 174 of 189: libdebhelper-perl:riscv64=14.3 Downloading dependency 175 of 189: libldap2:riscv64=2.6.13+dfsg-1+b1 Downloading dependency 176 of 189: cpp:riscv64=4:16.1.0-3 Downloading dependency 177 of 189: automake:riscv64=1:1.18.1-4 Downloading dependency 178 of 189: libgpg-error-dev:riscv64=1.61-3 Downloading dependency 179 of 189: libp11-kit0:riscv64=0.26.4-1 Downloading dependency 180 of 189: libubsan1:riscv64=16.1.0-3 Downloading dependency 181 of 189: diffutils:riscv64=1:3.12-1 Downloading dependency 182 of 189: libgmp10:riscv64=2:6.3.0+dfsg-5+b2 Downloading dependency 183 of 189: xz-utils:riscv64=5.8.3-1 Downloading dependency 184 of 189: libxml2-16:riscv64=2.15.3+dfsg-1 Downloading dependency 185 of 189: binutils-common:riscv64=2.47-2 Downloading dependency 186 of 189: init-system-helpers:riscv64=1.69 Downloading dependency 187 of 189: gpg-agent:riscv64=2.4.9-7 Downloading dependency 188 of 189: libzstd1:riscv64=1.5.7+dfsg-4 Downloading dependency 189 of 189: autoconf:riscv64=2.73-2 env --chdir=/srv/rebuilderd/tmp/rebuilderdzjNKHo/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1785959988 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildHk3A1M/debrebuild.sbuildrc.7fdHE7EGzt10 sbuild --build=riscv64 --host=riscv64 --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildHk3A1M/debrebuild.tar.xVKH2NpkTWFl --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=libmaus2-2.0.813+ds /srv/rebuilderd/tmp/rebuilderdzjNKHo/inputs/libmaus2_2.0.813+ds-6.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u4 (28 December 2025) on localhost +==============================================================================+ | libmaus2 2.0.813+ds-6 (riscv64) Fri, 07 Aug 2026 08:45:29 +0000 | +==============================================================================+ Package: libmaus2 Version: 2.0.813+ds-6 Source Version: 2.0.813+ds-6 Distribution: unstable Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildHk3A1M/debrebuild.tar.xVKH2NpkTWFl to /srv/rebuilderd/tmp/tmp.sbuild.qp_zXIgYI0... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 07 Aug 2026 08:46:40 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdzjNKHo/inputs/libmaus2_2.0.813+ds-6.dsc exists in /srv/rebuilderd/tmp/rebuilderdzjNKHo/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 07 Aug 2026 08:46:48 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev, build-essential Filtered Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-cq7VQJ/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 07 Aug 2026 08:47:05 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment Fri, 07 Aug 2026 08:47:05 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.6.87-win2030 #2025.04.20.18.43+bb0c69aea SMP Sun Apr 20 18:58:14 UTC 2025 riscv64 (riscv64) Toolchain package versions: binutils_2.47-2 dpkg-dev_1.23.7 g++-16_16.1.0-3 gcc-16_16.1.0-3 libc6-dev_2.42-17 libstdc++-15-dev_15.3.0-2 libstdc++-16-dev_16.1.0-3 libstdc++6_16.1.0-3 linux-libc-dev_7.1.6-1 Package versions: apt_3.3.2 autoconf_2.73-2 automake_1:1.18.1-4 autopoint_1.0-3 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-3 binutils_2.47-2 binutils-common_2.47-2 binutils-riscv64-linux-gnu_2.47-2 bsdextrautils_2.42.2-2 build-essential_12.12 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.1.0-3 cpp-16-riscv64-linux-gnu_16.1.0-3 cpp-riscv64-linux-gnu_4:16.1.0-3 d-shlibs_0.109 dash_0.5.12-12 debconf_1.5.92 debhelper_14.3 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_22 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-7 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-2 g++_4:16.1.0-3 g++-16_16.1.0-3 g++-16-riscv64-linux-gnu_16.1.0-3 g++-riscv64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-15-base_15.3.0-2 gcc-16_16.1.0-3 gcc-16-base_16.1.0-3 gcc-16-riscv64-linux-gnu_16.1.0-3 gcc-riscv64-linux-gnu_4:16.1.0-3 gettext_1.0-3 gettext-base_1.0-3 gnupg_2.4.9-7 gnupg-l10n_2.4.9-7 gpg_2.4.9-7 gpg-agent_2.4.9-7 gpgconf_2.4.9-7 gpgsm_2.4.9-7 grep_3.12-1 groff-base_1.24.1-1 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libapt-pkg7.0_3.3.2 libarchive-zip-perl_1.68-1 libasan8_16.1.0-3 libassuan-dev_3.0.2-2+b2 libassuan9_3.0.2-2+b2 libatomic1_16.1.0-3 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libbinutils_2.47-2 libblkid1_2.42.2-2 libboost-atomic-dev_1.90.0.2 libboost-atomic1.90-dev_1.90.0-6 libboost-atomic1.90.0_1.90.0-6 libboost1.90-dev_1.90.0-6 libbz2-1.0_1.0.8-6+b2 libc-bin_2.42-17 libc-dev-bin_2.42-17 libc-gconv-modules-extra_2.42-17 libc6_2.42-17 libc6-dev_2.42-17 libcap-ng0_0.9.3-1+b1 libcc1-0_16.1.0-3 libcrypt1_1:4.5.1-1+b1 libctf-nobfd0_2.47-2 libctf0_2.47-2 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.3 libdpkg-perl_1.23.7 libelf1t64_0.195-1 libffi8_3.7.1-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-15-dev_15.3.0-2 libgcc-16-dev_16.1.0-3 libgcc-s1_16.1.0-3 libgcrypt20_1.12.2-1 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgmp-dev_2:6.3.0+dfsg-5+b2 libgmp10_2:6.3.0+dfsg-5+b2 libgmpxx4ldbl_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.1.0-3 libgpg-error-dev_1.61-3 libgpg-error0_1.61-3 libgpgme-dev_2.1.2-1 libgpgme45_2.1.2-1 libgprofng0_2.47-2 libhogweed6t64_3.10.2-1+b1 libidn2-0_2.3.8-5 libisl23_0.28-1 libitm1_16.1.0-3 libjansson4_2.15.1-1 libksba8_1.8.0-3 libldap2_2.6.13+dfsg-1+b1 liblsan0_16.1.0-3 liblz4-1_1.10.0-10 liblzma5_5.8.3-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmount1_2.42.2-2 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnpth0t64_1.8-3+b2 libp11-kit0_0.26.4-1 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.46-1+b2 libperl5.42_5.42.2-3 libpipeline1_1.5.8-3 libpkgconf7_2.5.1-4 libreadline8t64_8.3-4 libsasl2-2_2.1.28+dfsg1-11 libsasl2-modules-db_2.1.28+dfsg1-11 libsecrecy-dev_0.0.5+ds-5 libselinux1_3.11-2 libsframe3_2.47-2 libsmartcols1_2.42.2-2 libsqlite3-0_3.53.4-2 libssl3t64_3.6.3-1 libstdc++-15-dev_15.3.0-2 libstdc++-16-dev_16.1.0-3 libstdc++6_16.1.0-3 libsystemd0_261.2-1 libtasn1-6_4.21.0-2+b1 libtinfo6_6.6+20260608-2 libtool_2.5.4-11 libtsan2_16.1.0-3 libubsan1_16.1.0-3 libuchardet0_0.0.8-2+b2 libudev1_261.2-1 libunistring5_1.4.2-1 libuuid1_2.42.2-2 libxml2-16_2.15.3+dfsg-1 libxxhash0_0.8.3-2+b2 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.1.6-1 m4_1.4.21-1 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20260302-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 nettle-dev_3.10.2-1+b1 openssl-provider-legacy_3.6.3-1 patch_2.8-2 perl_5.42.2-3 perl-base_5.42.2-3 perl-modules-5.42_5.42.2-3 pinentry-curses_1.3.3-2 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sed_4.9-3 sensible-utils_0.0.26 sqv_1.4.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 util-linux_2.42.2-2 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Fri, 07 Aug 2026 08:47:06 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libmaus2 Binary: libmaus2-2, libmaus2-dev Architecture: any Version: 2.0.813+ds-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller , Étienne Mollier Homepage: https://gitlab.com/german.tischler/libmaus2 Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/med-team/libmaus2 Vcs-Git: https://salsa.debian.org/med-team/libmaus2.git Build-Depends: debhelper-compat (= 14), d-shlibs, libboost-atomic-dev, libsecrecy-dev, pkgconf, zlib1g-dev Package-List: libmaus2-2 deb libs optional arch=any libmaus2-dev deb libdevel optional arch=any Checksums-Sha1: 4ad42d0c76fc0e3cc06d9067049dd5acfd986984 1655972 libmaus2_2.0.813+ds.orig.tar.xz bdbdb6aff13e41a83105800ad3d3d126a98015a0 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Checksums-Sha256: 8ad66707ad0881638e67f51ba5b2182fd0ad194601025f319c87af77d933b7c9 1655972 libmaus2_2.0.813+ds.orig.tar.xz fe6a03965722fb86ebf12b39b888a17e22bd47400644273833f56d0e1a0fad70 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Files: fd8774f8aa644f77bfdca25fe33348e1 1655972 libmaus2_2.0.813+ds.orig.tar.xz 8bc079315adcddd3ad6c0ca13292ad29 10260 libmaus2_2.0.813+ds-6.debian.tar.xz Dgit: c1fe707985fbeeae20dc119c0f10d5859b640823 debian archive/debian/2.0.813+ds-6 https://git.dgit.debian.org/libmaus2 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmpzoqQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrPuQ//TrZ/sTYoK9aDwdN1iazLehlrKDOt 3PZ8a7CtM3Nt4rHp3//pOwo8jicrf14pjFivOgltZpQXCdSjNVu8KaxS84qT0Qko dNC0kPrQ7+ddHtg5/v7l4l/Ea9fHkUl4FOmIKHk+fGmvvbR/iUxrpq36iUY3ePiv wNKQKjf/KIKzv87QCFJUHXHn3BBQb+oTZybb3m1vIk2d3it55Np9fQbB78BvTS0f 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/usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting libmaus2 in /build/reproducible-path/libmaus2-2.0.813+ds dpkg-source: info: unpacking libmaus2_2.0.813+ds.orig.tar.xz dpkg-source: info: unpacking libmaus2_2.0.813+ds-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add-support-for-loong64.patch dpkg-source: info: applying gcc-15.patch dpkg-source: info: applying unlock-stdc++.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1785959988 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package libmaus2 dpkg-buildpackage: info: source version 2.0.813+ds-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: no obvious need to run autopoint autoreconf: running: aclocal --force -I m4 autoreconf: configure.ac: tracing autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: configure.ac: no need to run autopoint (confirmed) autoreconf: running: aclocal --force -I m4 autoreconf: running: /usr/bin/autoconf --force configure.ac:4: warning: The macro 'AC_CANONICAL_SYSTEM' is obsolete. configure.ac:4: You should run autoupdate. ./lib/autoconf/general.m4:2137: AC_CANONICAL_SYSTEM is expanded from... configure.ac:4: the top level configure.ac:6: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:6: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:6: the top level configure.ac:9: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:9: You should use the 'AC_CONFIG_HEADERS' macro instead. aclocal.m4:1059: AM_CONFIG_HEADER is expanded from... configure.ac:9: the top level configure.ac:77: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:77: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:77: the top level configure.ac:153: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:153: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:153: the top level configure.ac:211: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:211: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:211: the top level configure.ac:247: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:247: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:247: the top level configure.ac:276: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:276: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:276: the top level configure.ac:331: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:331: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:331: the top level configure.ac:386: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:386: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:386: the top level configure.ac:565: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:565: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:565: the top level configure.ac:577: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:577: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:577: the top level configure.ac:589: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:589: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:589: the top level configure.ac:601: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:601: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:601: the top level configure.ac:613: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:613: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:613: the top level configure.ac:627: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:627: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:627: the top level configure.ac:641: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:641: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:641: the top level configure.ac:655: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:655: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:655: the top level configure.ac:669: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:669: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:669: the top level configure.ac:683: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:683: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:683: the top level configure.ac:696: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:696: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:696: the top level configure.ac:713: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:713: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:713: the top level configure.ac:727: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:727: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:727: the top level configure.ac:743: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:743: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:743: the top level configure.ac:759: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:759: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:759: the top level configure.ac:773: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:773: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:773: the top level configure.ac:786: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:786: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:786: the top level configure.ac:800: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:800: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:800: the top level configure.ac:813: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:813: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:813: the top level configure.ac:829: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:829: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:829: the top level configure.ac:842: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:842: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:842: the top level configure.ac:856: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:856: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:856: the top level configure.ac:870: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:870: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:870: the top level configure.ac:884: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:884: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:884: the top level configure.ac:900: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:900: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:900: the top level configure.ac:941: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:941: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:941: the top level configure.ac:958: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:958: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:958: the top level configure.ac:977: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:977: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:977: the top level configure.ac:992: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:992: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:992: the top level configure.ac:1009: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1009: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1009: the top level configure.ac:1027: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1027: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1027: the top level configure.ac:1045: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1045: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1045: the top level configure.ac:1062: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1062: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1062: the top level configure.ac:1079: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1079: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1079: the top level configure.ac:1096: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1096: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1096: the top level configure.ac:1113: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1113: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1113: the top level configure.ac:1146: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1146: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1146: the top level configure.ac:1163: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1163: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1163: the top level configure.ac:1180: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1180: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1180: the top level configure.ac:1213: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1213: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1213: the top level configure.ac:1231: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1231: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1231: the top level configure.ac:1249: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1249: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1249: the top level configure.ac:1269: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1269: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1269: the top level configure.ac:1289: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1289: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1289: the top level configure.ac:1309: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1309: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1309: the top level configure.ac:1329: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1329: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1329: the top level configure.ac:1349: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1349: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1349: the top level configure.ac:1369: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1369: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1369: the top level configure.ac:1389: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1389: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1389: the top level configure.ac:1426: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1426: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1426: the top level configure.ac:1446: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1446: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1446: the top level configure.ac:1466: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1466: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1466: the top level configure.ac:1486: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1486: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1486: the top level configure.ac:1525: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1525: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1525: the top level configure.ac:1545: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1545: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1545: the top level configure.ac:1566: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1566: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1566: the top level configure.ac:1586: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1586: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1586: the top level configure.ac:1601: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1601: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1601: the top level configure.ac:1677: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1677: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1677: the top level configure.ac:1686: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1686: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1686: the top level configure.ac:1702: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1702: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1702: the top level configure.ac:1718: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1718: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1718: the top level configure.ac:1731: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1731: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1731: the top level configure.ac:1746: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1746: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1746: the top level configure.ac:1760: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1760: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1760: the top level configure.ac:1774: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1774: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1774: the top level configure.ac:1787: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1787: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1787: the top level configure.ac:1806: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1806: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1806: the top level configure.ac:1887: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:1887: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:689: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:696: AS_IF is expanded from... ./lib/autoconf/general.m4:2305: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2326: AC_CACHE_CHECK is expanded from... m4/ax_openmp.m4:68: AX_OPENMP is expanded from... configure.ac:1887: the top level configure.ac:1897: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1897: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1897: the top level configure.ac:1913: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1913: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1913: the top level configure.ac:1933: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:1933: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:1933: the top level configure.ac:2315: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:2315: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:2315: the top level configure.ac:2354: warning: The macro 'AC_TRY_COMPILE' is obsolete. configure.ac:2354: You should run autoupdate. ./lib/autoconf/general.m4:2903: AC_TRY_COMPILE is expanded from... configure.ac:2354: the top level configure.ac:2711: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2711: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2711: the top level configure.ac:2779: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2779: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2779: the top level configure.ac:2808: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2808: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2808: the top level configure.ac:2824: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2824: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2824: the top level configure.ac:2990: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:2990: You should run autoupdate. ./lib/autoconf/general.m4:2976: AC_TRY_LINK is expanded from... configure.ac:2990: the top level configure.ac:3215: warning: AC_OUTPUT should be used without arguments. configure.ac:3215: You should run autoupdate. autoreconf: running: /usr/bin/autoheader --force autoreconf: running: automake --add-missing --copy --force-missing configure.ac:6: installing './compile' configure.ac:4: installing './config.guess' configure.ac:4: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' autoreconf: configure.ac: not running make: --make not given autoreconf: Leaving directory '.' dh_auto_configure -a ./configure --build=riscv64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: Configuring for source in directory . checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking target system type... riscv64-unknown-linux-gnu checking how to print strings... printf checking for gcc... riscv64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether riscv64-linux-gnu-gcc accepts -g... yes checking for riscv64-linux-gnu-gcc option to enable C23 features... none needed checking whether riscv64-linux-gnu-gcc understands -c and -o together... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by riscv64-linux-gnu-gcc... /usr/bin/riscv64-linux-gnu-ld checking if the linker (/usr/bin/riscv64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert riscv64-unknown-linux-gnu file names to riscv64-unknown-linux-gnu format... func_convert_file_noop checking how to convert riscv64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/riscv64-linux-gnu-ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/nm -B output from riscv64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if riscv64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for riscv64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if riscv64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if riscv64-linux-gnu-gcc static flag -static works... yes checking if riscv64-linux-gnu-gcc supports -c -o file.o... yes checking if riscv64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the riscv64-linux-gnu-gcc linker (/usr/bin/riscv64-linux-gnu-ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking xargs -n works... yes checking how to create a pax tar archive... gnutar checking dependency style of riscv64-linux-gnu-gcc... none checking whether we are cross compiling... no checking for bash... /usr/bin/bash checking for base64... /usr/bin/base64 checking for gcc... (cached) riscv64-linux-gnu-gcc checking whether the compiler supports GNU C... (cached) yes checking whether riscv64-linux-gnu-gcc accepts -g... (cached) yes checking for riscv64-linux-gnu-gcc option to enable C23 features... (cached) none needed checking whether riscv64-linux-gnu-gcc understands -c and -o together... (cached) yes checking whether the compiler supports GNU C++... yes checking whether riscv64-linux-gnu-g++ accepts -g... yes checking how to run the C++ preprocessor... riscv64-linux-gnu-g++ -E checking for ld used by riscv64-linux-gnu-g++... /usr/bin/riscv64-linux-gnu-ld checking if the linker (/usr/bin/riscv64-linux-gnu-ld) is GNU ld... yes checking whether the riscv64-linux-gnu-g++ linker (/usr/bin/riscv64-linux-gnu-ld) supports shared libraries... yes checking for riscv64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if riscv64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if riscv64-linux-gnu-g++ static flag -static works... yes checking if riscv64-linux-gnu-g++ supports -c -o file.o... yes checking if riscv64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the riscv64-linux-gnu-g++ linker (/usr/bin/riscv64-linux-gnu-ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking dependency style of riscv64-linux-gnu-g++... none checking whether host cpu is x86_64... no checking whether host os is GNU/Linux... yes checking whether we are compiling for x86_64 CPU on GNU/Linux OS ... no checking size of unsigned long... 8 checking for winsock2.h... no checking for ws2tcpip.h... no checking for sys/wait.h... yes checking for sys/ioctl.h... yes checking for execinfo.h... yes checking for windows.h... no checking for unistd.h... (cached) yes checking for linux/sysctl.h... yes checking for features.h... yes checking for dlfcn.h... (cached) yes checking for sys/prctl.h... yes checking for libunwind.h... no checking for unw_backtrace in -lunwind... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib >= 0... yes checking for libcurl >= 7.47.0... no checking for parasail-1 >= 2.4.3... no checking for zlib >= 0... yes checking whether we can compile a zlib program... yes checking for snappy.h... no checking for libdeflate.h... no checking for GetProcessMemoryInfo... no checking for dlopen... yes checking for dlerror... yes checking for dlsym... yes checking for dlclose... yes checking for dlopen in -ldl... yes checking for dlerror in -ldl... yes checking for dlsym in -ldl... yes checking for dlclose in -ldl... yes checking whether we found the dlopen function anywhere... yes checking whether we found the dlerror function anywhere... yes checking whether we found the dlsym function anywhere... yes checking whether we found the dlclose function anywhere... yes checking whether we found all the functions required for dynamic modules somewhere... yes checking whether we need the dl library for any of the dl functions... no checking for backtrace... yes checking for gethostname... yes checking for fsync... yes checking for dup2... yes checking for execv... yes checking for mkstemp... yes checking for fcntl... yes checking for pipe... yes checking for fork... yes checking for symlink... yes checking for waitpid... yes checking for gethostbyname... yes checking for gethostbyname2... yes checking for prctl... yes checking whether SIGPIPE exists... yes checking whether SIGHUP exists... yes checking whether pid_t exists... yes checking whether getpid exists... yes checking whether O_RDONLY... yes checking whether O_WRONLY... yes checking whether O_RDWR... yes checking whether O_CREAT... yes checking whether O_TRUNC... yes checking whether OFF_T... yes checking whether lseek function exists... yes checking whether read function exists... yes checking whether fstat function exists... yes checking whether stat function exists... yes checking whether fstatfs function exists... yes checking whether sysconf function exists... yes checking whether write function exists... yes checking whether WIFEXITED exists... yes checking whether WEXITSTATUS exists... yes checking whether the C++ compiler supports the -msse4 flag... no checking whether the C++ compiler supports the -msse2 flag... no checking whether the C++ compiler supports the -mssse3 flag... no checking whether the C++ compiler supports the -msse4.1 flag... no checking whether the C++ compiler supports the -mavx flag... no checking whether the C++ compiler supports the -mavx2 flag... no checking for smmintrin.h... no checking for immintrin.h... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (X128/16 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/8 variant)... no checking whether the C++ compiler supports all intrinsics required for SIMD global alignment (Y256/16 variant)... no checking whether the C++ compiler supports all intrinsics required for one to many global alignment using AVX2... no checking whether the C++ compiler supports the -msse4 flag... no checking for open with 2 arguments... yes checking for open with 3 arguments... yes checking for close... yes checking for O_NONBLOCK... yes checking for O_LARGEFILE... yes checking for O_BINARY... no checking for ssize_t... yes checking for socklen_t... yes checking whether the C++ compiler supports the -W flag... yes checking whether the C++ compiler supports the -Wall flag... yes checking whether the C++ compiler supports the -Wnon-virtual-dtor flag... yes checking for OpenMP flag of C++ compiler... -fopenmp checking whether the C++ compiler supports the -rdynamic flag... yes checking whether std::unique_ptr exists... yes checking whether std::shared_ptr exists... yes checking whether std::unordered_map exists... yes checking whether std::unordered_set exists... yes checking whether std::move exists... yes checking whether std::filesystem exists... yes checking whether byte ordering is bigendian... no checking for psapi.h... no checking for fcntl.h... yes checking for libgen.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/vfs.h... yes checking for boost/smart_ptr/atomic_shared_ptr.hpp... yes checking whether std::atomic< std::shared_ptr<> > is supported... yes checking whether boost::atomic_shared_ptr< > is supported... yes configure: Using atomic from std libray checking whether we can compile a program using statfs... yes checking whether struct statfs has field f_iosize... no checking whether struct statfs has field f_bsize... yes checking whether the C++ compiler supports the -pthread flag... yes checking whether getpagesize is present... yes checking for unsigned __int128... yes checking whether we can compile a program using the gmp library... yes checking for libsecrecy >= 0.0.0... yes checking whether we can compile a libsecrecy program... yes checking for riscv64-linux-gnu-gcc option to support large files... none needed checking for declarations of fseeko and ftello... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating libmaus2.pc config.status: creating ubuntu.sh config.status: creating src/libmaus2/LibMausConfig.hpp config.status: creating test/Makefile config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build -a make -j4 make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make all-recursive make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' Making all in src make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-Phred.lo `test -f 'libmaus2/fastx/Phred.cpp' || echo './'`libmaus2/fastx/Phred.cpp /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderBase.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderBase.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderBase.cpp /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-StrCmpNum.lo `test -f 'libmaus2/bambam/StrCmpNum.cpp' || echo './'`libmaus2/bambam/StrCmpNum.cpp /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGenerator.lo `test -f 'libmaus2/util/TempFileNameGenerator.cpp' || echo './'`libmaus2/util/TempFileNameGenerator.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-Phred.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-StrCmpNum.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGenerator.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGenerator.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/Phred.cpp -o libmaus2/fastx/la-Phred.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-TempFileNameGeneratorState.lo `test -f 'libmaus2/util/TempFileNameGeneratorState.cpp' || echo './'`libmaus2/util/TempFileNameGeneratorState.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/TempFileNameGeneratorState.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/StrCmpNum.cpp -o libmaus2/bambam/la-StrCmpNum.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-ArgInfo.lo `test -f 'libmaus2/util/ArgInfo.cpp' || echo './'`libmaus2/util/ArgInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-ArgInfo.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from libmaus2/bambam/BamAlignmentDecoderBase.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/ArgInfo.cpp -o libmaus2/util/la-ArgInfo.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderBase.cpp -o libmaus2/bambam/la-BamAlignmentDecoderBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-BitList.lo `test -f 'libmaus2/util/BitList.cpp' || echo './'`libmaus2/util/BitList.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/BitList.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-BitList.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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-ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/HistogramSet.cpp -o libmaus2/util/la-HistogramSet.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/IncreasingList.cpp -o libmaus2/util/la-IncreasingList.o >/dev/null 2>&1 In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from libmaus2/util/IntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not 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'libmaus2/util/GenericIntervalTree.cpp' || echo './'`libmaus2/util/GenericIntervalTree.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-GenericIntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/GenericIntervalTree.hpp:23, from libmaus2/util/GenericIntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-LookupIntervalTree.lo `test -f 'libmaus2/util/LookupIntervalTree.cpp' || echo './'`libmaus2/util/LookupIntervalTree.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LookupIntervalTree.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LookupIntervalTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/LookupIntervalTree.hpp:22, from libmaus2/util/LookupIntervalTree.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/GenericIntervalTree.cpp -o libmaus2/util/la-GenericIntervalTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX 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libmaus2/bambam/la-BamIndexBinChunk.lo `test -f 'libmaus2/bambam/BamIndexBinChunk.cpp' || echo './'`libmaus2/bambam/BamIndexBinChunk.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamDefaultAdapters.cpp -o libmaus2/bambam/la-BamDefaultAdapters.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c 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libmaus2/bambam/la-BamIndexLinearChunk.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-HuffmanTree.lo `test -f 'libmaus2/huffman/HuffmanTree.cpp' || echo './'`libmaus2/huffman/HuffmanTree.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-HuffmanTree.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamRange.hpp:22, from libmaus2/bambam/BamRange.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignmentDecoderInfo.lo `test -f 'libmaus2/bambam/BamAlignmentDecoderInfo.cpp' || echo './'`libmaus2/bambam/BamAlignmentDecoderInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from libmaus2/huffman/HuffmanTree.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/HuffmanTree.cpp -o libmaus2/huffman/la-HuffmanTree.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignmentDecoderInfo.cpp -o libmaus2/bambam/la-BamAlignmentDecoderInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-Lz4Base.lo `test -f 'libmaus2/lz/Lz4Base.cpp' || echo './'`libmaus2/lz/Lz4Base.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/Lz4Base.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-Lz4Base.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 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-DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexInterval.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/BidirectionalIndexInterval.cpp -o libmaus2/fm/la-BidirectionalIndexInterval.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time 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-DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastALineParserLineInfo.cpp -o libmaus2/fastx/la-FastALineParserLineInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastABgzfIndexEntry.lo `test -f 'libmaus2/fastx/FastABgzfIndexEntry.cpp' || echo './'`libmaus2/fastx/FastABgzfIndexEntry.cpp libtool: compile: 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riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndex.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastABgzfIndex.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAMatchTable.cpp -o libmaus2/fastx/la-FastAMatchTable.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastAIndexEntry.lo `test -f 'libmaus2/fastx/FastAIndexEntry.cpp' || echo './'`libmaus2/fastx/FastAIndexEntry.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAIndexEntry.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAIndexEntry.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndexEntry.cpp -o libmaus2/fastx/la-FastABgzfIndexEntry.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastABgzfIndex.cpp -o libmaus2/fastx/la-FastABgzfIndex.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAIndexEntry.cpp -o libmaus2/fastx/la-FastAIndexEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastAIndex.lo `test -f 'libmaus2/fastx/FastAIndex.cpp' || echo './'`libmaus2/fastx/FastAIndex.cpp /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-LocalBaseConstants.lo `test -f 'libmaus2/lcs/LocalBaseConstants.cpp' || echo './'`libmaus2/lcs/LocalBaseConstants.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAIndex.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAIndex.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/LocalBaseConstants.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-LocalBaseConstants.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/LocalBaseConstants.cpp -o libmaus2/lcs/la-LocalBaseConstants.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-LocalEditDistanceResult.lo `test -f 'libmaus2/lcs/LocalEditDistanceResult.cpp' || echo './'`libmaus2/lcs/LocalEditDistanceResult.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/LocalEditDistanceResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamHeaderParserStateBase.lo `test -f 'libmaus2/bambam/BamHeaderParserStateBase.cpp' || echo './'`libmaus2/bambam/BamHeaderParserStateBase.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamHeaderParserStateBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-GeneFlatFile.lo `test -f 'libmaus2/bambam/GeneFlatFile.cpp' || echo './'`libmaus2/bambam/GeneFlatFile.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFile.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/LocalEditDistanceResult.cpp -o libmaus2/lcs/la-LocalEditDistanceResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-GeneFlatFileEntry.lo `test -f 'libmaus2/bambam/GeneFlatFileEntry.cpp' || echo './'`libmaus2/bambam/GeneFlatFileEntry.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFileEntry.cpp -o libmaus2/bambam/la-GeneFlatFileEntry.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAIndex.cpp -o libmaus2/fastx/la-FastAIndex.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo `test -f 'libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp' || echo './'`libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:22, from libmaus2/bambam/BamStreamingMarkDuplicatesSupport.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/GeneFlatFile.cpp -o libmaus2/bambam/la-GeneFlatFile.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-SamInfoBase.lo `test -f 'libmaus2/bambam/SamInfoBase.cpp' || echo './'`libmaus2/bambam/SamInfoBase.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamHeaderParserStateBase.cpp -o libmaus2/bambam/la-BamHeaderParserStateBase.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-SamInfoBase.o In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/SamInfoBase.cpp -o libmaus2/bambam/la-SamInfoBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-SHA1.lo `test -f 'libmaus2/digest/SHA1.cpp' || echo 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-Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/CRC32C.cpp -o libmaus2/digest/la-CRC32C.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-RefIdInterval.lo `test -f 'libmaus2/bambam/parallel/RefIdInterval.cpp' || echo './'`libmaus2/bambam/parallel/RefIdInterval.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathToken.lo `test -f 'libmaus2/fastx/RefPathToken.cpp' || echo './'`libmaus2/fastx/RefPathToken.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathToken.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/RefIdInterval.cpp -o libmaus2/bambam/parallel/la-RefIdInterval.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathToken.cpp -o libmaus2/fastx/la-RefPathToken.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-RefPathTokenVector.lo `test -f 'libmaus2/fastx/RefPathTokenVector.cpp' || echo './'`libmaus2/fastx/RefPathTokenVector.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-RefPathTokenVector.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-AlignmentStatistics.lo `test -f 'libmaus2/lcs/AlignmentStatistics.cpp' || echo './'`libmaus2/lcs/AlignmentStatistics.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignmentStatistics.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-SingleWordDNABitBuffer.lo `test -f 'libmaus2/fastx/SingleWordDNABitBuffer.cpp' || echo './'`libmaus2/fastx/SingleWordDNABitBuffer.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo `test -f 'libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp' || echo './'`libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/RefPathTokenVector.cpp -o libmaus2/fastx/la-RefPathTokenVector.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-AlignerFactory.lo `test -f 'libmaus2/lcs/AlignerFactory.cpp' || echo './'`libmaus2/lcs/AlignerFactory.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-AlignerFactory.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentStatistics.cpp -o libmaus2/lcs/la-AlignmentStatistics.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/SingleWordDNABitBuffer.cpp -o libmaus2/fastx/la-SingleWordDNABitBuffer.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/LongestIncreasingSubsequenceExtendedResult.cpp -o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o >/dev/null 2>&1 In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/AlignerFactory.hpp:21, from libmaus2/lcs/AlignerFactory.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-BandedAlignerFactory.lo `test -f 'libmaus2/lcs/BandedAlignerFactory.cpp' || echo './'`libmaus2/lcs/BandedAlignerFactory.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-BandedAlignerFactory.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TraceBlock.lo `test -f 'libmaus2/dazzler/align/TraceBlock.cpp' || echo './'`libmaus2/dazzler/align/TraceBlock.cpp /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-ApproximateRun.lo `test -f 'libmaus2/dazzler/align/ApproximateRun.cpp' || echo './'`libmaus2/dazzler/align/ApproximateRun.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TraceBlock.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TraceBlock.cpp -o libmaus2/dazzler/align/la-TraceBlock.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/ApproximateRun.cpp -o libmaus2/dazzler/align/la-ApproximateRun.o >/dev/null 2>&1 In file included from ./libmaus2/lcs/BandedAligner.hpp:21, from ./libmaus2/lcs/BandedAlignerFactory.hpp:21, from libmaus2/lcs/BandedAlignerFactory.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo `test -f 'libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp' || echo './'`libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapMeta.lo `test -f 'libmaus2/dazzler/align/OverlapMeta.cpp' || echo './'`libmaus2/dazzler/align/OverlapMeta.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapMeta.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignerFactory.cpp -o libmaus2/lcs/la-AlignerFactory.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/BandedAlignerFactory.cpp -o libmaus2/lcs/la-BandedAlignerFactory.o >/dev/null 2>&1 In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23, from libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from libmaus2/dazzler/align/OverlapMeta.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapMeta.cpp -o libmaus2/dazzler/align/la-OverlapMeta.o >/dev/null 2>&1 In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:30: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Tandem.lo `test -f 'libmaus2/dazzler/align/Tandem.cpp' || echo './'`libmaus2/dazzler/align/Tandem.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Tandem.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TandemVector.lo `test -f 'libmaus2/dazzler/align/TandemVector.cpp' || echo './'`libmaus2/dazzler/align/TandemVector.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TandemVector.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-GmpInteger.lo `test -f 'libmaus2/math/GmpInteger.cpp' || echo './'`libmaus2/math/GmpInteger.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpInteger.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from libmaus2/dazzler/align/Tandem.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from ./libmaus2/dazzler/align/TandemVector.hpp:21, from libmaus2/dazzler/align/TandemVector.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Tandem.cpp -o libmaus2/dazzler/align/la-Tandem.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpInteger.cpp -o libmaus2/math/la-GmpInteger.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TandemVector.cpp -o libmaus2/dazzler/align/la-TandemVector.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/BwtMergeBlockSortRequest.cpp -o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-GmpFloat.lo `test -f 'libmaus2/math/GmpFloat.cpp' || echo './'`libmaus2/math/GmpFloat.cpp /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-TracePoint.lo `test -f 'libmaus2/dazzler/align/TracePoint.cpp' || echo './'`libmaus2/dazzler/align/TracePoint.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/GmpFloat.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-GmpFloat.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/TracePoint.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-TracePoint.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall 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-fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankBiDirRange.cpp -o libmaus2/rank/la-DNARankBiDirRange.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceElement.lo `test -f 'libmaus2/lcs/NNPTraceElement.cpp' || echo './'`libmaus2/lcs/NNPTraceElement.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceElement.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.cpp -o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceElement.cpp -o libmaus2/lcs/la-NNPTraceElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPTraceContainer.lo `test -f 'libmaus2/lcs/NNPTraceContainer.cpp' || echo './'`libmaus2/lcs/NNPTraceContainer.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPTraceContainer.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-NNPAlignResult.lo `test -f 'libmaus2/lcs/NNPAlignResult.cpp' || echo './'`libmaus2/lcs/NNPAlignResult.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-NNPAlignResult.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-FastAToCompact4BigBand.lo `test -f 'libmaus2/fastx/FastAToCompact4BigBand.cpp' || echo './'`libmaus2/fastx/FastAToCompact4BigBand.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o In file included from ./libmaus2/lcs/NNPTraceContainer.hpp:23, from libmaus2/lcs/NNPTraceContainer.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPAlignResult.cpp -o libmaus2/lcs/la-NNPAlignResult.o >/dev/null 2>&1 In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from libmaus2/fastx/FastAToCompact4BigBand.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/NNPTraceContainer.cpp -o libmaus2/lcs/la-NNPTraceContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-ZlibInterface.lo `test -f 'libmaus2/lz/ZlibInterface.cpp' || echo './'`libmaus2/lz/ZlibInterface.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-ZlibInterface.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/ZlibInterface.cpp -o libmaus2/lz/la-ZlibInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-FileRemoval.lo `test -f 'libmaus2/aio/FileRemoval.cpp' || echo './'`libmaus2/aio/FileRemoval.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-FileRemoval.o In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp:25: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:19: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp:136:60: required from here 136 | libmaus2::wavelet::RlToHwtBase::rlToHwt(bwtfn, outhwt, tmpfilenamebase+"_finalhwttmp",numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtSelectSSA::computeSSA(std::vector >, const std::string&, const std::string&, const std::string&, const std::vector >&, std::string, bool, uint64_t, uint64_t, uint64_t, uint64_t, std::ostream*)’: libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:639:26: warning: variable ‘bc’ set but not used [-Wunused-but-set-variable=] 639 | uint64_t bc = 0; | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/FileRemoval.cpp -o libmaus2/aio/la-FileRemoval.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/FastAToCompact4BigBand.cpp -o libmaus2/fastx/la-FastAToCompact4BigBand.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-DNARankMEM.lo `test -f 'libmaus2/rank/DNARankMEM.cpp' || echo './'`libmaus2/rank/DNARankMEM.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-DNARankMEM.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/DNARankMEM.cpp -o libmaus2/rank/la-DNARankMEM.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainAddQueueElement.lo `test -f 'libmaus2/lcs/ChainAddQueueElement.cpp' || echo './'`libmaus2/lcs/ChainAddQueueElement.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainAddQueueElement.cpp -o libmaus2/lcs/la-ChainAddQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-Chain.lo `test -f 'libmaus2/lcs/Chain.cpp' || echo './'`libmaus2/lcs/Chain.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-Chain.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/Chain.cpp -o libmaus2/lcs/la-Chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNode.lo `test -f 'libmaus2/lcs/ChainNode.cpp' || echo './'`libmaus2/lcs/ChainNode.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNode.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNode.cpp -o libmaus2/lcs/la-ChainNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainNodeInfo.lo `test -f 'libmaus2/lcs/ChainNodeInfo.cpp' || echo './'`libmaus2/lcs/ChainNodeInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainNodeInfo.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainRemoveQueueElement.lo `test -f 'libmaus2/lcs/ChainRemoveQueueElement.cpp' || echo './'`libmaus2/lcs/ChainRemoveQueueElement.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainNodeInfo.cpp -o libmaus2/lcs/la-ChainNodeInfo.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainRemoveQueueElement.cpp -o libmaus2/lcs/la-ChainRemoveQueueElement.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-ChainSplayTreeNode.lo `test -f 'libmaus2/lcs/ChainSplayTreeNode.cpp' || echo './'`libmaus2/lcs/ChainSplayTreeNode.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdOutputStreamFactory.lo `test -f 'libmaus2/aio/PosixFdOutputStreamFactory.cpp' || echo './'`libmaus2/aio/PosixFdOutputStreamFactory.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/ChainSplayTreeNode.cpp -o libmaus2/lcs/la-ChainSplayTreeNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapHeader.lo `test -f 'libmaus2/dazzler/align/OverlapHeader.cpp' || echo './'`libmaus2/dazzler/align/OverlapHeader.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapHeader.cpp -o libmaus2/dazzler/align/la-OverlapHeader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-BamAlignment.lo `test -f 'libmaus2/bambam/BamAlignment.cpp' || echo './'`libmaus2/bambam/BamAlignment.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-BamAlignment.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdOutputStreamFactory.cpp -o libmaus2/aio/la-PosixFdOutputStreamFactory.o >/dev/null 2>&1 In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from libmaus2/bambam/BamAlignment.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtSelectSSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o >/dev/null 2>&1 In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libmaus2/bambam/BamAlignment.cpp: In member function ‘std::string libmaus2::bambam::BamAlignment::getReferenceRegionViaMd() const’: libmaus2/bambam/BamAlignment.cpp:98:17: warning: variable ‘refpos’ set but not used [-Wunused-but-set-variable=] 98 | int64_t refpos = 0; | ^~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp:21, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:18: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp:22, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/BamAlignment.cpp -o libmaus2/bambam/la-BamAlignment.o >/dev/null 2>&1 In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-InputOutputStreamInstance.lo `test -f 'libmaus2/aio/InputOutputStreamInstance.cpp' || echo './'`libmaus2/aio/InputOutputStreamInstance.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputOutputStreamInstance.cpp -o libmaus2/aio/la-InputOutputStreamInstance.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapInfo.lo `test -f 'libmaus2/dazzler/align/OverlapInfo.cpp' || echo './'`libmaus2/dazzler/align/OverlapInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapInfo.cpp -o libmaus2/dazzler/align/la-OverlapInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-OverlapDataInterface.lo `test -f 'libmaus2/dazzler/align/OverlapDataInterface.cpp' || echo './'`libmaus2/dazzler/align/OverlapDataInterface.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapData.hpp:23, from ./libmaus2/dazzler/align/OverlapDataInterface.hpp:21, from libmaus2/dazzler/align/OverlapDataInterface.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/OverlapDataInterface.cpp -o libmaus2/dazzler/align/la-OverlapDataInterface.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-PathTools.lo `test -f 'libmaus2/util/PathTools.cpp' || echo './'`libmaus2/util/PathTools.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/PathTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-PathTools.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OFStreamOutputStreamFactory.lo `test -f 'libmaus2/aio/OFStreamOutputStreamFactory.cpp' || echo './'`libmaus2/aio/OFStreamOutputStreamFactory.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/PathTools.cpp -o libmaus2/util/la-PathTools.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OFStreamOutputStreamFactory.cpp -o libmaus2/aio/la-OFStreamOutputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-PosixFdInput.lo `test -f 'libmaus2/aio/PosixFdInput.cpp' || echo './'`libmaus2/aio/PosixFdInput.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdInput.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-PosixFdInput.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo `test -f 'libmaus2/lz/BgzfDeflateHeaderFunctions.cpp' || echo './'`libmaus2/lz/BgzfDeflateHeaderFunctions.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateHeaderFunctions.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/PosixFdInput.cpp -o libmaus2/aio/la-PosixFdInput.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateHeaderFunctions.cpp -o libmaus2/lz/la-BgzfDeflateHeaderFunctions.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-BgzfDeflateZStreamBase.lo `test -f 'libmaus2/lz/BgzfDeflateZStreamBase.cpp' || echo './'`libmaus2/lz/BgzfDeflateZStreamBase.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateZStreamBase.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ChecksumsFactory.lo `test -f 'libmaus2/bambam/ChecksumsFactory.cpp' || echo './'`libmaus2/bambam/ChecksumsFactory.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ChecksumsFactory.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/BgzfDeflateZStreamBase.cpp -o libmaus2/lz/la-BgzfDeflateZStreamBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-SecrecyInputStreamFactory.lo `test -f 'libmaus2/aio/SecrecyInputStreamFactory.cpp' || echo './'`libmaus2/aio/SecrecyInputStreamFactory.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyInputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ChecksumsInterface.hpp:22, from ./libmaus2/bambam/ChecksumsFactory.hpp:22, from libmaus2/bambam/ChecksumsFactory.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-SecrecyOutputStreamFactory.lo `test -f 'libmaus2/aio/SecrecyOutputStreamFactory.cpp' || echo './'`libmaus2/aio/SecrecyOutputStreamFactory.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyInputStreamFactory.cpp -o libmaus2/aio/la-SecrecyInputStreamFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile riscv64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-Scram.lo `test -f 'libmaus2/bambam/Scram.c' || echo './'`libmaus2/bambam/Scram.c libtool: compile: riscv64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -fPIC -DPIC -o libmaus2/bambam/.libs/la-Scram.o libtool: compile: riscv64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/Scram.c -o libmaus2/bambam/la-Scram.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ScramCramEncoding.lo `test -f 'libmaus2/bambam/parallel/ScramCramEncoding.cpp' || echo './'`libmaus2/bambam/parallel/ScramCramEncoding.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ScramCramEncoding.cpp -o libmaus2/bambam/parallel/la-ScramCramEncoding.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/SecrecyOutputStreamFactory.cpp -o libmaus2/aio/la-SecrecyOutputStreamFactory.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp:19: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/huffman/GapDecoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:25, from ./libmaus2/suffixsort/GapArrayByte.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ChecksumsFactory.cpp -o libmaus2/bambam/la-ChecksumsFactory.o >/dev/null 2>&1 ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz432.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac32.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf832.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<32> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte64.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz464.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::ByteInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Lz4InputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Lz4InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac32.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf832.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateByte64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateLz464.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm64.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacTermInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacTermInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::CompactInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::CompactInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac64.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf864.o In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::PacInputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::PacInputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::Utf8InputTypes<64>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp:22:47: required from here 22 | template struct libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate< libmaus2::suffixsort::Utf8InputTypes<64> >; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePacTerm64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateCompact64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplatePac64.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplateUtf864.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeComputeSampledSA.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants128.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o >/dev/null 2>&1 In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_8.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentX128_16.cpp -o libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentConstants256.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o >/dev/null 2>&1 In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo `test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo `test -f 'libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp' || echo './'`libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp -o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo `test -f 'libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp' || echo './'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NP.hpp:21, from ./libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp:23, from libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o >/dev/null 2>&1 riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolRead-testThreadPoolRead.o `test -f 'test/testThreadPoolRead.cpp' || echo './'`test/testThreadPoolRead.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o `test -f 'test/testThreadPoolBgzfRead.cpp' || echo './'`test/testThreadPoolBgzfRead.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.cpp -o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.o >/dev/null 2>&1 riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o `test -f 'test/testThreadPoolBgzfDecompress.cpp' || echo './'`test/testThreadPoolBgzfDecompress.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBamParse-testThreadPoolBamParse.o `test -f 'test/testThreadPoolBamParse.cpp' || echo './'`test/testThreadPoolBamParse.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolBamAccumulate-testThreadPoolBamAccumulate.o `test -f 'test/testThreadPoolBamAccumulate.cpp' || echo './'`test/testThreadPoolBamAccumulate.cpp In file included from ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp:22, from test/testThreadPoolBamAccumulate.cpp:18: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp: In member function ‘virtual void libmaus2::parallel::threadpool::bam::ThreadPoolBamParseAccumulateHandler::sortFinished(libmaus2::util::shared_ptr, libmaus2::util::shared_ptr)’: ./libmaus2/parallel/threadpool/bam/ThreadPoolBamParseAccumulateHandler.hpp:1331:99: warning: unused variable ‘final’ [-Wunused-variable] 1331 | libmaus2::util::AtomicArray const & final = ptr->getFinal(); | ^~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPoolCramEncode-testThreadPoolCramEncode.o `test -f 'test/testThreadPoolCramEncode.cpp' || echo './'`test/testThreadPoolCramEncode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testThreadPoolCramEncode.cpp:25: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testAIO-testAIO.o `test -f 'test/testAIO.cpp' || echo './'`test/testAIO.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbitbtree-testbitbtree.o `test -f 'test/testbitbtree.cpp' || echo './'`test/testbitbtree.cpp In file included from test/testbitbtree.cpp:20: ./libmaus2/bitbtree/bitbtree.hpp: In member function ‘libmaus2::bitbtree::BitBTree::InsertInfo libmaus2::bitbtree::BitBTree::insertBit(uint64_t, uint64_t, bool, uint64_t) [with unsigned int k = 1; unsigned int w = 1]’: ./libmaus2/bitbtree/bitbtree.hpp:1485:123: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1485 | uint64_t const right_ptr = innernode->data[right_index].ptr; | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ ./libmaus2/bitbtree/bitbtree.hpp:1491:123: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1491 | uint64_t const right_cnt = innernode->data[right_index].cnt; | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ ./libmaus2/bitbtree/bitbtree.hpp:1550:112: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1550 | innernode->data[right_index].cnt = new_right_cnt; | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ ./libmaus2/bitbtree/bitbtree.hpp:1551:112: warning: array subscript 2 is above array bounds of ‘libmaus2::bitbtree::BitBTreeInnerNode::data_type [2]’ {aka ‘libmaus2::bitbtree::BitBTreeInnerNodeData [2]’} [-Warray-bounds=] 1551 | innernode->data[right_index].bcnt = right_leaf->data.rank1(new_right_cnt-1); | ~~~~~~~~~~~~~~~^ ./libmaus2/bitbtree/bitbtree.hpp:77:35: note: while referencing ‘libmaus2::bitbtree::BitBTreeInnerNode::data’ 77 | data_type data[2*k]; | ^~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBitIO-testBitIO.o `test -f 'test/testBitIO.cpp' || echo './'`test/testBitIO.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from test/testBitIO.cpp:30: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbtree-testbtree.o `test -f 'test/testbtree.cpp' || echo './'`test/testbtree.cpp In file included from test/testBitIO.cpp:27: In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:722:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:369:50: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long unsigned int [1]’} [-Warray-bounds=] 369 | uint64_t t = *DD; | ^ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:722:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:372:45: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long unsigned int [1]’} [-Warray-bounds=] 372 | *DD = t; | ~~~~^~~ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:723:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:369:50: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long unsigned int [1]’} [-Warray-bounds=] 369 | uint64_t t = *DD; | ^ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ In member function ‘void libmaus2::bitio::CompactOffsetOneArray::putBits(uint64_t, uint64_t)’, inlined from ‘void libmaus2::bitio::CompactOffsetOneArray::set(uint64_t, uint64_t)’ at ./libmaus2/bitio/CompactOffsetOneArray.hpp:59:46, inlined from ‘int main()’ at test/testBitIO.cpp:723:8: ./libmaus2/bitio/CompactOffsetOneArray.hpp:372:45: warning: array subscript 1 is outside array bounds of ‘uint64_t [1]’ {aka ‘long unsigned int [1]’} [-Warray-bounds=] 372 | *DD = t; | ~~~~^~~ test/testBitIO.cpp: In function ‘int main()’: test/testBitIO.cpp:719:26: note: at offset 8 into object ‘v’ of size 8 719 | uint64_t v = -1; | ^ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBWTDyn-testBWTDyn.o `test -f 'test/testBWTDyn.cpp' || echo './'`test/testBWTDyn.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testBWTDyn.cpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 4]’: test/testBWTDyn.cpp:103:52: required from here 103 | ::libmaus2::huffman::EncodeTable<4> enctable(hnode); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBWTHufDyn-testBWTHufDyn.o `test -f 'test/testBWTHufDyn.cpp' || echo './'`test/testBWTHufDyn.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/wavelet/DynamicHuffmanWaveletTree.hpp:24, from test/testBWTHufDyn.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/HuffmanWaveletTree.hpp:406:49: required from here 406 | : n(rn), aroot(raroot), root(aroot.get()), enctable(root), acode(racode), code(acode.get()), | ^~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 4]’: test/testBWTHufDyn.cpp:120:52: required from here 120 | ::libmaus2::huffman::EncodeTable<4> enctable(hnode); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testDivSufSort-testDivSufSort.o `test -f 'test/testDivSufSort.cpp' || echo './'`test/testDivSufSort.cpp In file included from ./libmaus2/lf/LF.hpp:24, from ./libmaus2/fm/SampledSA.hpp:23, from ./libmaus2/lcp/LCP.hpp:27, from test/testDivSufSort.cpp:26: ./libmaus2/wavelet/WaveletTree.hpp: In instantiation of ‘std::pair<_symbol_type, long unsigned int> libmaus2::wavelet::WaveletTree<_rank_type, _symbol_type>::inverseSelect(uint64_t) const [with _rank_type = libmaus2::rank::ERank222BTemplate; _symbol_type = long unsigned int; uint64_t = long unsigned int]’: ./libmaus2/lf/LFBase.hpp:166:83: required from ‘uint64_t libmaus2::lf::LFBase<_wt_type>::operator()(uint64_t) const [with _wt_type = libmaus2::wavelet::WaveletTree, long unsigned int>; uint64_t = long unsigned int]’ 166 | std::pair< typename wt_type::symbol_type,uint64_t> const is = W->inverseSelect(r); | ~~~~~~~~~~~~~~~~^~~ ./libmaus2/fm/SampledSA.hpp:322:15: required from ‘libmaus2::fm::SimpleSampledSA::SimpleSampledSA(const lf_type*, uint64_t, bool) [with lf_type = libmaus2::lf::LF; uint64_t = long unsigned int]’ 322 | r = (*lf)(r); // LF mapping | ~~~~~^~~ test/testDivSufSort.cpp:71:67: required from here 71 | ::libmaus2::fm::SimpleSampledSA< ::libmaus2::lf::LF > SSA(&LF,2); | ^ ./libmaus2/wavelet/WaveletTree.hpp:1333:75: warning: variable ‘m’ set but not used [-Wunused-but-set-variable=] 1333 | uint64_t left = 0, right = n, offset = 0, m = (1ull<<(b-1)); | ^ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testDNABitWords-testDNABitWords.o `test -f 'test/testDNABitWords.cpp' || echo './'`test/testDNABitWords.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testFastRead-testFastRead.o `test -f 'test/testFastRead.cpp' || echo './'`test/testFastRead.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testFastRead.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testHuffman-testHuffman.o `test -f 'test/testHuffman.cpp' || echo './'`test/testHuffman.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from test/testHuffman.cpp:27: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testHuffman.cpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/HuffmanWaveletTree.hpp:406:49: required from here 406 | : n(rn), aroot(raroot), root(aroot.get()), enctable(root), acode(racode), code(acode.get()), | ^~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testIsa-testIsa.o `test -f 'test/testIsa.cpp' || echo './'`test/testIsa.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testkmp-testkmp.o `test -f 'test/testkmp.cpp' || echo './'`test/testkmp.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlz-testlz.o `test -f 'test/testlz.cpp' || echo './'`test/testlz.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testRank-testRank.o `test -f 'test/testRank.cpp' || echo './'`test/testRank.cpp In file included from test/testRank.cpp:35: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testToWaveletTreeBits-testToWaveletTreeBits.o `test -f 'test/testToWaveletTreeBits.cpp' || echo './'`test/testToWaveletTreeBits.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testWaveletExternal-testWaveletExternal.o `test -f 'test/testWaveletExternal.cpp' || echo './'`test/testWaveletExternal.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpExternalWaveletGeneratorCompactHuffman.hpp:33, from test/testWaveletExternal.cpp:28: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/wavelet/ExternalWaveletGenerator.hpp:34, from test/testWaveletExternal.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188, from test/testWaveletExternal.cpp:101: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testTrie-testTrie.o `test -f 'test/testTrie.cpp' || echo './'`test/testTrie.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbandedlcs-testbandedlcs.o `test -f 'test/testbandedlcs.cpp' || echo './'`test/testbandedlcs.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamwriter-testbamwriter.o `test -f 'test/testbamwriter.cpp' || echo './'`test/testbamwriter.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testbandedlcs.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testbamwriter.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamwriter.cpp:22: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testarraydecode-testarraydecode.o `test -f 'test/testarraydecode.cpp' || echo './'`test/testarraydecode.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsnappy-testsnappy.o `test -f 'test/testsnappy.cpp' || echo './'`test/testsnappy.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsnappyconcat-testsnappyconcat.o `test -f 'test/testsnappyconcat.cpp' || echo './'`test/testsnappyconcat.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgunzip-testgunzip.o `test -f 'test/testgunzip.cpp' || echo './'`test/testgunzip.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testhashcollisions-testhashcollisions.o `test -f 'test/testhashcollisions.cpp' || echo './'`test/testhashcollisions.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplebloomcollisions-testsimplebloomcollisions.o `test -f 'test/testsimplebloomcollisions.cpp' || echo './'`test/testsimplebloomcollisions.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplehash-testsimplehash.o `test -f 'test/testsimplehash.cpp' || echo './'`test/testsimplehash.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/SimpleBloomFilter.hpp:25, from test/testsimplebloomcollisions.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplecountinghash-testsimplecountinghash.o `test -f 'test/testsimplecountinghash.cpp' || echo './'`test/testsimplecountinghash.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcachealignedalloc-testcachealignedalloc.o `test -f 'test/testcachealignedalloc.cpp' || echo './'`test/testcachealignedalloc.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsyncfastreaderbase-testsyncfastreaderbase.o `test -f 'test/testsyncfastreaderbase.cpp' || echo './'`test/testsyncfastreaderbase.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdl-testdl.o `test -f 'test/testdl.cpp' || echo './'`test/testdl.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdifenc-testdifenc.o `test -f 'test/testdifenc.cpp' || echo './'`test/testdifenc.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbwtmergeinternal-testbwtmergeinternal.o `test -f 'test/testbwtmergeinternal.cpp' || echo './'`test/testbwtmergeinternal.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastarewrite-testfastarewrite.o `test -f 'test/testfastarewrite.cpp' || echo './'`test/testfastarewrite.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testfastarewrite.cpp:6: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastarecode-testfastarecode.o `test -f 'test/testfastarecode.cpp' || echo './'`test/testfastarecode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testfastarecode.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamtofastq-testbamtofastq.o `test -f 'test/testbamtofastq.cpp' || echo './'`test/testbamtofastq.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbamtofastq.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamrange-testbamrange.o `test -f 'test/testbamrange.cpp' || echo './'`test/testbamrange.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamrange.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamdamage-testbamdamage.o `test -f 'test/testbamdamage.cpp' || echo './'`test/testbamdamage.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdamage.cpp:3: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgamma-testgamma.o `test -f 'test/testgamma.cpp' || echo './'`test/testgamma.cpp test/testbamdamage.cpp: In function ‘int main()’: test/testbamdamage.cpp:19:26: warning: variable ‘total’ set but not used [-Wunused-but-set-variable=] 19 | uint64_t total = 0; | ^~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/util/GenericIntervalTree.hpp:23, from ./libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp:24, from ./libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp:22, from ./libmaus2/gamma/SparseGammaGapConcatDecoder.hpp:22, from ./libmaus2/gamma/SparseGammaGapMerge.hpp:24, from test/testgamma.cpp:42: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from test/testgamma.cpp:1899: ./libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp: In member function ‘void libmaus2::gamma::GammaFlaggedIntervalEncoder::flushInternal()’: ./libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp:76:50: warning: variable ‘vsum’ set but not used [-Wunused-but-set-variable=] 76 | uint64_t vsum = pa[0].to-pa[0].from; | ^~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/gamma/GammaPartitionEncoder.hpp:26, from test/testgamma.cpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcompact-testcompact.o `test -f 'test/testcompact.cpp' || echo './'`test/testcompact.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbytetocompact-testbytetocompact.o `test -f 'test/testbytetocompact.cpp' || echo './'`test/testbytetocompact.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testscramtosam-testscramtosam.o `test -f 'test/testscramtosam.cpp' || echo './'`test/testscramtosam.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testpacdecode-testpacdecode.o `test -f 'test/testpacdecode.cpp' || echo './'`test/testpacdecode.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testutf8split-testutf8split.o `test -f 'test/testutf8split.cpp' || echo './'`test/testutf8split.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcirchash-testcirchash.o `test -f 'test/testcirchash.cpp' || echo './'`test/testcirchash.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from test/testutf8split.cpp:31: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testcirchash.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from test/testutf8split.cpp:27: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from test/testutf8split.cpp:35: ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpHuffmanWaveletTree::constructWaveletTree(const std::string&, const std::string&, libmaus2::huffman::HuffmanTreeNode::shared_ptr_type, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; libmaus2::huffman::HuffmanTreeNode::shared_ptr_type = std::shared_ptr; uint64_t = long unsigned int]’: test/testutf8split.cpp:211:79: required from here 211 | ::libmaus2::wavelet::Utf8ToImpHuffmanWaveletTree::constructWaveletTree(fn,fn+".hwt",::libmaus2::huffman::HuffmanTreeNode::shared_ptr_type(),numthreads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:310:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 310 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:315:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 315 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpHuffmanWaveletTree.hpp:195:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 195 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from test/testutf8split.cpp:205: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: test/testutf8split.cpp:224:86: required from here 224 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(fn,fn+".hwt",H,numthreads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:334:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 334 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:339:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 339 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:219:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 219 | uint64_t numsyms1 = 0; | ^~~~~~~~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testrmmtree-testrmmtree.o `test -f 'test/testrmmtree.cpp' || echo './'`test/testrmmtree.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcst-testcst.o `test -f 'test/testcst.cpp' || echo './'`test/testcst.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:22, from test/testcst.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from test/testrmmtree.cpp:25: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamcmp-testbamcmp.o `test -f 'test/testbamcmp.cpp' || echo './'`test/testbamcmp.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamcmp.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamdif-testbamdif.o `test -f 'test/testbamdif.cpp' || echo './'`test/testbamdif.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testqreorder-testqreorder.o `test -f 'test/testqreorder.cpp' || echo './'`test/testqreorder.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamdif.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfqbgzf-testfqbgzf.o `test -f 'test/testfqbgzf.cpp' || echo './'`test/testfqbgzf.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastQReader.hpp:27, from ./libmaus2/fastx/StreamFastQReader.hpp:23, from test/testfqbgzf.cpp:23: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from test/testfqbgzf.cpp:38: ./libmaus2/clustering/KMeans.hpp: In static member function ‘static double libmaus2::clustering::KMeans::silhouette(const std::vector&, const std::vector&)’: ./libmaus2/clustering/KMeans.hpp:596:50: warning: variable ‘clusters’ set but not used [-Wunused-but-set-variable=] 596 | double clusters = 0.0; | ^~~~~~~~ ./libmaus2/clustering/KMeans.hpp: In static member function ‘static double libmaus2::clustering::KMeans::silhouette(const std::vector >&, const std::vector >&)’: ./libmaus2/clustering/KMeans.hpp:672:50: warning: variable ‘clusters’ set but not used [-Wunused-but-set-variable=] 672 | double clusters = 0.0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcompactfastrandom-testcompactfastrandom.o `test -f 'test/testcompactfastrandom.cpp' || echo './'`test/testcompactfastrandom.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/aio/ReorderConcatGenericInput.hpp:24, from ./libmaus2/fastx/CompactFastDecoder.hpp:22, from test/testcompactfastrandom.cpp:1: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamindex-testbamindex.o `test -f 'test/testbamindex.cpp' || echo './'`test/testbamindex.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamrewrite-testbamrewrite.o `test -f 'test/testbamrewrite.cpp' || echo './'`test/testbamrewrite.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testbamindex.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastqstream-testfastqstream.o `test -f 'test/testfastqstream.cpp' || echo './'`test/testfastqstream.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamParallelRewrite.hpp:23, from test/testbamrewrite.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastQReader.hpp:27, from ./libmaus2/fastx/StreamFastQReader.hpp:23, from test/testfastqstream.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamindex.cpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsort-testsort.o `test -f 'test/testsort.cpp' || echo './'`test/testsort.cpp In file included from test/testsort.cpp:22: ./libmaus2/huffman/LFRankPosEncoder.hpp: In member function ‘void libmaus2::huffman::LFRankPosEncoder::flush()’: ./libmaus2/huffman/LFRankPosEncoder.hpp:455:50: warning: variable ‘nummeta’ set but not used [-Wunused-but-set-variable=] 455 | uint64_t nummeta = 0; | ^~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from test/testsort.cpp:605: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/LFSupportDecoder.hpp:33, from test/testsort.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testexternalsort-testexternalsort.o `test -f 'test/testexternalsort.cpp' || echo './'`test/testexternalsort.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testcollatespeed-testcollatespeed.o `test -f 'test/testcollatespeed.cpp' || echo './'`test/testcollatespeed.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testcollatespeed.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamheaderparser-testbamheaderparser.o `test -f 'test/testbamheaderparser.cpp' || echo './'`test/testbamheaderparser.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamRangeDecoder.hpp:22, from test/testbamheaderparser.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammergecoordinate-testbammergecoordinate.o `test -f 'test/testbammergecoordinate.cpp' || echo './'`test/testbammergecoordinate.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeCoordinate.hpp:22, from test/testbammergecoordinate.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamCatHeader.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammergecollate-testbammergecollate.o `test -f 'test/testbammergecollate.cpp' || echo './'`test/testbammergecollate.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentFilter.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:22, from test/testbammergecollate.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/CircularHashCollatingBamDecoder.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammergequeryname-testbammergequeryname.o `test -f 'test/testbammergequeryname.cpp' || echo './'`test/testbammergequeryname.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamMergeQueryName.hpp:22, from test/testbammergequeryname.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamCatHeader.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamcat-testbamcat.o `test -f 'test/testbamcat.cpp' || echo './'`test/testbamcat.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamCatHeader.hpp:22, from ./libmaus2/bambam/BamCat.hpp:22, from test/testbamcat.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamCatHeader.hpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testautoarray2d-testautoarray2d.o `test -f 'test/testautoarray2d.cpp' || echo './'`test/testautoarray2d.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testhist-testhist.o `test -f 'test/testhist.cpp' || echo './'`test/testhist.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastaparse-testfastaparse.o `test -f 'test/testfastaparse.cpp' || echo './'`test/testfastaparse.cpp In file included from test/testfastaparse.cpp:27: ./libmaus2/wavelet/DynamicWaveletTree.hpp: In instantiation of ‘void libmaus2::wavelet::DynamicWaveletTree<_k, _w>::remove(uint64_t) [with unsigned int _k = 8; unsigned int _w = 8; uint64_t = long unsigned int]’: test/testfastaparse.cpp:115:15: required from here 115 | D.remove(delpos); | ~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/DynamicWaveletTree.hpp:199:42: warning: variable ‘m’ set but not used [-Wunused-but-set-variable=] 199 | uint64_t m = (1ull << (b-1)); | ^ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testvalidatebamindex-testvalidatebamindex.o `test -f 'test/testvalidatebamindex.cpp' || echo './'`test/testvalidatebamindex.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testeditdistance-testeditdistance.o `test -f 'test/testeditdistance.cpp' || echo './'`test/testeditdistance.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamIndexGenerator.hpp:31, from test/testvalidatebamindex.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/lcs/EditDistanceTraceContainer.hpp:22, from ./libmaus2/lcs/EditDistance.hpp:24, from ./libmaus2/lcs/MetaEditDistance.hpp:22, from test/testeditdistance.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testvalidatebamindex.cpp:23: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplethreadpool-testsimplethreadpool.o `test -f 'test/testsimplethreadpool.cpp' || echo './'`test/testsimplethreadpool.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o `test -f 'test/testsimplethreadpoolbamdecode.cpp' || echo './'`test/testsimplethreadpoolbamdecode.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from test/testsimplethreadpoolbamdecode.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgaparraybyte-testgaparraybyte.o `test -f 'test/testgaparraybyte.cpp' || echo './'`test/testgaparraybyte.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testsimplethreadpoolbamdecode.cpp:21: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/huffman/GapDecoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:25, from ./libmaus2/suffixsort/GapArrayByte.hpp:25, from test/testgaparraybyte.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/GapArrayByte.hpp:29: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/GapEncoder.hpp:23: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testzlibconcat-testzlibconcat.o `test -f 'test/testzlibconcat.cpp' || echo './'`test/testzlibconcat.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimplecompressblock-testsimplecompressblock.o `test -f 'test/testsimplecompressblock.cpp' || echo './'`test/testsimplecompressblock.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfaindex-testfaindex.o `test -f 'test/testfaindex.cpp' || echo './'`test/testfaindex.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastablockrecode-testfastablockrecode.o `test -f 'test/testfastablockrecode.cpp' || echo './'`test/testfastablockrecode.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testrlhist-testrlhist.o `test -f 'test/testrlhist.cpp' || echo './'`test/testrlhist.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/fastx/FastaBPSequenceDecoder.hpp:25, from ./libmaus2/fastx/FastaBPDecoder.hpp:22, from test/testfastablockrecode.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from test/testrlhist.cpp:20: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnumcpus-testnumcpus.o `test -f 'test/testnumcpus.cpp' || echo './'`test/testnumcpus.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdiag-testdiag.o `test -f 'test/testdiag.cpp' || echo './'`test/testdiag.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlowmembamheaderparser-testlowmembamheaderparser.o `test -f 'test/testlowmembamheaderparser.cpp' || echo './'`test/testlowmembamheaderparser.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from test/testlowmembamheaderparser.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgeneflatfile-testgeneflatfile.o `test -f 'test/testgeneflatfile.cpp' || echo './'`test/testgeneflatfile.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testurlinputstream-testurlinputstream.o `test -f 'test/testurlinputstream.cpp' || echo './'`test/testurlinputstream.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsimpletrie-testsimpletrie.o `test -f 'test/testsimpletrie.cpp' || echo './'`test/testsimpletrie.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlru-testlru.o `test -f 'test/testlru.cpp' || echo './'`test/testlru.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbytecnt-testbytecnt.o `test -f 'test/testbytecnt.cpp' || echo './'`test/testbytecnt.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o `test -f 'test/teststronglyconnectedcomponents.cpp' || echo './'`test/teststronglyconnectedcomponents.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testtopologicalsorting-testtopologicalsorting.o `test -f 'test/testtopologicalsorting.cpp' || echo './'`test/testtopologicalsorting.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlinebuffer-testlinebuffer.o `test -f 'test/testlinebuffer.cpp' || echo './'`test/testlinebuffer.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsamdecoder-testsamdecoder.o `test -f 'test/testsamdecoder.cpp' || echo './'`test/testsamdecoder.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from ./libmaus2/bambam/BamBlockWriterBaseFactory.hpp:22, from test/testsamdecoder.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdecimalnumberparser-testdecimalnumberparser.o `test -f 'test/testdecimalnumberparser.cpp' || echo './'`test/testdecimalnumberparser.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/SamInfo.hpp:26, from ./libmaus2/bambam/SamDecoder.hpp:23, from test/testsamdecoder.cpp:22: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testunsignedinteger-testunsignedinteger.o `test -f 'test/testunsignedinteger.cpp' || echo './'`test/testunsignedinteger.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmd5-testmd5.o `test -f 'test/testmd5.cpp' || echo './'`test/testmd5.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsha-testsha.o `test -f 'test/testsha.cpp' || echo './'`test/testsha.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparallelbamvalidation-testparallelbamvalidation.o `test -f 'test/testparallelbamvalidation.cpp' || echo './'`test/testparallelbamvalidation.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamHeaderLowMem.hpp:25, from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamvalidation.cpp:40: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparallelbamrewrite-testparallelbamrewrite.o `test -f 'test/testparallelbamrewrite.cpp' || echo './'`test/testparallelbamrewrite.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/ParseInfo.hpp:24: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp:22, from test/testparallelbamrewrite.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbammateerase-testbammateerase.o `test -f 'test/testbammateerase.cpp' || echo './'`test/testbammateerase.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbammateerase.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/parallel/ParseInfo.hpp:22, from test/testparallelbamrewrite.cpp:54: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparallelbamblocksort-testparallelbamblocksort.o `test -f 'test/testparallelbamblocksort.cpp' || echo './'`test/testparallelbamblocksort.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamNumericalIndexGenerator.hpp:24, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:24, from test/testparallelbamblocksort.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp:23, from ./libmaus2/bambam/parallel/GenericInputSingleData.hpp:30, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp:22, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp:22, from ./libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp:22, from ./libmaus2/bambam/parallel/BlockMergeControl.hpp:36: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmapperm-testmapperm.o `test -f 'test/testmapperm.cpp' || echo './'`test/testmapperm.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignmentEncoderBase.hpp:22, from ./libmaus2/bambam/BamWriter.hpp:22, from test/testmapperm.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:31, from ./libmaus2/bambam/ReadEndsContainer.hpp:34, from ./libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp:22, from ./libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp:28, from ./libmaus2/bambam/parallel/BlockSortControl.hpp:37, from test/testparallelbamblocksort.cpp:20: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockIndexSet.hpp:107:34: required from here 107 | new index_decoder_type(str) | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testexternalmemoryindex-testexternalmemoryindex.o `test -f 'test/testexternalmemoryindex.cpp' || echo './'`test/testexternalmemoryindex.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseShortHashAttributeComparator; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseShortHashAttributeComparator; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:486:45: required from ‘static std::vector > > libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::getShortMergeIntervals(const std::vector&, uint64_t, bool) [with bool _proxy = true; uint64_t = long unsigned int]’ 486 | short_index_decoder_pointer_type tptr(new short_index_decoder_type(*Pindexstreams[i],cacheperdec)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1387:89: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::enqueMergeFragReadEndsLists(libmaus2::parallel::StdSemaphore::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; libmaus2::parallel::StdSemaphore::shared_ptr_type = std::shared_ptr]’ 1387 | libmaus2::bambam::ReadEndsBlockDecoderBaseCollection::getShortMergeIntervals(*MI,STP.getNumThreads(),false /* check */); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1891:6: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::mergeReadEndsLists(std::ostream&, std::string) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; std::ostream = std::basic_ostream; std::string = std::__cxx11::basic_string]’ 1891 | enqueMergeFragReadEndsLists(psem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:129:25: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const std::string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; bool create_dup_mark_info = false; std::string = std::__cxx11::basic_string]’ 129 | VC->mergeReadEndsLists(std::cerr /* metrics stream */,"testparallelbamblocksort"); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:257:38: required from here 254 | r = parallelbamblocksort< | ~~~~~~~~~~~~~~~~~~~~~ 255 | libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | false /* create dup mark info */>(arginfo,false /* fix mates */,false /* dup mark support */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 | "queryname", | ~~~~~~~~~~~~ 259 | false /* bam index */ | ~~~~~~~~~~~~~~~~~~~~~ 260 | ); | ~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseLongHashAttributeComparator; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = libmaus2::bambam::ReadEndsBaseLongHashAttributeComparator; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:926:44: required from ‘static std::vector > > libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::getLongMergeIntervals(const std::vector&, uint64_t, bool) [with bool _proxy = true; uint64_t = long unsigned int]’ 926 | long_index_decoder_pointer_type tptr(new long_index_decoder_type(*Pindexstreams[i],cacheperdec)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1452:88: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::enqueMergePairReadEndsLists(libmaus2::parallel::StdSemaphore::shared_ptr_type) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; libmaus2::parallel::StdSemaphore::shared_ptr_type = std::shared_ptr]’ 1452 | libmaus2::bambam::ReadEndsBlockDecoderBaseCollection::getLongMergeIntervals(*MI,STP.getNumThreads(),false /* check */); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/parallel/BlockSortControl.hpp:1903:6: required from ‘void libmaus2::bambam::parallel::BlockSortControl<_order_type, _create_dup_mark_info>::mergeReadEndsLists(std::ostream&, std::string) [with _order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; bool _create_dup_mark_info = false; std::ostream = std::basic_ostream; std::string = std::__cxx11::basic_string]’ 1903 | enqueMergePairReadEndsLists(psem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:129:25: required from ‘int parallelbamblocksort(const libmaus2::util::ArgInfo&, bool, bool, const std::string&, bool) [with order_type = libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator; heap_element_type = libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName; bool create_dup_mark_info = false; std::string = std::__cxx11::basic_string]’ 129 | VC->mergeReadEndsLists(std::cerr /* metrics stream */,"testparallelbamblocksort"); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testparallelbamblocksort.cpp:257:38: required from here 254 | r = parallelbamblocksort< | ~~~~~~~~~~~~~~~~~~~~~ 255 | libmaus2::bambam::parallel::FragmentAlignmentBufferQueryNameComparator, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | libmaus2::bambam::parallel::GenericInputControlMergeHeapEntryQueryName, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | false /* create dup mark info */>(arginfo,false /* fix mates */,false /* dup mark support */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 | "queryname", | ~~~~~~~~~~~~ 259 | false /* bam index */ | ~~~~~~~~~~~~~~~~~~~~~ 260 | ); | ~ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsBase.hpp:22, from test/testexternalmemoryindex.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from test/testexternalmemoryindex.cpp:20: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = SerialisableUint64; unsigned int _base_level_log = 10; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = SerialisableUint64; unsigned int _base_level_log = 10; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ test/testexternalmemoryindex.cpp:106:131: required from here 106 | libmaus2::index::ExternalMemoryIndexDecoder indexdec(indexiostr,(1ull << 20)); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastqtobam-testfastqtobam.o `test -f 'test/testfastqtobam.cpp' || echo './'`test/testfastqtobam.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp:28, from ./libmaus2/bambam/parallel/FastqToBamControl.hpp:22, from test/testfastqtobam.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsamrecoding-testsamrecoding.o `test -f 'test/testsamrecoding.cpp' || echo './'`test/testsamrecoding.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from ./libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp:22, from test/testsamrecoding.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdazzlerdb-testdazzlerdb.o `test -f 'test/testdazzlerdb.cpp' || echo './'`test/testdazzlerdb.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapMeta.hpp:21, from ./libmaus2/dazzler/align/Tandem.hpp:21, from ./libmaus2/dazzler/align/TandemVector.hpp:21, from ./libmaus2/dazzler/align/TandemVectorPartContainer.hpp:22, from test/testdazzlerdb.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp:21, from test/testdazzlerdb.cpp:19: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastashred-testfastashred.o `test -f 'test/testfastashred.cpp' || echo './'`test/testfastashred.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testfastashred.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testalignerspeed-testalignerspeed.o `test -f 'test/testalignerspeed.cpp' || echo './'`test/testalignerspeed.cpp In file included from ./libmaus2/lcs/NNPTraceContainer.hpp:23, from ./libmaus2/lcs/NNPCor.hpp:22, from test/testalignerspeed.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from ./libmaus2/random/DNABaseNoiseSpiker.hpp:22, from test/testalignerspeed.cpp:39: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastasingleline-testfastasingleline.o `test -f 'test/testfastasingleline.cpp' || echo './'`test/testfastasingleline.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testfastasingleline.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdazzleralignmentrewrite-testdazzleralignmentrewrite.o `test -f 'test/testdazzleralignmentrewrite.cpp' || echo './'`test/testdazzleralignmentrewrite.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/AlignmentFile.hpp:21, from test/testdazzleralignmentrewrite.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testxz-testxz.o `test -f 'test/testxz.cpp' || echo './'`test/testxz.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdazzlerindex-testdazzlerindex.o `test -f 'test/testdazzlerindex.cpp' || echo './'`test/testdazzlerindex.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/AlignmentFile.hpp:21, from ./libmaus2/dazzler/align/DalignerIndexDecoder.hpp:21, from ./libmaus2/dazzler/align/AlignmentFileDecoder.hpp:21, from ./libmaus2/dazzler/align/OverlapIndexer.hpp:21, from test/testdazzlerindex.cpp:19: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testargparser-testargparser.o `test -f 'test/testargparser.cpp' || echo './'`test/testargparser.cpp In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdnarank-testdnarank.o `test -f 'test/testdnarank.cpp' || echo './'`test/testdnarank.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlowbits-testlowbits.o `test -f 'test/testlowbits.cpp' || echo './'`test/testlowbits.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/rank/DNARank.hpp:35, from ./libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp:22, from test/testdnarank.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfastaexplode-testfastaexplode.o `test -f 'test/testfastaexplode.cpp' || echo './'`test/testfastaexplode.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/rank/DNARank.hpp:24: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testfastaexplode.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testfaextract-testfaextract.o `test -f 'test/testfaextract.cpp' || echo './'`test/testfaextract.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from test/testfaextract.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmurmur3-testmurmur3.o `test -f 'test/testmurmur3.cpp' || echo './'`test/testmurmur3.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testpairalign-testpairalign.o `test -f 'test/testpairalign.cpp' || echo './'`test/testpairalign.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/testpairalign.cpp:18: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NP.hpp:21, from test/testpairalign.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsplaytree-testsplaytree.o `test -f 'test/testsplaytree.cpp' || echo './'`test/testsplaytree.cpp In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21, from test/testpairalign.cpp:24: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbwtconstruction-testbwtconstruction.o `test -f 'test/testbwtconstruction.cpp' || echo './'`test/testbwtconstruction.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstruction.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbwtconstructionfasta-testbwtconstructionfasta.o `test -f 'test/testbwtconstructionfasta.cpp' || echo './'`test/testbwtconstructionfasta.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testbwtconstructionfasta.cpp:22: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testarrayinput-testarrayinput.o `test -f 'test/testarrayinput.cpp' || echo './'`test/testarrayinput.cpp In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testsymcnt-testsymcnt.o `test -f 'test/testsymcnt.cpp' || echo './'`test/testsymcnt.cpp In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/SymCountEncoder.hpp:26, from test/testsymcnt.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testgammapd-testgammapd.o `test -f 'test/testgammapd.cpp' || echo './'`test/testgammapd.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testdnasuffixtrav-testdnasuffixtrav.o `test -f 'test/testdnasuffixtrav.cpp' || echo './'`test/testdnasuffixtrav.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from test/testdnasuffixtrav.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testserialisedsorting-testserialisedsorting.o `test -f 'test/testserialisedsorting.cpp' || echo './'`test/testserialisedsorting.cpp In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamnumericalindex-testbamnumericalindex.o `test -f 'test/testbamnumericalindex.cpp' || echo './'`test/testbamnumericalindex.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamnumericalindex.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnpl-testnpl.o `test -f 'test/testnpl.cpp' || echo './'`test/testnpl.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NPNoTrace.hpp:21, from ./libmaus2/lcs/NPLinMem.hpp:21, from test/testnpl.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from test/testnpl.cpp:21: ./libmaus2/lcs/NNPCor.hpp: In instantiation of ‘libmaus2::lcs::NNPAlignResult libmaus2::lcs::NNPCor::alignLinMem(iterator, iterator, uint64_t, iterator, iterator, uint64_t, libmaus2::lcs::AlignmentTraceContainer&, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long unsigned int]’: test/testnpl.cpp:118:77: required from here 118 | libmaus2::lcs::NNPAlignResult nres = cor.alignLinMem(a.begin(),a.end(),0,b.begin(),b.end(),0,ATC); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NNPCor.hpp:1985:42: warning: variable ‘ed’ set but not used [-Wunused-but-set-variable=] 1985 | uint64_t ed = 0; | ^~ ./libmaus2/lcs/NNPCor.hpp: In instantiation of ‘libmaus2::lcs::NNPAlignResult libmaus2::lcs::NNPCor::alignLinMemForward(std::pair, iterator, iterator, iterator, iterator, libmaus2::lcs::AlignmentTraceContainer&, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long unsigned int]’: ./libmaus2/lcs/NNPCor.hpp:2219:40: required from ‘libmaus2::lcs::NNPAlignResult libmaus2::lcs::NNPCor::alignLinMemForward(iterator, iterator, iterator, iterator, libmaus2::lcs::AlignmentTraceContainer&, uint64_t, bool) [with iterator = __gnu_cxx::__normal_iterator >; uint64_t = long unsigned int]’ 2219 | return alignLinMemForward(SLA,ab,ae,bb,be,ATC,d,corclip); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ test/testnpl.cpp:101:84: required from here 101 | libmaus2::lcs::NNPAlignResult nres = cor.alignLinMemForward(a.begin(),a.end(),b.begin(),b.end(),ATC); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/lcs/NNPCor.hpp:2114:42: warning: variable ‘ed’ set but not used [-Wunused-but-set-variable=] 2114 | uint64_t ed = 0; | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testkcnt-testkcnt.o `test -f 'test/testkcnt.cpp' || echo './'`test/testkcnt.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testintervaltree-testintervaltree.o `test -f 'test/testintervaltree.cpp' || echo './'`test/testintervaltree.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testbamgetrefreg-testbamgetrefreg.o `test -f 'test/testbamgetrefreg.cpp' || echo './'`test/testbamgetrefreg.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from test/testbamgetrefreg.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/teststringgraph-teststringgraph.o `test -f 'test/teststringgraph.cpp' || echo './'`test/teststringgraph.cpp In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from test/teststringgraph.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlognormal-testlognormal.o `test -f 'test/testlognormal.cpp' || echo './'`test/testlognormal.cpp In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/fastx/FastInterval.hpp:25, from ./libmaus2/fastx/FastAReader.hpp:31, from ./libmaus2/fastx/StreamFastAReader.hpp:23, from test/testlognormal.cpp:20: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testConstantSumCombinatorics-testConstantSumCombinatorics.o `test -f 'test/testConstantSumCombinatorics.cpp' || echo './'`test/testConstantSumCombinatorics.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testmatrix-testmatrix.o `test -f 'test/testmatrix.cpp' || echo './'`test/testmatrix.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testconvpowercache-testconvpowercache.o `test -f 'test/testconvpowercache.cpp' || echo './'`test/testconvpowercache.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlassort-testlassort.o `test -f 'test/testlassort.cpp' || echo './'`test/testlassort.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from ./libmaus2/dazzler/align/OverlapData.hpp:23, from ./libmaus2/dazzler/align/OverlapParser.hpp:22, from ./libmaus2/dazzler/align/SimpleOverlapParser.hpp:22, from ./libmaus2/dazzler/align/LasSort2.hpp:21, from test/testlassort.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/LasSort2.hpp:26: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnnplocalaligner-testnnplocalaligner.o `test -f 'test/testnnplocalaligner.cpp' || echo './'`test/testnnplocalaligner.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testBamRawDecoder-testBamRawDecoder.o `test -f 'test/testBamRawDecoder.cpp' || echo './'`test/testBamRawDecoder.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testpanic-testpanic.o `test -f 'test/testpanic.cpp' || echo './'`test/testpanic.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from test/testnnplocalaligner.cpp:21: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from test/testBamRawDecoder.cpp:21: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/dazzler/align/OverlapIndexer.hpp:30, from ./libmaus2/dazzler/align/AlignmentWriter.hpp:21, from test/testnnplocalaligner.cpp:24: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:183:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(const std::string&, uint64_t) [with _data_type = libmaus2::dazzler::align::OverlapMeta; unsigned int _base_level_log = 8; unsigned int _inner_level_log = 3; _comparator = std::less; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 183 | setup(rcache_thres); | ^~~~~ ./libmaus2/dazzler/align/OverlapIndexer.hpp:109:108: required from here 109 | libmaus2::index::ExternalMemoryIndexDecoder EMID(indexname); | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testavlset-testavlset.o `test -f 'test/testavlset.cpp' || echo './'`test/testavlset.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testlibcurl-testlibcurl.o `test -f 'test/testlibcurl.cpp' || echo './'`test/testlibcurl.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testRunLengthBitVector-testRunLengthBitVector.o `test -f 'test/testRunLengthBitVector.cpp' || echo './'`test/testRunLengthBitVector.cpp test/testRunLengthBitVector.cpp: In function ‘void testRunLengthBitVector(const libmaus2::util::ArgParser&)’: test/testRunLengthBitVector.cpp:124:34: warning: variable ‘runsum’ set but not used [-Wunused-but-set-variable=] 124 | uint64_t runsum = 0; | ^~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from test/testRunLengthBitVector.cpp:19: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testnplself-testnplself.o `test -f 'test/testnplself.cpp' || echo './'`test/testnplself.cpp In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/lcs/NPLSelf.hpp:21, from test/testnplself.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testCopy-testCopy.o `test -f 'test/testCopy.cpp' || echo './'`test/testCopy.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testprotalign-testprotalign.o `test -f 'test/testprotalign.cpp' || echo './'`test/testprotalign.cpp riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testparasail-testparasail.o `test -f 'test/testparasail.cpp' || echo './'`test/testparasail.cpp In file included from ./libmaus2/protein/ProteinAlignment.hpp:26, from test/testparasail.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o test/testThreadPool-testThreadPool.o `test -f 'test/testThreadPool.cpp' || echo './'`test/testThreadPool.cpp /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/la-StaticInitialization.lo `test -f 'libmaus2/StaticInitialization.cpp' || echo './'`libmaus2/StaticInitialization.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -fPIC -DPIC -o libmaus2/.libs/la-StaticInitialization.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bitio/la-CompactArray.lo `test -f 'libmaus2/bitio/CompactArray.cpp' || echo './'`libmaus2/bitio/CompactArray.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -fPIC -DPIC -o libmaus2/bitio/.libs/la-CompactArray.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/aio/FileFragment.hpp:27, from ./libmaus2/sorting/PairFileSorting.hpp:27, from libmaus2/StaticInitialization.cpp:499: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bitio/CompactArray.cpp -o libmaus2/bitio/la-CompactArray.o >/dev/null 2>&1 In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/BamAlignmentDecoder.hpp:22, from ./libmaus2/bambam/BamDecoder.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderFactory.hpp:23, from libmaus2/StaticInitialization.cpp:560: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/BamAlignmentDecoder.hpp:24: ./libmaus2/bambam/BamHeaderLowMem.hpp: In member function ‘void libmaus2::bambam::BamHeaderLowMem::setupFromText()’: ./libmaus2/bambam/BamHeaderLowMem.hpp:366:58: warning: variable ‘ln’ set but not used [-Wunused-but-set-variable=] 366 | uint64_t ln = 0; | ^~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-RankTable.lo `test -f 'libmaus2/rank/RankTable.cpp' || echo './'`libmaus2/rank/RankTable.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-RankTable.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/rank/la-log2table.lo `test -f 'libmaus2/rank/log2table.cpp' || echo './'`libmaus2/rank/log2table.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/log2table.cpp -fPIC -DPIC -o libmaus2/rank/.libs/la-log2table.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/RankTable.cpp -o libmaus2/rank/la-RankTable.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/rank/log2table.cpp -o libmaus2/rank/la-log2table.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fastx/la-isFastQ.lo `test -f 'libmaus2/fastx/isFastQ.cpp' || echo './'`libmaus2/fastx/isFastQ.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -fPIC -DPIC -o libmaus2/fastx/.libs/la-isFastQ.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/wavelet/la-toWaveletTreeBits.lo `test -f 'libmaus2/wavelet/toWaveletTreeBits.cpp' || echo './'`libmaus2/wavelet/toWaveletTreeBits.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -fPIC -DPIC -o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fastx/isFastQ.cpp -o libmaus2/fastx/la-isFastQ.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/la-divsufsort.lo `test -f 'libmaus2/suffixsort/divsufsort.cpp' || echo './'`libmaus2/suffixsort/divsufsort.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -fPIC -DPIC -o libmaus2/suffixsort/.libs/la-divsufsort.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/divsufsort.cpp -o libmaus2/suffixsort/la-divsufsort.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/digest/la-md5.lo `test -f 'libmaus2/digest/md5.cpp' || echo './'`libmaus2/digest/md5.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/md5.cpp -fPIC -DPIC -o libmaus2/digest/.libs/la-md5.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/math/la-primes16.lo `test -f 'libmaus2/math/primes16.cpp' || echo './'`libmaus2/math/primes16.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/primes16.cpp -fPIC -DPIC -o libmaus2/math/.libs/la-primes16.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/digest/md5.cpp -o libmaus2/digest/la-md5.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/math/primes16.cpp -o libmaus2/math/la-primes16.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/util/la-OutputFileNameTools.lo `test -f 'libmaus2/util/OutputFileNameTools.cpp' || echo './'`libmaus2/util/OutputFileNameTools.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -fPIC -DPIC -o libmaus2/util/.libs/la-OutputFileNameTools.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/select/la-ESelectBase.lo `test -f 'libmaus2/select/ESelectBase.cpp' || echo './'`libmaus2/select/ESelectBase.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -fPIC -DPIC -o libmaus2/select/.libs/la-ESelectBase.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/util/OutputFileNameTools.cpp -o libmaus2/util/la-OutputFileNameTools.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/wavelet/toWaveletTreeBits.cpp -o libmaus2/wavelet/la-toWaveletTreeBits.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-CigarStringParser.lo `test -f 'libmaus2/bambam/CigarStringParser.cpp' || echo './'`libmaus2/bambam/CigarStringParser.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-CigarStringParser.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/select/ESelectBase.cpp -o libmaus2/select/la-ESelectBase.o >/dev/null 2>&1 In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from libmaus2/bambam/CigarStringParser.cpp:20: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lz/la-SnappyCompress.lo `test -f 'libmaus2/lz/SnappyCompress.cpp' || echo './'`libmaus2/lz/SnappyCompress.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -fPIC -DPIC -o libmaus2/lz/.libs/la-SnappyCompress.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/CigarStringParser.cpp -o libmaus2/bambam/la-CigarStringParser.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lz/SnappyCompress.cpp -o libmaus2/lz/la-SnappyCompress.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEndsContainer.lo `test -f 'libmaus2/bambam/ReadEndsContainer.cpp' || echo './'`libmaus2/bambam/ReadEndsContainer.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEndsContainer.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/la-ReadEnds.lo `test -f 'libmaus2/bambam/ReadEnds.cpp' || echo './'`libmaus2/bambam/ReadEnds.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -fPIC -DPIC -o libmaus2/bambam/.libs/la-ReadEnds.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-IndexLoaderBase.lo `test -f 'libmaus2/huffman/IndexLoaderBase.cpp' || echo './'`libmaus2/huffman/IndexLoaderBase.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-IndexLoaderBase.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsContainer.hpp:23, from libmaus2/bambam/ReadEndsContainer.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/ReadEndsBase.hpp:22, from ./libmaus2/bambam/ReadEnds.hpp:22, from libmaus2/bambam/ReadEnds.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/StaticInitialization.cpp -o libmaus2/la-StaticInitialization.o >/dev/null 2>&1 In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/IndexLoaderBase.cpp -o libmaus2/huffman/la-IndexLoaderBase.o >/dev/null 2>&1 In file included from ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:31, from ./libmaus2/bambam/ReadEndsContainer.hpp:34: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp: In instantiation of ‘void libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::setup(uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; uint64_t = long unsigned int]’: ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:189:5: required from ‘libmaus2::index::ExternalMemoryIndexDecoder<_data_type, _base_level_log, _inner_level_log, _comparator>::ExternalMemoryIndexDecoder(std::istream&, uint64_t) [with _data_type = libmaus2::bambam::ReadEndsBase; unsigned int _base_level_log = 9; unsigned int _inner_level_log = 2; _comparator = std::less; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 189 | setup(rcache_thres); | ^~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:76:6: required from ‘libmaus2::index::ExternalMemoryIndexDecoder::unique_ptr_type libmaus2::bambam::ReadEndsBlockDecoderBase<_proxy>::openIndex() [with bool _proxy = true; libmaus2::index::ExternalMemoryIndexDecoder::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 76 | new libmaus2::index::ExternalMemoryIndexDecoder(index) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBase.hpp:140:15: required from ‘libmaus2::bambam::ReadEndsBlockDecoderBase<_proxy>::ReadEndsBlockDecoderBase(libmaus2::bambam::ReadEndsBlockDecoderBaseCollectionInfoDataStreamProvider&, libmaus2::bambam::ReadEndsBlockDecoderBaseCollectionInfoIndexStreamProvider&, std::istream&, std::istream&, uint64_t, uint64_t) [with bool _proxy = true; std::istream = std::basic_istream; uint64_t = long unsigned int]’ 140 | Pindex(openIndex()), | ^~~~~~~~~ ./libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp:140:8: required from ‘libmaus2::bambam::ReadEndsBlockDecoderBaseCollection<_proxy>::ReadEndsBlockDecoderBaseCollection(const std::vector&, bool, uint64_t) [with bool _proxy = true; uint64_t = long unsigned int]’ 140 | new libmaus2::bambam::ReadEndsBlockDecoderBase( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | subinfo, | ~~~~~~~~ 142 | subinfo, | ~~~~~~~~ 143 | *(subinfo.datastr), | ~~~~~~~~~~~~~~~~~~~ 144 | *(subinfo.indexstr), | ~~~~~~~~~~~~~~~~~~~~ 145 | subinfo.indexoffset.at(i), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 | subinfo.blockelcnt.at(i) | ~~~~~~~~~~~~~~~~~~~~~~~~ 147 | ) | ~ ./libmaus2/bambam/ReadEndsContainer.hpp:590:6: required from here 590 | ) | ^ ./libmaus2/index/ExternalMemoryIndexDecoder.hpp:99:46: warning: variable ‘numcache’ set but not used [-Wunused-but-set-variable=] 99 | unsigned int numcache = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEnds.cpp -o libmaus2/bambam/la-ReadEnds.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/ReadEndsContainer.cpp -o libmaus2/bambam/la-ReadEndsContainer.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/huffman/la-KvInitResult.lo `test -f 'libmaus2/huffman/KvInitResult.cpp' || echo './'`libmaus2/huffman/KvInitResult.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -fPIC -DPIC -o libmaus2/huffman/.libs/la-KvInitResult.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/huffman/KvInitResult.cpp -o libmaus2/huffman/la-KvInitResult.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/fm/la-MausFmToBwaConversion.lo `test -f 'libmaus2/fm/MausFmToBwaConversion.cpp' || echo './'`libmaus2/fm/MausFmToBwaConversion.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -fPIC -DPIC -o libmaus2/fm/.libs/la-MausFmToBwaConversion.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from libmaus2/fm/MausFmToBwaConversion.cpp:24: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/gamma/GammaRLDecoder.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixtree/la-CompressedSuffixTree.lo `test -f 'libmaus2/suffixtree/CompressedSuffixTree.cpp' || echo './'`libmaus2/suffixtree/CompressedSuffixTree.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -fPIC -DPIC -o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.lo `test -f 'libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp' || echo './'`libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp -fPIC -DPIC -o libmaus2/gamma/.libs/la-SparseGammaGapFileIndexDecoderEntry.o In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/huffman/HuffmanTree.hpp:25, from ./libmaus2/wavelet/ImpCompactHuffmanWaveletTree.hpp:26, from ./libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp:23, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:22, from libmaus2/suffixtree/CompressedSuffixTree.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.cpp -o libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/lcs/la-EditDistanceResult.lo `test -f 'libmaus2/lcs/EditDistanceResult.cpp' || echo './'`libmaus2/lcs/EditDistanceResult.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/EditDistanceResult.cpp -fPIC -DPIC -o libmaus2/lcs/.libs/la-EditDistanceResult.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/lcs/EditDistanceResult.cpp -o libmaus2/lcs/la-EditDistanceResult.o >/dev/null 2>&1 In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/util/ImpCompactNumberArray.hpp:26, from ./libmaus2/rmq/RMMTree.hpp:22, from ./libmaus2/suffixtree/CompressedSuffixTree.hpp:26: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/wavelet/ImpHuffmanWaveletTree.hpp:302:54: required from here 302 | : n(rn), sroot(rsroot), dicts(numnodes), root(0), enctable(sroot.get()), maxdepth(0), nodepos(rnodepos) | ^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/hashing/la-Crc32.lo `test -f 'libmaus2/hashing/Crc32.cpp' || echo './'`libmaus2/hashing/Crc32.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/hashing/Crc32.cpp -fPIC -DPIC -o libmaus2/hashing/.libs/la-Crc32.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/hashing/Crc32.cpp -o libmaus2/hashing/la-Crc32.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/hashing/la-MurmurHash3.lo `test -f 'libmaus2/hashing/MurmurHash3.cpp' || echo './'`libmaus2/hashing/MurmurHash3.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/hashing/MurmurHash3.cpp -fPIC -DPIC -o libmaus2/hashing/.libs/la-MurmurHash3.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/hashing/MurmurHash3.cpp -o libmaus2/hashing/la-MurmurHash3.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/trie/la-SimpleTrie.lo `test -f 'libmaus2/trie/SimpleTrie.cpp' || echo './'`libmaus2/trie/SimpleTrie.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/trie/SimpleTrie.cpp -fPIC -DPIC -o libmaus2/trie/.libs/la-SimpleTrie.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/trie/SimpleTrie.cpp -o libmaus2/trie/la-SimpleTrie.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixtree/CompressedSuffixTree.cpp -o libmaus2/suffixtree/la-CompressedSuffixTree.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/alignment/la-FactorMatchInfo.lo `test -f 'libmaus2/alignment/FactorMatchInfo.cpp' || echo './'`libmaus2/alignment/FactorMatchInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -fPIC -DPIC -o libmaus2/alignment/.libs/la-FactorMatchInfo.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/FactorMatchInfo.cpp -o libmaus2/alignment/la-FactorMatchInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/alignment/la-KmerInfo.lo `test -f 'libmaus2/alignment/KmerInfo.cpp' || echo './'`libmaus2/alignment/KmerInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/KmerInfo.cpp -fPIC -DPIC -o libmaus2/alignment/.libs/la-KmerInfo.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/alignment/KmerInfo.cpp -o libmaus2/alignment/la-KmerInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-ValidationFragment.lo `test -f 'libmaus2/bambam/parallel/ValidationFragment.cpp' || echo './'`libmaus2/bambam/parallel/ValidationFragment.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/fm/MausFmToBwaConversion.cpp -o libmaus2/fm/la-MausFmToBwaConversion.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo `test -f 'libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp' || echo './'`libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp -fPIC -DPIC -o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-FastaInfo.lo `test -f 'libmaus2/dazzler/db/FastaInfo.cpp' || echo './'`libmaus2/dazzler/db/FastaInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/FastaInfo.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-FastaInfo.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/FastaInfo.cpp -o libmaus2/dazzler/db/la-FastaInfo.o >/dev/null 2>&1 In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/bambam/BamAuxFilterVector.hpp:22, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:27, from ./libmaus2/bambam/BamAlignment.hpp:24, from ./libmaus2/bambam/parallel/PushBackSpace.hpp:22, from ./libmaus2/bambam/parallel/AlignmentBuffer.hpp:22, from ./libmaus2/bambam/parallel/ValidationFragment.hpp:22, from libmaus2/bambam/parallel/ValidationFragment.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-IndexBase.lo `test -f 'libmaus2/dazzler/db/IndexBase.cpp' || echo './'`libmaus2/dazzler/db/IndexBase.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/IndexBase.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-IndexBase.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/IndexBase.cpp -o libmaus2/dazzler/db/la-IndexBase.o >/dev/null 2>&1 In file included from ./libmaus2/bambam/CigarStringParser.hpp:25, from ./libmaus2/bambam/BamAlignmentDecoderBase.hpp:35: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-DatabaseFile.lo `test -f 'libmaus2/dazzler/db/DatabaseFile.cpp' || echo './'`libmaus2/dazzler/db/DatabaseFile.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/DatabaseFile.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/GenericInputControlStreamInfo.cpp -o libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/db/la-Read.lo `test -f 'libmaus2/dazzler/db/Read.cpp' || echo './'`libmaus2/dazzler/db/Read.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -fPIC -DPIC -o libmaus2/dazzler/db/.libs/la-Read.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/bambam/parallel/ValidationFragment.cpp -o libmaus2/bambam/parallel/la-ValidationFragment.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/Read.cpp -o libmaus2/dazzler/db/la-Read.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/db/DatabaseFile.cpp -o libmaus2/dazzler/db/la-DatabaseFile.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Path.lo `test -f 'libmaus2/dazzler/align/Path.cpp' || echo './'`libmaus2/dazzler/align/Path.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Path.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Path.cpp -o libmaus2/dazzler/align/la-Path.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/dazzler/align/la-Overlap.lo `test -f 'libmaus2/dazzler/align/Overlap.cpp' || echo './'`libmaus2/dazzler/align/Overlap.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -fPIC -DPIC -o libmaus2/dazzler/align/.libs/la-Overlap.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-InputStreamInstance.lo `test -f 'libmaus2/aio/InputStreamInstance.cpp' || echo './'`libmaus2/aio/InputStreamInstance.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-InputStreamInstance.o In file included from ./libmaus2/lcs/Aligner.hpp:21, from ./libmaus2/dazzler/align/Overlap.hpp:22, from libmaus2/dazzler/align/Overlap.cpp:18: ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2057 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable ‘bpos’ set but not used [-Wunused-but-set-variable=] 2089 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2136 | uint64_t apos = 0, bpos = 0; | ^~~~ ./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function ‘static std::pair libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const libmaus2::lcs::BaseConstants::step_type*, const libmaus2::lcs::BaseConstants::step_type*, uint64_t)’: ./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable ‘apos’ set but not used [-Wunused-but-set-variable=] 2169 | uint64_t apos = 0, bpos = 0; | ^~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamInstance.lo `test -f 'libmaus2/aio/OutputStreamInstance.cpp' || echo './'`libmaus2/aio/OutputStreamInstance.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamInstance.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/dazzler/align/Overlap.cpp -o libmaus2/dazzler/align/la-Overlap.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/aio/la-OutputStreamFactoryContainer.lo `test -f 'libmaus2/aio/OutputStreamFactoryContainer.cpp' || echo './'`libmaus2/aio/OutputStreamFactoryContainer.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -fPIC -DPIC -o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo `test -f 'libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp:23, from ./libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp:23, from libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp:18: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamFactoryContainer.cpp -o libmaus2/aio/la-OutputStreamFactoryContainer.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.cpp -o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo `test -f 'libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp' || echo './'`libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp -fPIC -DPIC -o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/InputStreamInstance.cpp -o libmaus2/aio/la-InputStreamInstance.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/aio/OutputStreamInstance.cpp -o libmaus2/aio/la-OutputStreamInstance.o >/dev/null 2>&1 In file included from ./libmaus2/bitio/BitVector.hpp:29, from ./libmaus2/util/IntervalTree.hpp:25, from ./libmaus2/gamma/GammaRLDecoder.hpp:28, from ./libmaus2/gamma/GammaRLEncoder.hpp:29, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:24, from ./libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:19: ./libmaus2/rank/ERank3C.hpp: In constructor ‘libmaus2::rank::ERank3C::ERank3C(const uint16_t*, uint64_t)’: ./libmaus2/rank/ERank3C.hpp:346:58: warning: variable ‘mc’ set but not used [-Wunused-but-set-variable=] 346 | uint64_t mc = 0; // total 1 bits accu | ^~ libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp: In static member function ‘static void libmaus2::suffixsort::bwtb3m::BwtComputeSSA::computeSSA(std::string, uint64_t, uint64_t, std::string, bool, uint64_t, uint64_t, uint64_t, std::ostream*, std::string, std::string)’: libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:576:26: warning: variable ‘bc’ set but not used [-Wunused-but-set-variable=] 576 | uint64_t bc = 0; | ^~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLDecoder.hpp:27, from ./libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp:22, from libmaus2/suffixsort/bwtb3m/BwtComputeSSA.cpp:18: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:24: ./libmaus2/util/AtomicArray.hpp: At global scope: ./libmaus2/util/AtomicArray.hpp:45:43: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 45 | AtomicArray(AtomicArray const & O) = delete; | ^~~~~~~~~~~~~~~~~ ./libmaus2/util/AtomicArray.hpp:45:43: note: remove the ‘< >’ In file included from ./libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp:24: ./libmaus2/suffixsort/GapArrayByte.hpp: In member function ‘void libmaus2::suffixsort::GapArrayByte::flush()’: ./libmaus2/suffixsort/GapArrayByte.hpp:134:42: warning: variable ‘overflowcnt’ set but not used [-Wunused-but-set-variable=] 134 | uint64_t overflowcnt = 0; | ^~~~~~~~~~~ In file included from ./libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp:27, from ./libmaus2/suffixsort/BwtMergeBlockSortResult.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:33: ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printGenerate(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:207:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 207 | uint64_t batchcnt = 0; | ^~~~~~~~ ./libmaus2/util/DirectoryStructure.hpp: In member function ‘std::string libmaus2::util::DirectoryStructure::printRemove(std::ostream&, std::string, uint64_t) const’: ./libmaus2/util/DirectoryStructure.hpp:282:58: warning: variable ‘batchcnt’ set but not used [-Wunused-but-set-variable=] 282 | uint64_t batchcnt = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:183, from ./libmaus2/huffman/CanonicalEncoder.hpp:26, from ./libmaus2/huffman/RLEncoder.hpp:25, from ./libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp:22: ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 2]’: ./libmaus2/huffman/HuffmanSorting.hpp:860:55: required from here 860 | huffman::EncodeTable enctable ( root ); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/huffman/huffman.hpp:188: ./libmaus2/huffman/HuffmanSorting.hpp: In instantiation of ‘static void libmaus2::huffman::HuffmanSorting::uncompressHuffmanCoded(uint64_t*, uint64_t, uint64_t, uint64_t, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::HuffmanTreeNode*, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::DecodeTable&, const libmaus2::huffman::EncodeTable&, const libmaus2::huffman::EncodeTable&) [with unsigned int lookupwords = 2; uint64_t = long unsigned int]’: ./libmaus2/huffman/HuffmanSorting.hpp:1091:27: required from here 1091 | uncompressHuffmanCoded(acode.get(), 0 /* bit offset */, lowhalf /* syms */, firsthighsym, enctable,dectable,root.get(),dectable0,dectable1,enctable0,enctable1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/huffman/HuffmanSorting.hpp:534:42: warning: variable ‘alldecoffset’ set but not used [-Wunused-but-set-variable=] 534 | uint64_t alldecoffset = highdecoffset; | ^~~~~~~~~~~~ ./libmaus2/huffman/EncodeTable.hpp: In instantiation of ‘libmaus2::huffman::EncodeTable::EncodeTable(const libmaus2::huffman::HuffmanTreeNode*) [with unsigned int words = 1]’: ./libmaus2/huffman/CanonicalEncoder.hpp:219:116: required from here 219 | return ::libmaus2::huffman::EncodeTable<1>::unique_ptr_type(new ::libmaus2::huffman::EncodeTable<1>(Ptree.get())); | ^ ./libmaus2/huffman/EncodeTable.hpp:274:42: warning: variable ‘numleafs’ set but not used [-Wunused-but-set-variable=] 274 | uint64_t numleafs = 0; | ^~~~~~~~ In file included from ./libmaus2/wavelet/RlToHwtBase.hpp:30, from ./libmaus2/wavelet/RlToHwtTermRequest.hpp:22, from ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:44: ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree(libmaus2::autoarray::AutoArray&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree*, uint64_t) [with bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:862:90: required from ‘libmaus2::suffixsort::BwtMergeBlockSortResult libmaus2::suffixsort::BwtMergeBlockSortRequest::sortBlock(std::ostream*) const [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::ostream = std::basic_ostream]’ 862 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTree( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 863 | UT,tmpfilenames.getHWT(),tmpfileprefix,uhnode.get(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 | 1/* num threads */ | ~~~~~~~~~~~~~~~~~~ 865 | ); | ~ ./libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp:979:79: required from ‘std::string libmaus2::suffixsort::BwtMergeBlockSortRequest::dispatch(std::ostream*) const [with rl_encoder = libmaus2::huffman::RLEncoderTemplate, libmaus2::bitio::FastWriteBitWriterTemplate >, 128, 255, false> > >; std::string = std::__cxx11::basic_string; std::ostream = std::basic_ostream]’ 979 | result = sortBlock,rl_encoder>(logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp:128:118: required from here 128 | block->sortresult = ::libmaus2::suffixsort::BwtMergeBlockSortResult::load(block->sortreq.dispatch(logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:874:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 874 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:879:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 879 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:755:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 755 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl(const std::string&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1368:123: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwt(const std::string&, const std::string&, std::string, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1368 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRl( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1369 | bwt,hwt,tmpprefix,H, | ~~~~~~~~~~~~~~~~~~~~ 1370 | utf8WaveletMaxPartMem() /* part size maximum */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1371 | utf8WaveletMaxThreads()); | ~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4191:65: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4191 | libmaus2::wavelet::RlToHwtBase::rlToHwt(options.outfn, outhwt, options.tmpfilenamebase+"_finalhwttmp",options.numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ 27 | return libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate >::computeBwt(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here 71 | return computeBwtTemplate<32>(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1419:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 1419 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1424:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 1424 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1299:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1299 | uint64_t numsyms1 = 0; | ^~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp: In instantiation of ‘static void libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm(const std::vector >&, const std::string&, const std::string&, const libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t, uint64_t) [with rl_decoder = libmaus2::huffman::RLDecoder; bool radixsort = true; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’: ./libmaus2/wavelet/RlToHwtBase.hpp:1500:131: required from ‘static void libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, libmaus2::huffman::HuffmanTree&, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1500 | ::libmaus2::wavelet::Utf8ToImpCompactHuffmanWaveletTree::constructWaveletTreeFromRlWithTerm( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1501 | bwt,hwt,tmpprefix,H,p0r,bwtterm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1502 | utf8WaveletMaxPartMem() /* maximum part size */, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1503 | utf8WaveletMaxThreads() | ~~~~~~~~~~~~~~~~~~~~~~~ 1504 | ); | ~ ./libmaus2/wavelet/RlToHwtBase.hpp:1687:17: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtBase<_utf8_input_type, _rl_decoder>::rlToHwtTerm(const std::vector >&, const std::string&, std::string, std::string, uint64_t, uint64_t, uint64_t) [with bool _utf8_input_type = true; _rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int]’ 1687 | rlToHwtTerm(bwt,hwt,tmpprefix,H,bwtterm,p0r,numthreads); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/wavelet/RlToHwtTermRequest.hpp:118:67: required from ‘libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::wavelet::RlToHwtTermRequest::dispatch() [with rl_decoder = libmaus2::huffman::RLDecoder; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >]’ 118 | libmaus2::wavelet::RlToHwtBase::rlToHwtTerm(bwt,hwt,tmpprefix,huftreefilename,bwtterm,p0r,numthreads) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:926:102: required from ‘static libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::ensureWaveletTreeGenerated(const libmaus2::suffixsort::BwtMergeBlockSortResult&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; libmaus2::wavelet::ImpCompactHuffmanWaveletTreeTemplate::unique_ptr_type = std::unique_ptr, std::default_delete > >; std::ostream = std::basic_ostream]’ 926 | libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ptr(ureq->dispatch()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:997:105: required from ‘static libmaus2::suffixsort::bwtb3m::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const std::string&, uint64_t, uint64_t, uint64_t, uint64_t, uint64_t, const libmaus2::suffixsort::BwtMergeBlockSortResult&, const std::vector >&, libmaus2::lf::DArray*, const std::vector&, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int; std::ostream = std::basic_ostream]’ 997 | ::libmaus2::wavelet::ImpCompactHuffmanWaveletTree::unique_ptr_type ICHWL(ensureWaveletTreeGenerated(blockresults,logstr)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1161:28: required from ‘static libmaus2::suffixsort::bwtb3m::GapArrayComputationResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeGapArray(libmaus2::util::TempFileNameGenerator&, const std::string&, uint64_t, const libmaus2::suffixsort::bwtb3m::MergeStrategyMergeGapRequest&, const std::vector >&, libmaus2::lf::DArray*, uint64_t, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int; std::ostream = std::basic_ostream]’ 1161 | return computeGapArray(gtmpgen,fn,fs,blockstart,cblocksize,nextblockstart,mergeprocrightend, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1162 | blockresults,mergedgtname,accD,zblocks,numthreads,logstr,verbose); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:1960:61: required from ‘static void libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::mergeBlocks(libmaus2::util::TempFileNameGenerator&, libmaus2::suffixsort::bwtb3m::MergeStrategyMergeInternalBlock&, std::string, uint64_t, uint64_t, uint64_t, uint64_t, const std::map&, uint64_t, const std::string&, std::ostream*, int) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::string = std::__cxx11::basic_string; uint64_t = long unsigned int; std::ostream = std::basic_ostream]’ 1960 | GapArrayComputationResult const GACR = computeGapArray( | ~~~~~~~~~~~~~~~^ 1961 | gtmpgen, | ~~~~~~~~ 1962 | fn,fs,*(mergereq.gaprequests[0]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1963 | mergereq.children[1]->sortresult.getFiles().getGT(), // previous gt files | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1964 | // tmpfilenamebase + "_gparts", // new gt files | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1965 | accD.get(), | ~~~~~~~~~~~ 1966 | numthreads, | ~~~~~~~~~~~ 1967 | logstr, | ~~~~~~~ 1968 | verbose | ~~~~~~~ 1969 | ); | ~ ./libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp:4049:19: required from ‘static libmaus2::suffixsort::bwtb3m::BwtMergeSortResult libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate::computeBwt(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with input_types_type = libmaus2::suffixsort::ByteInputTypes<32>; std::ostream = std::basic_ostream]’ 4049 | mergeBlocks( | ~~~~~~~~~~~^ 4050 | *gtmpgen, | ~~~~~~~~~ 4051 | *(dynamic_cast(p)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4052 | fn,state.getFS(), | ~~~~~~~~~~~~~~~~~ 4053 | rlencoderblocksize, | ~~~~~~~~~~~~~~~~~~~ 4054 | lfblockmult, | ~~~~~~~~~~~~ 4055 | options.numthreads, | ~~~~~~~~~~~~~~~~~~~ 4056 | chist,bwtterm, | ~~~~~~~~~~~~~~ 4057 | huftreefilename, | ~~~~~~~~~~~~~~~~ 4058 | logstr, | ~~~~~~~ 4059 | options.verbose | ~~~~~~~~~~~~~~~ 4060 | ); | ~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:27:122: required from ‘libmaus2::suffixsort::bwtb3m::BwtMergeSortResult computeBwtTemplate(const libmaus2::suffixsort::bwtb3m::BwtMergeSortOptions&, std::ostream*) [with unsigned int wordsize = 32; std::ostream = std::basic_ostream]’ 27 | return libmaus2::suffixsort::bwtb3m::BwtMergeSortTemplate >::computeBwt(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ libmaus2/suffixsort/bwtb3m/BwtMergeSort.cpp:71:32: required from here 71 | return computeBwtTemplate<32>(options,logstr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2048:90: warning: variable ‘l_numsyms0’ set but not used [-Wunused-but-set-variable=] 2048 | uint64_t l_numsyms0 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:2053:90: warning: variable ‘r_numsyms1’ set but not used [-Wunused-but-set-variable=] 2053 | uint64_t r_numsyms1 = 0; | ^~~~~~~~~~ ./libmaus2/wavelet/Utf8ToImpCompactHuffmanWaveletTree.hpp:1929:66: warning: variable ‘numsyms1’ set but not used [-Wunused-but-set-variable=] 1929 | uint64_t numsyms1 = 0; | ^~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/timing/la-RealTimeClock.lo `test -f 'libmaus2/timing/RealTimeClock.cpp' || echo './'`libmaus2/timing/RealTimeClock.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -fPIC -DPIC -o libmaus2/timing/.libs/la-RealTimeClock.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-CDS.lo `test -f 'libmaus2/gtf/CDS.cpp' || echo './'`libmaus2/gtf/CDS.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/CDS.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-CDS.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/CDS.cpp -o libmaus2/gtf/la-CDS.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/timing/RealTimeClock.cpp -o libmaus2/timing/la-RealTimeClock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-Exon.lo `test -f 'libmaus2/gtf/Exon.cpp' || echo './'`libmaus2/gtf/Exon.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/Exon.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-Exon.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-ExonInfo.lo `test -f 'libmaus2/gtf/ExonInfo.cpp' || echo './'`libmaus2/gtf/ExonInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInfo.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonInfo.o libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/Exon.cpp -o libmaus2/gtf/la-Exon.o >/dev/null 2>&1 libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInfo.cpp -o libmaus2/gtf/la-ExonInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-ExonInterval.lo `test -f 'libmaus2/gtf/ExonInterval.cpp' || echo './'`libmaus2/gtf/ExonInterval.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonInterval.cpp -fPIC -DPIC -o libmaus2/gtf/.libs/la-ExonInterval.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/gtf/la-ExonSubInfo.lo `test -f 'libmaus2/gtf/ExonSubInfo.cpp' || echo './'`libmaus2/gtf/ExonSubInfo.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/gtf/ExonSubInfo.cpp -fPIC 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-fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-CacheLineSize.lo `test -f 'libmaus2/arch/CacheLineSize.cpp' || echo './'`libmaus2/arch/CacheLineSize.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/CacheLineSize.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-CacheLineSize.o /bin/bash ../libtool --tag=CXX --mode=compile riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c -o libmaus2/arch/la-PageSize.lo `test -f 'libmaus2/arch/PageSize.cpp' || echo './'`libmaus2/arch/PageSize.cpp libtool: compile: riscv64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/include -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -c libmaus2/arch/PageSize.cpp -fPIC -DPIC -o libmaus2/arch/.libs/la-PageSize.o libmaus2/arch/CacheLineSize.cpp: In function ‘uint64_t getCacheLineSizeLocal()’: libmaus2/arch/CacheLineSize.cpp:50:30: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘uint64_t*’ {aka ‘long unsigned int*’} [-Wformat=] 50 | fscanf(fp, "%d", &i); | ~^ ~~ | | | | | uint64_t* {aka long unsigned int*} | int* | %ld 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./.libs/libmaus2_arch.so -lz -L/usr/lib/gcc/riscv64-linux-gnu/16 -L/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -L/usr/lib -lstdc++ -lm -latomic_asneeded -lc -lgcc_s /usr/lib/gcc/riscv64-linux-gnu/16/crtendS.o /usr/lib/gcc/riscv64-linux-gnu/16/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_parallel.so.2 -o .libs/libmaus2_parallel.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so.2" && ln -s "libmaus2_parallel.so.2.0.813" "libmaus2_parallel.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_parallel.so" && ln -s "libmaus2_parallel.so.2.0.813" "libmaus2_parallel.so") libtool: link: ar cr .libs/libmaus2_parallel.a libmaus2/parallel/la-SimpleThreadWorkPackage.o libmaus2/parallel/la-StdSemaphore.o libmaus2/parallel/la-StdMutex.o 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"libmaus2_simd_align_256.so.2.0.813" "libmaus2_simd_align_256.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2_simd_align_256.so" && ln -s "libmaus2_simd_align_256.so.2.0.813" "libmaus2_simd_align_256.so") libtool: link: ar cr .libs/libmaus2_simd_align_256.a libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o libtool: link: ranlib .libs/libmaus2_simd_align_256.a libtool: link: ( cd ".libs" && rm -f "libmaus2_simd_align_256.la" && ln -s "../libmaus2_simd_align_256.la" "libmaus2_simd_align_256.la" ) /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -pthread 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libmaus2/util/.libs/la-PathTools.o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libmaus2/aio/.libs/la-PosixFdInput.o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o libmaus2/gtf/.libs/la-CDS.o libmaus2/gtf/.libs/la-Exon.o libmaus2/gtf/.libs/la-ExonInfo.o libmaus2/gtf/.libs/la-ExonInterval.o libmaus2/gtf/.libs/la-ExonSubInfo.o libmaus2/protein/.libs/la-Blosum62.o libmaus2/protein/.libs/la-CodonMapper.o libmaus2/bambam/.libs/la-ChecksumsFactory.o libmaus2/vcf/.libs/la-VCFSortEntry.o libmaus2/network/.libs/la-CurlInitObject.o libmaus2/network/.libs/la-CurlOutputBlock.o libmaus2/network/.libs/la-CurlResponseAcceptor.o libmaus2/network/.libs/la-HttpCurlResponseAcceptor.o libmaus2/network/.libs/la-FtpCurlResponseAcceptor.o libmaus2/network/.libs/la-CurlObject.o libmaus2/network/.libs/la-CurlObjectReader.o libmaus2/network/.libs/la-CurlObjectThreadCallable.o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libmaus2/network/.libs/la-CurlInputStream.o libmaus2/network/.libs/la-GetHostName.o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libmaus2/bambam/.libs/la-Scram.o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfDecompressContext.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfCompressContext.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf832.o 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-g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.813 libtool: link: (cd ".libs" && rm -f "libmaus2.so.2" && ln -s "libmaus2.so.2.0.813" "libmaus2.so.2") libtool: link: (cd ".libs" && rm -f "libmaus2.so" && ln -s "libmaus2.so.2.0.813" "libmaus2.so") libtool: link: ar cr .libs/libmaus2.a libmaus2/la-StaticInitialization.o libmaus2/bitio/la-CompactArray.o libmaus2/rank/la-RankTable.o libmaus2/rank/la-log2table.o libmaus2/fastx/la-isFastQ.o libmaus2/wavelet/la-toWaveletTreeBits.o libmaus2/suffixsort/la-divsufsort.o libmaus2/digest/la-md5.o libmaus2/math/la-primes16.o libmaus2/util/la-OutputFileNameTools.o libmaus2/select/la-ESelectBase.o libmaus2/bambam/la-CigarStringParser.o libmaus2/fastx/la-Phred.o libmaus2/lz/la-SnappyCompress.o libmaus2/bambam/la-ReadEndsContainer.o libmaus2/bambam/la-ReadEnds.o libmaus2/huffman/la-IndexLoaderBase.o libmaus2/bambam/la-BamAlignmentDecoderBase.o libmaus2/bambam/la-StrCmpNum.o libmaus2/huffman/la-KvInitResult.o libmaus2/fm/la-MausFmToBwaConversion.o libmaus2/util/la-TempFileNameGenerator.o libmaus2/util/la-TempFileNameGeneratorState.o libmaus2/util/la-ArgInfo.o libmaus2/util/la-BitList.o libmaus2/util/la-VarBitList.o libmaus2/util/la-Concat.o libmaus2/util/la-ConcatRequest.o libmaus2/util/la-ConsoleColor.o libmaus2/util/la-DynamicLoading.o libmaus2/util/la-GetFileSize.o libmaus2/util/la-Histogram.o libmaus2/util/la-HistogramSet.o libmaus2/util/la-IncreasingList.o libmaus2/util/la-IntervalTree.o libmaus2/util/la-GenericIntervalTree.o libmaus2/util/la-LookupIntervalTree.o libmaus2/digest/la-md5_interface.o libmaus2/util/la-MemUsage.o libmaus2/util/la-nstat.o libmaus2/util/la-SaturatingCounter.o libmaus2/util/la-StringSerialisation.o libmaus2/util/la-SuccinctBorderArray.o libmaus2/util/la-Terminal.o 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libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.o libmaus2/fastx/la-NameInfoBase.o libmaus2/bambam/parallel/la-RefIdInterval.o libmaus2/fastx/la-RefPathToken.o libmaus2/fastx/la-RefPathTokenVector.o libmaus2/dazzler/db/la-FastaInfo.o libmaus2/dazzler/db/la-IndexBase.o libmaus2/dazzler/db/la-DatabaseFile.o libmaus2/dazzler/db/la-Read.o libmaus2/dazzler/align/la-Path.o libmaus2/dazzler/align/la-Overlap.o libmaus2/lcs/la-AlignmentStatistics.o libmaus2/fastx/la-SingleWordDNABitBuffer.o libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/la-AlignerFactory.o libmaus2/lcs/la-BandedAlignerFactory.o libmaus2/aio/la-InputStreamInstance.o libmaus2/aio/la-OutputStreamInstance.o libmaus2/aio/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/la-TraceBlock.o libmaus2/dazzler/align/la-ApproximateRun.o libmaus2/suffixsort/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/la-OverlapMeta.o libmaus2/dazzler/align/la-Tandem.o libmaus2/dazzler/align/la-TandemVector.o libmaus2/math/la-GmpInteger.o libmaus2/math/la-GmpFloat.o libmaus2/dazzler/align/la-TracePoint.o libmaus2/lz/la-XzDecoder.o libmaus2/util/la-ArgParser.o libmaus2/fastx/la-DNAIndexMetaDataSequence.o libmaus2/fastx/la-DNAIndexMetaData.o libmaus2/bambam/la-PileVectorElement.o libmaus2/bambam/la-PileQualityVectorElement.o libmaus2/digest/la-SHA3_256.o libmaus2/fastx/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/la-DNARankBiDirRange.o libmaus2/lcs/la-NNPTraceElement.o libmaus2/lcs/la-NNPTraceContainer.o libmaus2/lcs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.o libmaus2/fastx/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.o libmaus2/lz/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.o libmaus2/aio/la-FileRemoval.o libmaus2/rank/la-DNARankMEM.o libmaus2/lcs/la-ChainAddQueueElement.o libmaus2/lcs/la-Chain.o libmaus2/lcs/la-ChainNode.o libmaus2/lcs/la-ChainNodeInfo.o libmaus2/lcs/la-ChainRemoveQueueElement.o libmaus2/lcs/la-ChainSplayTreeNode.o libmaus2/timing/la-RealTimeClock.o libmaus2/aio/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/la-OverlapHeader.o libmaus2/bambam/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.o libmaus2/aio/la-InputOutputStreamInstance.o libmaus2/dazzler/align/la-OverlapInfo.o libmaus2/dazzler/align/la-OverlapDataInterface.o libmaus2/util/la-PathTools.o libmaus2/aio/la-OFStreamOutputStreamFactory.o libmaus2/aio/la-PosixFdInput.o libmaus2/lz/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/la-BgzfDeflateZStreamBase.o libmaus2/gtf/la-CDS.o libmaus2/gtf/la-Exon.o libmaus2/gtf/la-ExonInfo.o libmaus2/gtf/la-ExonInterval.o libmaus2/gtf/la-ExonSubInfo.o libmaus2/protein/la-Blosum62.o libmaus2/protein/la-CodonMapper.o libmaus2/bambam/la-ChecksumsFactory.o libmaus2/vcf/la-VCFSortEntry.o libmaus2/network/la-CurlInitObject.o libmaus2/network/la-CurlOutputBlock.o libmaus2/network/la-CurlResponseAcceptor.o libmaus2/network/la-HttpCurlResponseAcceptor.o libmaus2/network/la-FtpCurlResponseAcceptor.o libmaus2/network/la-CurlObject.o libmaus2/network/la-CurlObjectReader.o libmaus2/network/la-CurlObjectThreadCallable.o libmaus2/network/la-CurlInputStreamBuffer.o libmaus2/network/la-CurlInputStream.o libmaus2/network/la-GetHostName.o libmaus2/aio/la-SecrecyInputStreamFactory.o libmaus2/aio/la-SecrecyOutputStreamFactory.o libmaus2/bambam/la-Scram.o libmaus2/bambam/parallel/la-ScramCramEncoding.o libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.o libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.o libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.o libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.o libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.o libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.o libtool: link: ranlib .libs/libmaus2.a libtool: link: ( cd ".libs" && rm -f "libmaus2.la" && ln -s "../libmaus2.la" "libmaus2.la" ) /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPool test/testThreadPool-testThreadPool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolRead test/testThreadPoolRead-testThreadPoolRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBgzfRead test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBgzfDecompress test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolRead test/testThreadPoolRead-testThreadPoolRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBgzfRead test/testThreadPoolBgzfRead-testThreadPoolBgzfRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBgzfDecompress test/testThreadPoolBgzfDecompress-testThreadPoolBgzfDecompress.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPool test/testThreadPool-testThreadPool.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBamParse test/testThreadPoolBamParse-testThreadPoolBamParse.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolBamAccumulate test/testThreadPoolBamAccumulate-testThreadPoolBamAccumulate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testThreadPoolCramEncode test/testThreadPoolCramEncode-testThreadPoolCramEncode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBamParse test/testThreadPoolBamParse-testThreadPoolBamParse.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolBamAccumulate test/testThreadPoolBamAccumulate-testThreadPoolBamAccumulate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testThreadPoolCramEncode test/testThreadPoolCramEncode-testThreadPoolCramEncode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testAIO test/testAIO-testAIO.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testAIO test/testAIO-testAIO.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbitbtree test/testbitbtree-testbitbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbitbtree test/testbitbtree-testbitbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBitIO test/testBitIO-testBitIO.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbtree test/testbtree-testbtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBitIO test/testBitIO-testBitIO.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbtree test/testbtree-testbtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBWTDyn test/testBWTDyn-testBWTDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBWTDyn test/testBWTDyn-testBWTDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBWTHufDyn test/testBWTHufDyn-testBWTHufDyn.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testDivSufSort test/testDivSufSort-testDivSufSort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testDNABitWords test/testDNABitWords-testDNABitWords.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testFastRead test/testFastRead-testFastRead.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testDivSufSort test/testDivSufSort-testDivSufSort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testDNABitWords test/testDNABitWords-testDNABitWords.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testFastRead test/testFastRead-testFastRead.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testHuffman test/testHuffman-testHuffman.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testIsa test/testIsa-testIsa.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testkmp test/testkmp-testkmp.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testHuffman test/testHuffman-testHuffman.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testIsa test/testIsa-testIsa.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlz test/testlz-testlz.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testkmp test/testkmp-testkmp.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testRank test/testRank-testRank.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlz test/testlz-testlz.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testRank test/testRank-testRank.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testToWaveletTreeBits test/testToWaveletTreeBits-testToWaveletTreeBits.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testWaveletExternal test/testWaveletExternal-testWaveletExternal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testTrie test/testTrie-testTrie.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testWaveletExternal test/testWaveletExternal-testWaveletExternal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbandedlcs test/testbandedlcs-testbandedlcs.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testTrie test/testTrie-testTrie.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamwriter test/testbamwriter-testbamwriter.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbandedlcs test/testbandedlcs-testbandedlcs.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testarraydecode test/testarraydecode-testarraydecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsnappy test/testsnappy-testsnappy.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamwriter test/testbamwriter-testbamwriter.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testarraydecode test/testarraydecode-testarraydecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsnappy test/testsnappy-testsnappy.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsnappyconcat test/testsnappyconcat-testsnappyconcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgunzip test/testgunzip-testgunzip.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsnappyconcat test/testsnappyconcat-testsnappyconcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgunzip test/testgunzip-testgunzip.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testhashcollisions test/testhashcollisions-testhashcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplebloomcollisions test/testsimplebloomcollisions-testsimplebloomcollisions.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testhashcollisions test/testhashcollisions-testhashcollisions.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplehash test/testsimplehash-testsimplehash.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplehash test/testsimplehash-testsimplehash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplecountinghash test/testsimplecountinghash-testsimplecountinghash.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdl test/testdl-testdl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdifenc test/testdifenc-testdifenc.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcachealignedalloc test/testcachealignedalloc-testcachealignedalloc.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsyncfastreaderbase test/testsyncfastreaderbase-testsyncfastreaderbase.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdl test/testdl-testdl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: 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libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastarecode test/testfastarecode-testfastarecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamtofastq test/testbamtofastq-testbamtofastq.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbwtmergeinternal test/testbwtmergeinternal-testbwtmergeinternal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastarewrite test/testfastarewrite-testfastarewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastarecode test/testfastarecode-testfastarecode.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamtofastq test/testbamtofastq-testbamtofastq.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamrange test/testbamrange-testbamrange.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamdamage test/testbamdamage-testbamdamage.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamrange test/testbamrange-testbamrange.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamdamage test/testbamdamage-testbamdamage.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgamma test/testgamma-testgamma.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testgamma test/testgamma-testgamma.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcompact test/testcompact-testcompact.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcompact test/testcompact-testcompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbytetocompact test/testbytetocompact-testbytetocompact.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testscramtosam test/testscramtosam-testscramtosam.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbytetocompact test/testbytetocompact-testbytetocompact.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ 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-pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testrmmtree test/testrmmtree-testrmmtree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testrmmtree test/testrmmtree-testrmmtree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so 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./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfqbgzf test/testfqbgzf-testfqbgzf.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcompactfastrandom test/testcompactfastrandom-testcompactfastrandom.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamindex test/testbamindex-testbamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamindex test/testbamindex-testbamindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastqstream 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-Wl,now -o .libs/testbamrewrite test/testbamrewrite-testbamrewrite.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastqstream test/testfastqstream-testfastqstream.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsort test/testsort-testsort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testexternalsort test/testexternalsort-testexternalsort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testcollatespeed test/testcollatespeed-testcollatespeed.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testexternalsort test/testexternalsort-testexternalsort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testcollatespeed test/testcollatespeed-testcollatespeed.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamheaderparser test/testbamheaderparser-testbamheaderparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamheaderparser test/testbamheaderparser-testbamheaderparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammergecoordinate test/testbammergecoordinate-testbammergecoordinate.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbammergecollate test/testbammergecollate-testbammergecollate.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbammergequeryname test/testbammergequeryname-testbammergequeryname.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamcat test/testbamcat-testbamcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamcat test/testbamcat-testbamcat.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testautoarray2d test/testautoarray2d-testautoarray2d.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testautoarray2d test/testautoarray2d-testautoarray2d.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testhist test/testhist-testhist.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastaparse test/testfastaparse-testfastaparse.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testhist test/testhist-testhist.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testvalidatebamindex test/testvalidatebamindex-testvalidatebamindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testfastaparse test/testfastaparse-testfastaparse.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testeditdistance test/testeditdistance-testeditdistance.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsimplethreadpoolbamdecode test/testsimplethreadpoolbamdecode-testsimplethreadpoolbamdecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimplethreadpool test/testsimplethreadpool-testsimplethreadpool.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgaparraybyte test/testgaparraybyte-testgaparraybyte.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la 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./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testzlibconcat test/testzlibconcat-testzlibconcat.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testfastablockrecode test/testfastablockrecode-testfastablockrecode.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat 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./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testdiag test/testdiag-testdiag.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testrlhist test/testrlhist-testrlhist.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnumcpus test/testnumcpus-testnumcpus.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlowmembamheaderparser test/testlowmembamheaderparser-testlowmembamheaderparser.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgeneflatfile test/testgeneflatfile-testgeneflatfile.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall 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libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbytecnt test/testbytecnt-testbytecnt.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsimpletrie test/testsimpletrie-testsimpletrie.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlru test/testlru-testlru.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o teststronglyconnectedcomponents test/teststronglyconnectedcomponents-teststronglyconnectedcomponents.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbytecnt test/testbytecnt-testbytecnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link 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./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlinebuffer test/testlinebuffer-testlinebuffer.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testtopologicalsorting test/testtopologicalsorting-testtopologicalsorting.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsamdecoder test/testsamdecoder-testsamdecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W 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./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsamdecoder test/testsamdecoder-testsamdecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testunsignedinteger test/testunsignedinteger-testunsignedinteger.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdecimalnumberparser test/testdecimalnumberparser-testdecimalnumberparser.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall 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./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsha test/testsha-testsha.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmd5 test/testmd5-testmd5.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testparallelbamvalidation test/testparallelbamvalidation-testparallelbamvalidation.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsha test/testsha-testsha.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testparallelbamrewrite test/testparallelbamrewrite-testparallelbamrewrite.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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.libs/testbammateerase test/testbammateerase-testbammateerase.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -L/lib -Wl,-z,relro -Wl,-z,now -o testparallelbamblocksort test/testparallelbamblocksort-testparallelbamblocksort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lgmp -lz /bin/bash ../libtool 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./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lgmp -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmapperm test/testmapperm-testmapperm.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testexternalmemoryindex test/testexternalmemoryindex-testexternalmemoryindex.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp 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testbwtconstruction test/testbwtconstruction-testbwtconstruction.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbwtconstructionfasta test/testbwtconstructionfasta-testbwtconstructionfasta.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. 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./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testarrayinput test/testarrayinput-testarrayinput.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testsymcnt test/testsymcnt-testsymcnt.o libmaus2.la 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-Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testsymcnt test/testsymcnt-testsymcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testgammapd test/testgammapd-testgammapd.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link 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./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testserialisedsorting test/testserialisedsorting-testserialisedsorting.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamnumericalindex test/testbamnumericalindex-testbamnumericalindex.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testdnasuffixtrav test/testdnasuffixtrav-testdnasuffixtrav.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 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./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnpl test/testnpl-testnpl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testkcnt 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-Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testkcnt test/testkcnt-testkcnt.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testintervaltree test/testintervaltree-testintervaltree.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testintervaltree test/testintervaltree-testintervaltree.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o teststringgraph test/teststringgraph-teststringgraph.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testbamgetrefreg test/testbamgetrefreg-testbamgetrefreg.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlognormal test/testlognormal-testlognormal.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/teststringgraph test/teststringgraph-teststringgraph.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlognormal test/testlognormal-testlognormal.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testmatrix test/testmatrix-testmatrix.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testconvpowercache test/testconvpowercache-testconvpowercache.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testConstantSumCombinatorics test/testConstantSumCombinatorics-testConstantSumCombinatorics.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testmatrix test/testmatrix-testmatrix.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlassort test/testlassort-testlassort.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testconvpowercache test/testconvpowercache-testconvpowercache.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlassort test/testlassort-testlassort.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnnplocalaligner test/testnnplocalaligner-testnnplocalaligner.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testBamRawDecoder test/testBamRawDecoder-testBamRawDecoder.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testpanic test/testpanic-testpanic.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testavlset test/testavlset-testavlset.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testpanic test/testpanic-testpanic.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testlibcurl test/testlibcurl-testlibcurl.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testavlset test/testavlset-testavlset.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testlibcurl test/testlibcurl-testlibcurl.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testnplself test/testnplself-testnplself.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testCopy test/testCopy-testCopy.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testRunLengthBitVector test/testRunLengthBitVector-testRunLengthBitVector.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testnplself test/testnplself-testnplself.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testCopy test/testCopy-testCopy.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testprotalign test/testprotalign-testprotalign.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz /bin/bash ../libtool --tag=CXX --mode=link riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -o testparasail test/testparasail-testparasail.o libmaus2.la libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la -lz libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testprotalign test/testprotalign-testprotalign.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread libtool: link: riscv64-linux-gnu-g++ -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/testparasail test/testparasail-testparasail.o ./.libs/libmaus2.so ./.libs/libmaus2_parallel.so ./.libs/libmaus2_autoarray.so ./.libs/libmaus2_exception.so ./.libs/libmaus2_stacktrace.so ./.libs/libmaus2_posix.so ./.libs/libmaus2_demangle.so ./.libs/libmaus2_arch.so ./.libs/libmaus2_simd_align_128.so ./.libs/libmaus2_simd_align_256.so -lz -fopenmp -pthread make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' Making all in test make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/test' make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_auto_test -a make -j4 check TESTSUITEFLAGS="-j4 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' Making check in src make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' Making check in test make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/test' make check-TESTS make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/test' make[4]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/test' PASS: testarraydecode.sh PASS: testarrayinput.sh PASS: testargparser.sh PASS: testautoarray2d.sh PASS: testbitbtree.sh PASS: testdnarank.sh PASS: testintervaltree.sh PASS: testnplself.sh PASS: testprotalign.sh PASS: testparasail.sh PASS: testAIO.sh PASS: testBitIO.sh PASS: testRank.sh ============================================================================ Testsuite summary for libmaus2 2.0.813 ============================================================================ # TOTAL: 13 # PASS: 13 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/test' make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/test' make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/test' make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/build/reproducible-path/libmaus2-2.0.813\+ds/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds' Making install in src make[2]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[3]: Entering directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' /usr/bin/mkdir -p '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libmaus2_arch.la libmaus2_posix.la libmaus2_demangle.la libmaus2_stacktrace.la libmaus2_exception.la libmaus2_autoarray.la libmaus2_parallel.la libmaus2.la libmaus2_simd_align_128.la libmaus2_simd_align_256.la '/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmaus2_arch.so.2.0.813 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_arch.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_arch.so.2.0.813 libmaus2_arch.so.2 || { rm -f libmaus2_arch.so.2 && ln -s libmaus2_arch.so.2.0.813 libmaus2_arch.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_arch.so.2.0.813 libmaus2_arch.so || { rm -f libmaus2_arch.so && ln -s libmaus2_arch.so.2.0.813 libmaus2_arch.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_arch.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_arch.la libtool: install: /usr/bin/install -c .libs/libmaus2_posix.so.2.0.813 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_posix.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_posix.so.2.0.813 libmaus2_posix.so.2 || { rm -f libmaus2_posix.so.2 && ln -s libmaus2_posix.so.2.0.813 libmaus2_posix.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_posix.so.2.0.813 libmaus2_posix.so || { rm -f libmaus2_posix.so && ln -s libmaus2_posix.so.2.0.813 libmaus2_posix.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_posix.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_posix.la libtool: install: /usr/bin/install -c .libs/libmaus2_demangle.so.2.0.813 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_demangle.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_demangle.so.2.0.813 libmaus2_demangle.so.2 || { rm -f libmaus2_demangle.so.2 && ln -s libmaus2_demangle.so.2.0.813 libmaus2_demangle.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_demangle.so.2.0.813 libmaus2_demangle.so || { rm -f libmaus2_demangle.so && ln -s libmaus2_demangle.so.2.0.813 libmaus2_demangle.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_demangle.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_demangle.la libtool: warning: relinking 'libmaus2_stacktrace.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink riscv64-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_stacktrace.la -rpath /usr/lib/riscv64-linux-gnu libmaus2/stacktrace/la-StackTrace.lo libmaus2/stacktrace/la-StackTraceBufferContainer.lo libmaus2_posix.la libmaus2_demangle.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: riscv64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-linux-gnu/16/crti.o /usr/lib/gcc/riscv64-linux-gnu/16/crtbeginS.o libmaus2/stacktrace/.libs/la-StackTrace.o libmaus2/stacktrace/.libs/la-StackTraceBufferContainer.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lmaus2_posix -lmaus2_demangle -lz -L/usr/lib/gcc/riscv64-linux-gnu/16 -L/lib/riscv64-linux-gnu -L/usr/lib -lstdc++ -lm -latomic_asneeded -lc -lgcc_s /usr/lib/gcc/riscv64-linux-gnu/16/crtendS.o /usr/lib/gcc/riscv64-linux-gnu/16/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_stacktrace.so.2 -o .libs/libmaus2_stacktrace.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_stacktrace.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_stacktrace.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so.2 || { rm -f libmaus2_stacktrace.so.2 && ln -s libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so || { rm -f libmaus2_stacktrace.so && ln -s libmaus2_stacktrace.so.2.0.813 libmaus2_stacktrace.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_stacktrace.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_stacktrace.la libtool: warning: relinking 'libmaus2_exception.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink riscv64-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_exception.la -rpath /usr/lib/riscv64-linux-gnu libmaus2/exception/la-LibMausException.lo libmaus2_stacktrace.la libmaus2_demangle.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: riscv64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-linux-gnu/16/crti.o /usr/lib/gcc/riscv64-linux-gnu/16/crtbeginS.o libmaus2/exception/.libs/la-LibMausException.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lmaus2_stacktrace -lmaus2_demangle -lz -L/usr/lib/gcc/riscv64-linux-gnu/16 -L/lib/riscv64-linux-gnu -L/usr/lib -lstdc++ -lm -latomic_asneeded -lc -lgcc_s /usr/lib/gcc/riscv64-linux-gnu/16/crtendS.o /usr/lib/gcc/riscv64-linux-gnu/16/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_exception.so.2 -o .libs/libmaus2_exception.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_exception.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_exception.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_exception.so.2.0.813 libmaus2_exception.so.2 || { rm -f libmaus2_exception.so.2 && ln -s libmaus2_exception.so.2.0.813 libmaus2_exception.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_exception.so.2.0.813 libmaus2_exception.so || { rm -f libmaus2_exception.so && ln -s libmaus2_exception.so.2.0.813 libmaus2_exception.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_exception.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_exception.la libtool: warning: relinking 'libmaus2_autoarray.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink riscv64-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_autoarray.la -rpath /usr/lib/riscv64-linux-gnu libmaus2/autoarray/la-AutoArray.lo libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: riscv64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-linux-gnu/16/crti.o /usr/lib/gcc/riscv64-linux-gnu/16/crtbeginS.o libmaus2/autoarray/.libs/la-AutoArray.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lmaus2_stacktrace -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc/riscv64-linux-gnu/16 -L/lib/riscv64-linux-gnu -L/usr/lib -lstdc++ -lm -latomic_asneeded -lc -lgcc_s /usr/lib/gcc/riscv64-linux-gnu/16/crtendS.o /usr/lib/gcc/riscv64-linux-gnu/16/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_autoarray.so.2 -o .libs/libmaus2_autoarray.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_autoarray.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_autoarray.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so.2 || { rm -f libmaus2_autoarray.so.2 && ln -s libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so || { rm -f libmaus2_autoarray.so && ln -s libmaus2_autoarray.so.2.0.813 libmaus2_autoarray.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_autoarray.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_autoarray.la libtool: warning: relinking 'libmaus2_parallel.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink riscv64-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2_parallel.la -rpath /usr/lib/riscv64-linux-gnu libmaus2/parallel/la-SimpleThreadWorkPackage.lo libmaus2/parallel/la-StdSemaphore.lo libmaus2/parallel/la-StdMutex.lo libmaus2/parallel/la-StdSpinLock.lo libmaus2/parallel/la-StaticInitialisation.lo libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: riscv64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-linux-gnu/16/crti.o /usr/lib/gcc/riscv64-linux-gnu/16/crtbeginS.o libmaus2/parallel/.libs/la-SimpleThreadWorkPackage.o libmaus2/parallel/.libs/la-StdSemaphore.o libmaus2/parallel/.libs/la-StdMutex.o libmaus2/parallel/.libs/la-StdSpinLock.o libmaus2/parallel/.libs/la-StaticInitialisation.o -L/lib -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc/riscv64-linux-gnu/16 -L/lib/riscv64-linux-gnu -L/usr/lib -lstdc++ -lm -latomic_asneeded -lc -lgcc_s /usr/lib/gcc/riscv64-linux-gnu/16/crtendS.o /usr/lib/gcc/riscv64-linux-gnu/16/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_parallel.so.2 -o .libs/libmaus2_parallel.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_parallel.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_parallel.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_parallel.so.2.0.813 libmaus2_parallel.so.2 || { rm -f libmaus2_parallel.so.2 && ln -s libmaus2_parallel.so.2.0.813 libmaus2_parallel.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_parallel.so.2.0.813 libmaus2_parallel.so || { rm -f libmaus2_parallel.so && ln -s libmaus2_parallel.so.2.0.813 libmaus2_parallel.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_parallel.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_parallel.la libtool: warning: relinking 'libmaus2.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink riscv64-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -L/lib -Wl,-z,relro -Wl,-z,now -o libmaus2.la -rpath /usr/lib/riscv64-linux-gnu libmaus2/la-StaticInitialization.lo libmaus2/bitio/la-CompactArray.lo libmaus2/rank/la-RankTable.lo libmaus2/rank/la-log2table.lo libmaus2/fastx/la-isFastQ.lo libmaus2/wavelet/la-toWaveletTreeBits.lo libmaus2/suffixsort/la-divsufsort.lo libmaus2/digest/la-md5.lo libmaus2/math/la-primes16.lo libmaus2/util/la-OutputFileNameTools.lo libmaus2/select/la-ESelectBase.lo libmaus2/bambam/la-CigarStringParser.lo libmaus2/fastx/la-Phred.lo libmaus2/lz/la-SnappyCompress.lo libmaus2/bambam/la-ReadEndsContainer.lo libmaus2/bambam/la-ReadEnds.lo libmaus2/huffman/la-IndexLoaderBase.lo libmaus2/bambam/la-BamAlignmentDecoderBase.lo libmaus2/bambam/la-StrCmpNum.lo libmaus2/huffman/la-KvInitResult.lo libmaus2/fm/la-MausFmToBwaConversion.lo libmaus2/util/la-TempFileNameGenerator.lo libmaus2/util/la-TempFileNameGeneratorState.lo libmaus2/util/la-ArgInfo.lo libmaus2/util/la-BitList.lo libmaus2/util/la-VarBitList.lo libmaus2/util/la-Concat.lo libmaus2/util/la-ConcatRequest.lo libmaus2/util/la-ConsoleColor.lo libmaus2/util/la-DynamicLoading.lo libmaus2/util/la-GetFileSize.lo libmaus2/util/la-Histogram.lo libmaus2/util/la-HistogramSet.lo libmaus2/util/la-IncreasingList.lo libmaus2/util/la-IntervalTree.lo libmaus2/util/la-GenericIntervalTree.lo libmaus2/util/la-LookupIntervalTree.lo libmaus2/digest/la-md5_interface.lo libmaus2/util/la-MemUsage.lo libmaus2/util/la-nstat.lo libmaus2/util/la-SaturatingCounter.lo libmaus2/util/la-StringSerialisation.lo libmaus2/util/la-SuccinctBorderArray.lo libmaus2/util/la-Terminal.lo libmaus2/util/la-OctetString.lo libmaus2/util/la-Utf8String.lo libmaus2/util/la-Utf8BlockIndexDecoder.lo libmaus2/util/la-Utf8BlockIndex.lo libmaus2/util/la-Utf8DecoderBuffer.lo libmaus2/util/la-Utf8DecoderWrapper.lo libmaus2/suffixtree/la-CompressedSuffixTree.lo libmaus2/bambam/la-AlignmentValidity.lo libmaus2/bambam/la-BamFlagBase.lo libmaus2/bambam/la-ReadGroup.lo libmaus2/bambam/la-DuplicationMetrics.lo libmaus2/bambam/la-BamDefaultAdapters.lo libmaus2/bambam/la-BamRange.lo libmaus2/bambam/la-BamIndexBinChunk.lo libmaus2/bambam/la-BamIndexLinearChunk.lo libmaus2/huffman/la-HuffmanTree.lo libmaus2/bambam/la-BamAlignmentDecoderInfo.lo libmaus2/lz/la-Lz4Base.lo libmaus2/lz/la-Lz4Compress.lo libmaus2/lz/la-Lz4DecoderBuffer.lo libmaus2/lz/la-lz4.lo libmaus2/fm/la-BidirectionalIndexInterval.lo libmaus2/fm/la-BidirectionalIndexIntervalSymbol.lo libmaus2/gamma/la-SparseGammaGapFileIndexDecoderEntry.lo libmaus2/fastx/la-FastALineParserLineInfo.lo libmaus2/fastx/la-FastAMatchTable.lo libmaus2/lcs/la-EditDistanceResult.lo libmaus2/fastx/la-FastABgzfIndexEntry.lo libmaus2/fastx/la-FastABgzfIndex.lo libmaus2/fastx/la-FastAIndexEntry.lo libmaus2/fastx/la-FastAIndex.lo libmaus2/hashing/la-Crc32.lo libmaus2/hashing/la-MurmurHash3.lo libmaus2/lcs/la-LocalBaseConstants.lo libmaus2/lcs/la-LocalEditDistanceResult.lo libmaus2/bambam/la-BamHeaderParserStateBase.lo libmaus2/bambam/la-GeneFlatFile.lo libmaus2/bambam/la-GeneFlatFileEntry.lo libmaus2/trie/la-SimpleTrie.lo libmaus2/bambam/la-BamStreamingMarkDuplicatesSupport.lo libmaus2/alignment/la-FactorMatchInfo.lo libmaus2/alignment/la-KmerInfo.lo libmaus2/bambam/la-SamInfoBase.lo libmaus2/digest/la-SHA1.lo libmaus2/digest/la-SHA2_224.lo libmaus2/digest/la-SHA2_256.lo libmaus2/digest/la-SHA2_384.lo libmaus2/digest/la-SHA2_512.lo libmaus2/digest/la-CRC32.lo libmaus2/digest/la-CRC32C_Core.lo libmaus2/digest/la-CRC32C.lo libmaus2/digest/la-CRC32_Core.lo libmaus2/bambam/parallel/la-ValidationFragment.lo libmaus2/bambam/parallel/la-GenericInputControlStreamInfo.lo libmaus2/fastx/la-NameInfoBase.lo libmaus2/bambam/parallel/la-RefIdInterval.lo libmaus2/fastx/la-RefPathToken.lo libmaus2/fastx/la-RefPathTokenVector.lo libmaus2/dazzler/db/la-FastaInfo.lo libmaus2/dazzler/db/la-IndexBase.lo libmaus2/dazzler/db/la-DatabaseFile.lo libmaus2/dazzler/db/la-Read.lo libmaus2/dazzler/align/la-Path.lo libmaus2/dazzler/align/la-Overlap.lo libmaus2/lcs/la-AlignmentStatistics.lo libmaus2/fastx/la-SingleWordDNABitBuffer.lo libmaus2/util/la-LongestIncreasingSubsequenceExtendedResult.lo libmaus2/lcs/la-AlignerFactory.lo libmaus2/lcs/la-BandedAlignerFactory.lo libmaus2/aio/la-InputStreamInstance.lo libmaus2/aio/la-OutputStreamInstance.lo libmaus2/aio/la-OutputStreamFactoryContainer.lo libmaus2/dazzler/align/la-TraceBlock.lo libmaus2/dazzler/align/la-ApproximateRun.lo libmaus2/suffixsort/la-BwtMergeBlockSortRequest.lo libmaus2/dazzler/align/la-OverlapMeta.lo libmaus2/dazzler/align/la-Tandem.lo libmaus2/dazzler/align/la-TandemVector.lo libmaus2/math/la-GmpInteger.lo libmaus2/math/la-GmpFloat.lo libmaus2/dazzler/align/la-TracePoint.lo libmaus2/lz/la-XzDecoder.lo libmaus2/util/la-ArgParser.lo libmaus2/fastx/la-DNAIndexMetaDataSequence.lo libmaus2/fastx/la-DNAIndexMetaData.lo libmaus2/bambam/la-PileVectorElement.lo libmaus2/bambam/la-PileQualityVectorElement.lo libmaus2/digest/la-SHA3_256.lo libmaus2/fastx/la-DNAIndexMetaDataBigBand.lo libmaus2/fastx/la-DNAIndexMetaDataBigBandBiDir.lo libmaus2/rank/la-DNARankBiDirRange.lo libmaus2/lcs/la-NNPTraceElement.lo libmaus2/lcs/la-NNPTraceContainer.lo libmaus2/lcs/la-NNPAlignResult.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeGapRequest.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSort.lo libmaus2/suffixsort/bwtb3m/la-BwtComputeSSA.lo libmaus2/fastx/la-FastAToCompact4BigBand.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortResult.lo libmaus2/lz/la-ZlibInterface.lo libmaus2/suffixsort/bwtb3m/la-BwtSelectSSA.lo libmaus2/aio/la-FileRemoval.lo libmaus2/rank/la-DNARankMEM.lo libmaus2/lcs/la-ChainAddQueueElement.lo libmaus2/lcs/la-Chain.lo libmaus2/lcs/la-ChainNode.lo libmaus2/lcs/la-ChainNodeInfo.lo libmaus2/lcs/la-ChainRemoveQueueElement.lo libmaus2/lcs/la-ChainSplayTreeNode.lo libmaus2/timing/la-RealTimeClock.lo libmaus2/aio/la-PosixFdOutputStreamFactory.lo libmaus2/dazzler/align/la-OverlapHeader.lo libmaus2/bambam/la-BamAlignment.lo libmaus2/suffixsort/bwtb3m/la-MergeStrategyMergeInput.lo libmaus2/aio/la-InputOutputStreamInstance.lo libmaus2/dazzler/align/la-OverlapInfo.lo libmaus2/dazzler/align/la-OverlapDataInterface.lo libmaus2/util/la-PathTools.lo libmaus2/aio/la-OFStreamOutputStreamFactory.lo libmaus2/aio/la-PosixFdInput.lo libmaus2/lz/la-BgzfDeflateHeaderFunctions.lo libmaus2/lz/la-BgzfDeflateZStreamBase.lo libmaus2/gtf/la-CDS.lo libmaus2/gtf/la-Exon.lo libmaus2/gtf/la-ExonInfo.lo libmaus2/gtf/la-ExonInterval.lo libmaus2/gtf/la-ExonSubInfo.lo libmaus2/protein/la-Blosum62.lo libmaus2/protein/la-CodonMapper.lo libmaus2/bambam/la-ChecksumsFactory.lo libmaus2/vcf/la-VCFSortEntry.lo libmaus2/network/la-CurlInitObject.lo libmaus2/network/la-CurlOutputBlock.lo libmaus2/network/la-CurlResponseAcceptor.lo libmaus2/network/la-HttpCurlResponseAcceptor.lo libmaus2/network/la-FtpCurlResponseAcceptor.lo libmaus2/network/la-CurlObject.lo libmaus2/network/la-CurlObjectReader.lo libmaus2/network/la-CurlObjectThreadCallable.lo libmaus2/network/la-CurlInputStreamBuffer.lo libmaus2/network/la-CurlInputStream.lo libmaus2/network/la-GetHostName.lo libmaus2/aio/la-SecrecyInputStreamFactory.lo libmaus2/aio/la-SecrecyOutputStreamFactory.lo libmaus2/bambam/la-Scram.lo libmaus2/bambam/parallel/la-ScramCramEncoding.lo libmaus2/parallel/threadpool/bgzf/la-BgzfDecompressContext.lo libmaus2/parallel/threadpool/bgzf/la-BgzfCompressContext.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaBase.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeIsaParallelBase.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeParallelGapFragMerge.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz432.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac32.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf832.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateByte64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateLz464.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePacTerm64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateCompact64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplatePac64.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeSortTemplateUtf864.lo libmaus2/suffixsort/bwtb3m/la-BwtMergeComputeSampledSA.lo -lz -lgmp -lnettle -lgpgme libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: riscv64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-linux-gnu/16/crti.o /usr/lib/gcc/riscv64-linux-gnu/16/crtbeginS.o libmaus2/.libs/la-StaticInitialization.o libmaus2/bitio/.libs/la-CompactArray.o libmaus2/rank/.libs/la-RankTable.o libmaus2/rank/.libs/la-log2table.o libmaus2/fastx/.libs/la-isFastQ.o libmaus2/wavelet/.libs/la-toWaveletTreeBits.o libmaus2/suffixsort/.libs/la-divsufsort.o libmaus2/digest/.libs/la-md5.o libmaus2/math/.libs/la-primes16.o libmaus2/util/.libs/la-OutputFileNameTools.o libmaus2/select/.libs/la-ESelectBase.o libmaus2/bambam/.libs/la-CigarStringParser.o libmaus2/fastx/.libs/la-Phred.o libmaus2/lz/.libs/la-SnappyCompress.o libmaus2/bambam/.libs/la-ReadEndsContainer.o libmaus2/bambam/.libs/la-ReadEnds.o libmaus2/huffman/.libs/la-IndexLoaderBase.o libmaus2/bambam/.libs/la-BamAlignmentDecoderBase.o libmaus2/bambam/.libs/la-StrCmpNum.o libmaus2/huffman/.libs/la-KvInitResult.o libmaus2/fm/.libs/la-MausFmToBwaConversion.o libmaus2/util/.libs/la-TempFileNameGenerator.o libmaus2/util/.libs/la-TempFileNameGeneratorState.o libmaus2/util/.libs/la-ArgInfo.o libmaus2/util/.libs/la-BitList.o libmaus2/util/.libs/la-VarBitList.o libmaus2/util/.libs/la-Concat.o libmaus2/util/.libs/la-ConcatRequest.o libmaus2/util/.libs/la-ConsoleColor.o libmaus2/util/.libs/la-DynamicLoading.o libmaus2/util/.libs/la-GetFileSize.o libmaus2/util/.libs/la-Histogram.o libmaus2/util/.libs/la-HistogramSet.o libmaus2/util/.libs/la-IncreasingList.o libmaus2/util/.libs/la-IntervalTree.o libmaus2/util/.libs/la-GenericIntervalTree.o libmaus2/util/.libs/la-LookupIntervalTree.o libmaus2/digest/.libs/la-md5_interface.o libmaus2/util/.libs/la-MemUsage.o libmaus2/util/.libs/la-nstat.o libmaus2/util/.libs/la-SaturatingCounter.o libmaus2/util/.libs/la-StringSerialisation.o libmaus2/util/.libs/la-SuccinctBorderArray.o libmaus2/util/.libs/la-Terminal.o libmaus2/util/.libs/la-OctetString.o libmaus2/util/.libs/la-Utf8String.o libmaus2/util/.libs/la-Utf8BlockIndexDecoder.o libmaus2/util/.libs/la-Utf8BlockIndex.o libmaus2/util/.libs/la-Utf8DecoderBuffer.o libmaus2/util/.libs/la-Utf8DecoderWrapper.o libmaus2/suffixtree/.libs/la-CompressedSuffixTree.o libmaus2/bambam/.libs/la-AlignmentValidity.o libmaus2/bambam/.libs/la-BamFlagBase.o libmaus2/bambam/.libs/la-ReadGroup.o libmaus2/bambam/.libs/la-DuplicationMetrics.o libmaus2/bambam/.libs/la-BamDefaultAdapters.o libmaus2/bambam/.libs/la-BamRange.o libmaus2/bambam/.libs/la-BamIndexBinChunk.o libmaus2/bambam/.libs/la-BamIndexLinearChunk.o libmaus2/huffman/.libs/la-HuffmanTree.o libmaus2/bambam/.libs/la-BamAlignmentDecoderInfo.o libmaus2/lz/.libs/la-Lz4Base.o libmaus2/lz/.libs/la-Lz4Compress.o libmaus2/lz/.libs/la-Lz4DecoderBuffer.o libmaus2/lz/.libs/la-lz4.o libmaus2/fm/.libs/la-BidirectionalIndexInterval.o libmaus2/fm/.libs/la-BidirectionalIndexIntervalSymbol.o libmaus2/gamma/.libs/la-SparseGammaGapFileIndexDecoderEntry.o libmaus2/fastx/.libs/la-FastALineParserLineInfo.o libmaus2/fastx/.libs/la-FastAMatchTable.o libmaus2/lcs/.libs/la-EditDistanceResult.o libmaus2/fastx/.libs/la-FastABgzfIndexEntry.o libmaus2/fastx/.libs/la-FastABgzfIndex.o libmaus2/fastx/.libs/la-FastAIndexEntry.o libmaus2/fastx/.libs/la-FastAIndex.o libmaus2/hashing/.libs/la-Crc32.o libmaus2/hashing/.libs/la-MurmurHash3.o libmaus2/lcs/.libs/la-LocalBaseConstants.o libmaus2/lcs/.libs/la-LocalEditDistanceResult.o libmaus2/bambam/.libs/la-BamHeaderParserStateBase.o libmaus2/bambam/.libs/la-GeneFlatFile.o libmaus2/bambam/.libs/la-GeneFlatFileEntry.o libmaus2/trie/.libs/la-SimpleTrie.o libmaus2/bambam/.libs/la-BamStreamingMarkDuplicatesSupport.o libmaus2/alignment/.libs/la-FactorMatchInfo.o libmaus2/alignment/.libs/la-KmerInfo.o libmaus2/bambam/.libs/la-SamInfoBase.o libmaus2/digest/.libs/la-SHA1.o libmaus2/digest/.libs/la-SHA2_224.o libmaus2/digest/.libs/la-SHA2_256.o libmaus2/digest/.libs/la-SHA2_384.o libmaus2/digest/.libs/la-SHA2_512.o libmaus2/digest/.libs/la-CRC32.o libmaus2/digest/.libs/la-CRC32C_Core.o libmaus2/digest/.libs/la-CRC32C.o libmaus2/digest/.libs/la-CRC32_Core.o libmaus2/bambam/parallel/.libs/la-ValidationFragment.o libmaus2/bambam/parallel/.libs/la-GenericInputControlStreamInfo.o libmaus2/fastx/.libs/la-NameInfoBase.o libmaus2/bambam/parallel/.libs/la-RefIdInterval.o libmaus2/fastx/.libs/la-RefPathToken.o libmaus2/fastx/.libs/la-RefPathTokenVector.o libmaus2/dazzler/db/.libs/la-FastaInfo.o libmaus2/dazzler/db/.libs/la-IndexBase.o libmaus2/dazzler/db/.libs/la-DatabaseFile.o libmaus2/dazzler/db/.libs/la-Read.o libmaus2/dazzler/align/.libs/la-Path.o libmaus2/dazzler/align/.libs/la-Overlap.o libmaus2/lcs/.libs/la-AlignmentStatistics.o libmaus2/fastx/.libs/la-SingleWordDNABitBuffer.o libmaus2/util/.libs/la-LongestIncreasingSubsequenceExtendedResult.o libmaus2/lcs/.libs/la-AlignerFactory.o libmaus2/lcs/.libs/la-BandedAlignerFactory.o libmaus2/aio/.libs/la-InputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamInstance.o libmaus2/aio/.libs/la-OutputStreamFactoryContainer.o libmaus2/dazzler/align/.libs/la-TraceBlock.o libmaus2/dazzler/align/.libs/la-ApproximateRun.o libmaus2/suffixsort/.libs/la-BwtMergeBlockSortRequest.o libmaus2/dazzler/align/.libs/la-OverlapMeta.o libmaus2/dazzler/align/.libs/la-Tandem.o libmaus2/dazzler/align/.libs/la-TandemVector.o libmaus2/math/.libs/la-GmpInteger.o libmaus2/math/.libs/la-GmpFloat.o libmaus2/dazzler/align/.libs/la-TracePoint.o libmaus2/lz/.libs/la-XzDecoder.o libmaus2/util/.libs/la-ArgParser.o libmaus2/fastx/.libs/la-DNAIndexMetaDataSequence.o libmaus2/fastx/.libs/la-DNAIndexMetaData.o libmaus2/bambam/.libs/la-PileVectorElement.o libmaus2/bambam/.libs/la-PileQualityVectorElement.o libmaus2/digest/.libs/la-SHA3_256.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBand.o libmaus2/fastx/.libs/la-DNAIndexMetaDataBigBandBiDir.o libmaus2/rank/.libs/la-DNARankBiDirRange.o libmaus2/lcs/.libs/la-NNPTraceElement.o libmaus2/lcs/.libs/la-NNPTraceContainer.o libmaus2/lcs/.libs/la-NNPAlignResult.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeGapRequest.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSort.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtComputeSSA.o libmaus2/fastx/.libs/la-FastAToCompact4BigBand.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortResult.o libmaus2/lz/.libs/la-ZlibInterface.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtSelectSSA.o libmaus2/aio/.libs/la-FileRemoval.o libmaus2/rank/.libs/la-DNARankMEM.o libmaus2/lcs/.libs/la-ChainAddQueueElement.o libmaus2/lcs/.libs/la-Chain.o libmaus2/lcs/.libs/la-ChainNode.o libmaus2/lcs/.libs/la-ChainNodeInfo.o libmaus2/lcs/.libs/la-ChainRemoveQueueElement.o libmaus2/lcs/.libs/la-ChainSplayTreeNode.o libmaus2/timing/.libs/la-RealTimeClock.o libmaus2/aio/.libs/la-PosixFdOutputStreamFactory.o libmaus2/dazzler/align/.libs/la-OverlapHeader.o libmaus2/bambam/.libs/la-BamAlignment.o libmaus2/suffixsort/bwtb3m/.libs/la-MergeStrategyMergeInput.o libmaus2/aio/.libs/la-InputOutputStreamInstance.o libmaus2/dazzler/align/.libs/la-OverlapInfo.o libmaus2/dazzler/align/.libs/la-OverlapDataInterface.o libmaus2/util/.libs/la-PathTools.o libmaus2/aio/.libs/la-OFStreamOutputStreamFactory.o libmaus2/aio/.libs/la-PosixFdInput.o libmaus2/lz/.libs/la-BgzfDeflateHeaderFunctions.o libmaus2/lz/.libs/la-BgzfDeflateZStreamBase.o libmaus2/gtf/.libs/la-CDS.o libmaus2/gtf/.libs/la-Exon.o libmaus2/gtf/.libs/la-ExonInfo.o libmaus2/gtf/.libs/la-ExonInterval.o libmaus2/gtf/.libs/la-ExonSubInfo.o libmaus2/protein/.libs/la-Blosum62.o libmaus2/protein/.libs/la-CodonMapper.o libmaus2/bambam/.libs/la-ChecksumsFactory.o libmaus2/vcf/.libs/la-VCFSortEntry.o libmaus2/network/.libs/la-CurlInitObject.o libmaus2/network/.libs/la-CurlOutputBlock.o libmaus2/network/.libs/la-CurlResponseAcceptor.o libmaus2/network/.libs/la-HttpCurlResponseAcceptor.o libmaus2/network/.libs/la-FtpCurlResponseAcceptor.o libmaus2/network/.libs/la-CurlObject.o libmaus2/network/.libs/la-CurlObjectReader.o libmaus2/network/.libs/la-CurlObjectThreadCallable.o libmaus2/network/.libs/la-CurlInputStreamBuffer.o libmaus2/network/.libs/la-CurlInputStream.o libmaus2/network/.libs/la-GetHostName.o libmaus2/aio/.libs/la-SecrecyInputStreamFactory.o libmaus2/aio/.libs/la-SecrecyOutputStreamFactory.o libmaus2/bambam/.libs/la-Scram.o libmaus2/bambam/parallel/.libs/la-ScramCramEncoding.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfDecompressContext.o libmaus2/parallel/threadpool/bgzf/.libs/la-BgzfCompressContext.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeIsaParallelBase.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeParallelGapFragMerge.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz432.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac32.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf832.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateByte64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateLz464.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePacTerm64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateCompact64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplatePac64.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeSortTemplateUtf864.o libmaus2/suffixsort/bwtb3m/.libs/la-BwtMergeComputeSampledSA.o -L/lib -lgmp -lnettle -lgpgme -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc/riscv64-linux-gnu/16 -L/lib/riscv64-linux-gnu -L/usr/lib -lstdc++ -lm -latomic_asneeded -lc -lgcc_s /usr/lib/gcc/riscv64-linux-gnu/16/crtendS.o /usr/lib/gcc/riscv64-linux-gnu/16/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2.so.2 -o .libs/libmaus2.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2.so.2.0.813 libmaus2.so.2 || { rm -f libmaus2.so.2 && ln -s libmaus2.so.2.0.813 libmaus2.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2.so.2.0.813 libmaus2.so || { rm -f libmaus2.so && ln -s libmaus2.so.2.0.813 libmaus2.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2.la libtool: warning: relinking 'libmaus2_simd_align_128.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink riscv64-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_128.la -rpath /usr/lib/riscv64-linux-gnu libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.lo libmaus2/lcs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: riscv64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-linux-gnu/16/crti.o /usr/lib/gcc/riscv64-linux-gnu/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentConstants128.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86BandedGlobalAlignmentX128_16.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_8.o libmaus2/lcs/.libs/simd_align_128_la-SimdX86GlobalAlignmentX128_16.o -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc/riscv64-linux-gnu/16 -L/lib/riscv64-linux-gnu -L/lib -L/usr/lib -lstdc++ -lm -latomic_asneeded -lc -lgcc_s /usr/lib/gcc/riscv64-linux-gnu/16/crtendS.o /usr/lib/gcc/riscv64-linux-gnu/16/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_128.so.2 -o .libs/libmaus2_simd_align_128.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_simd_align_128.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so.2 || { rm -f libmaus2_simd_align_128.so.2 && ln -s libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so || { rm -f libmaus2_simd_align_128.so && ln -s libmaus2_simd_align_128.so.2.0.813 libmaus2_simd_align_128.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_128.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_simd_align_128.la libtool: warning: relinking 'libmaus2_simd_align_256.la' libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/src; /bin/bash "/build/reproducible-path/libmaus2-2.0.813+ds/libtool" --tag CXX --mode=relink riscv64-linux-gnu-g++ -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fopenmp -Wl,-z,relro -Wl,-z,now -version-info 2:813:0 -Wl,-z,relro -Wl,-z,now -o libmaus2_simd_align_256.la -rpath /usr/lib/riscv64-linux-gnu libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo libmaus2_parallel.la libmaus2_autoarray.la libmaus2_exception.la libmaus2_stacktrace.la libmaus2_posix.la libmaus2_demangle.la libmaus2_arch.la -lz -inst-prefix-dir /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp) libtool: relink: riscv64-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/riscv64-linux-gnu/16/crti.o /usr/lib/gcc/riscv64-linux-gnu/16/crtbeginS.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentConstants256.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o -L/build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lmaus2_parallel -lmaus2_autoarray -lmaus2_exception -lmaus2_stacktrace -lmaus2_posix -lmaus2_demangle -lmaus2_arch -lz -L/usr/lib/gcc/riscv64-linux-gnu/16 -L/lib/riscv64-linux-gnu -L/lib -L/usr/lib -lstdc++ -lm -latomic_asneeded -lc -lgcc_s /usr/lib/gcc/riscv64-linux-gnu/16/crtendS.o /usr/lib/gcc/riscv64-linux-gnu/16/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/libmaus2-2.0.813+ds=. -fstack-protector-strong -Werror=format-security -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -fopenmp -Wl,-soname -Wl,libmaus2_simd_align_256.so.2 -o .libs/libmaus2_simd_align_256.so.2.0.813 libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.so.2.0.813T /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_simd_align_256.so.2.0.813 libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so.2 || { rm -f libmaus2_simd_align_256.so.2 && ln -s libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so.2; }; }) libtool: install: (cd /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu && { ln -s -f libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so || { rm -f libmaus2_simd_align_256.so && ln -s libmaus2_simd_align_256.so.2.0.813 libmaus2_simd_align_256.so; }; }) libtool: install: /usr/bin/install -c .libs/libmaus2_simd_align_256.lai /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_simd_align_256.la libtool: install: /usr/bin/install -c .libs/libmaus2_arch.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_arch.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_arch.a libtool: install: ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_arch.a libtool: install: /usr/bin/install -c .libs/libmaus2_posix.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_posix.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_posix.a libtool: install: ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_posix.a libtool: install: /usr/bin/install -c .libs/libmaus2_demangle.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_demangle.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_demangle.a libtool: install: ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_demangle.a libtool: install: /usr/bin/install -c .libs/libmaus2_stacktrace.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_stacktrace.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_stacktrace.a libtool: install: ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_stacktrace.a libtool: install: /usr/bin/install -c .libs/libmaus2_exception.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_exception.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_exception.a libtool: install: ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_exception.a libtool: install: /usr/bin/install -c .libs/libmaus2_autoarray.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_autoarray.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_autoarray.a libtool: install: ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_autoarray.a libtool: install: /usr/bin/install -c .libs/libmaus2_parallel.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_parallel.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_parallel.a libtool: install: ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2_parallel.a libtool: install: /usr/bin/install -c .libs/libmaus2.a /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2.a libtool: install: chmod 644 /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2.a libtool: install: ranlib /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2.a ranlib: /build/reproducible-path/libmaus2-2.0.813+ds/debian/tmp/usr/lib/riscv64-linux-gnu/libmaus2.a: error reading la-BwtMergeSortTemplateUtf832.o: No space left on device make[3]: *** [Makefile:6097: install-libLTLIBRARIES] Error 1 make[3]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[2]: *** [Makefile:13827: install-am] Error 2 make[2]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds/src' make[1]: *** [Makefile:687: install-recursive] Error 1 make[1]: Leaving directory '/build/reproducible-path/libmaus2-2.0.813+ds' dh_auto_install: error: make -j1 install DESTDIR=/build/reproducible-path/libmaus2-2.0.813\+ds/debian/tmp AM_UPDATE_INFO_DIR=no returned exit code 2 make: *** [debian/rules:16: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess failed with exit status 2 -------------------------------------------------------------------------------- Build finished at 2026-08-07T12:24:33Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup Fri, 07 Aug 2026 12:24:37 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 2) +------------------------------------------------------------------------------+ | Summary Fri, 07 Aug 2026 12:24:48 +0000 | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 12926408 Build-Time: 13044 Distribution: unstable Fail-Stage: build Host Architecture: riscv64 Install-Time: 17 Job: /srv/rebuilderd/tmp/rebuilderdzjNKHo/inputs/libmaus2_2.0.813+ds-6.dsc Machine Architecture: riscv64 Package: libmaus2 Package-Time: 13144 Source-Version: 2.0.813+ds-6 Space: 12926408 Status: attempted Version: 2.0.813+ds-6 -------------------------------------------------------------------------------- Finished at 2026-08-07T12:24:33Z Build needed 03:39:04, 12926408k disk space E: Build failure (dpkg-buildpackage died with exit 2) sbuild failed