=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdFbzz7K/inputs/bedops_2.4.42+dfsg-1_riscv64.buildinfo Source: bedops Version: 2.4.42+dfsg-1 rebuilderd-worker node: riscv64-01 +------------------------------------------------------------------------------+ | Downloading sources Fri, 10 Oct 2025 18:31:57 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [55.8 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [53.8 kB] Get:6 https://deb.debian.org/debian forky InRelease [147 kB] Get:7 https://deb.debian.org/debian sid InRelease [207 kB] Get:8 https://deb.debian.org/debian experimental InRelease [101 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6536 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [56.7 kB] Get:12 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:13 https://deb.debian.org/debian trixie-proposed-updates/main Sources [22.3 kB] Get:14 https://deb.debian.org/debian trixie-backports/main Sources [56.8 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [1052 B] Get:16 https://deb.debian.org/debian forky/non-free-firmware Sources [7128 B] Get:17 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:18 https://deb.debian.org/debian sid/non-free-firmware Sources [9100 B] Get:19 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:20 https://deb.debian.org/debian experimental/main Sources [366 kB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2572 B] Fetched 33.6 MB in 32s (1052 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/b/bedops/bedops_2.4.42%2bdfsg-1.dsc' bedops_2.4.42+dfsg-1.dsc 2232 SHA256:d00ad438db9582d69ea36e8bf3142ea8eaa792c46e52cd3119af908397660090 'https://deb.debian.org/debian/pool/main/b/bedops/bedops_2.4.42%2bdfsg.orig.tar.xz' bedops_2.4.42+dfsg.orig.tar.xz 13467276 SHA256:0f9c01b7bb95590ea79283d6083b3908450e269ef486e29e2548a4f58d6e6ff4 'https://deb.debian.org/debian/pool/main/b/bedops/bedops_2.4.42%2bdfsg-1.debian.tar.xz' bedops_2.4.42+dfsg-1.debian.tar.xz 10812 SHA256:48dd780c779e4886594f7dae05c57c53f4bdb60ab87e4bbfbf9c9d37f8fa1156 0f9c01b7bb95590ea79283d6083b3908450e269ef486e29e2548a4f58d6e6ff4 bedops_2.4.42+dfsg.orig.tar.xz 48dd780c779e4886594f7dae05c57c53f4bdb60ab87e4bbfbf9c9d37f8fa1156 bedops_2.4.42+dfsg-1.debian.tar.xz d00ad438db9582d69ea36e8bf3142ea8eaa792c46e52cd3119af908397660090 bedops_2.4.42+dfsg-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 10 Oct 2025 18:32:35 +0000 | +------------------------------------------------------------------------------+ Rebuilding bedops=2.4.42+dfsg-1 in /srv/rebuilderd/tmp/rebuilderdFbzz7K/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdFbzz7K/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdFbzz7K/inputs/bedops_2.4.42+dfsg-1_riscv64.buildinfo /srv/rebuilderd/tmp/rebuilderdFbzz7K/inputs/bedops_2.4.42+dfsg-1_riscv64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/bedops-2.4.42+dfsg I: verifying dsc... successful! Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid InRelease [216 kB] Get:2 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 Packages [9793 kB] Fetched 10.0 MB in 7s (1426 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20250824T022542Z/dists/sid/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libgdbm-compat4t64 riscv64 1.24-2 [50.5 kB] Fetched 50.5 kB in 0s (854 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpslah4sas/libgdbm-compat4t64_1.24-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (368 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw0qp3yiw/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 perl riscv64 5.40.1-6 [267 kB] Fetched 267 kB in 0s (3782 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuglqfdi9/perl_5.40.1-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 gettext riscv64 0.23.1-2+b1 [1682 kB] Fetched 1682 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplh5m5v8o/gettext_0.23.1-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libmd0 riscv64 1.1.0-2+b1 [37.6 kB] Fetched 37.6 kB in 0s (633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiaoogu4u/libmd0_1.1.0-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libunistring5 riscv64 1.3-2 [474 kB] Fetched 474 kB in 0s (5761 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6idnin6m/libunistring5_1.3-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 dpkg riscv64 1.22.21 [1542 kB] Fetched 1542 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu3i0d4vy/dpkg_1.22.21_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libaudit-common all 1:4.0.5-1 [13.5 kB] Fetched 13.5 kB in 0s (231 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.0.5-1_all.deb' to '/srv/rebuilderd/tmp/tmpuxj3prym/libaudit-common_4.0.5-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-9 [716 kB] Fetched 716 kB in 0s (7423 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbucw94y2/libdb5.3t64_5.3.28+dfsg2-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libisl23 riscv64 0.27-1 [664 kB] Fetched 664 kB in 0s (7030 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu2sau63e/libisl23_0.27-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libubsan1 riscv64 15.2.0-1 [1178 kB] Fetched 1178 kB in 0s (9551 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqel2lv1t/libubsan1_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libc-bin riscv64 2.41-12 [606 kB] Fetched 606 kB in 0s (6742 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ydihcou/libc-bin_2.41-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Fetched 85.7 kB in 0s (1065 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp__48pljf/zlib1g_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 linux-libc-dev all 6.12.38-1 [2627 kB] Fetched 2627 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptq0_pxta/linux-libc-dev_6.12.38-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libcc1-0 riscv64 15.2.0-1 [39.9 kB] Fetched 39.9 kB in 0s (650 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeqi8azz5/libcc1-0_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libsmartcols1 riscv64 2.41.1-1 [155 kB] Fetched 155 kB in 0s (2324 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfcz51ayp/libsmartcols1_2.41.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 tcsh riscv64 6.24.13-2 [467 kB] Fetched 467 kB in 3s (143 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd79wpm4i/tcsh_6.24.13-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 file riscv64 1:5.46-5 [43.4 kB] Fetched 43.4 kB in 0s (742 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmp118v8bgg/file_5.46-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libasan8 riscv64 15.2.0-1 [2938 kB] Fetched 2938 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxsj_nqg7/libasan8_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libctf0 riscv64 2.45-4 [97.0 kB] Fetched 97.0 kB in 0s (1565 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnb35e9u5/libctf0_2.45-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 m4 riscv64 1.4.19-8 [296 kB] Fetched 296 kB in 0s (3936 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfce8s6s8/m4_1.4.19-8_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 grep riscv64 3.11-4 [430 kB] Fetched 430 kB in 0s (5160 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgt_5sxpr/grep_3.11-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libc6 riscv64 2.41-12 [2472 kB] Fetched 2472 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnuwihawu/libc6_2.41-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 bash riscv64 5.2.37-2+b5 [1505 kB] Fetched 1505 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnnga91iy/bash_5.2.37-2+b5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (997 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnwxmkd8v/autotools-dev_20240727.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libitm1 riscv64 15.2.0-1 [25.4 kB] Fetched 25.4 kB in 0s (441 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp06smca4r/libitm1_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libcrypt1 riscv64 1:4.4.38-1 [106 kB] Fetched 106 kB in 0s (1681 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.4.38-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp0tzcfft6/libcrypt1_4.4.38-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (1662 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpheahh9h_/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libelf1t64 riscv64 0.192-4 [194 kB] Fetched 194 kB in 0s (2877 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsq4rgmc8/libelf1t64_0.192-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 tar riscv64 1.35+dfsg-3.1 [822 kB] Fetched 822 kB in 0s (7978 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_c1rrf_e/tar_1.35+dfsg-3.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (6945 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp41iizqpj/libdpkg-perl_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 debhelper all 13.25 [937 kB] Fetched 937 kB in 0s (8624 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmhw0ebba/debhelper_13.25_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libsqlite3-0 riscv64 3.46.1-7 [907 kB] Fetched 907 kB in 0s (8486 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5xzqroxa/libsqlite3-0_3.46.1-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 groff-base riscv64 1.23.0-9 [1163 kB] Fetched 1163 kB in 0s (9347 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqtt7ida1/groff-base_1.23.0-9_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libtsan2 riscv64 15.2.0-1 [2653 kB] Fetched 2653 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9qiqdy3b/libtsan2_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 sysvinit-utils riscv64 3.14-4 [33.7 kB] Fetched 33.7 kB in 0s (577 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr6c727dm/sysvinit-utils_3.14-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 gcc-riscv64-linux-gnu riscv64 4:14.2.0-1 [1432 B] Fetched 1432 B in 0s (25.8 kB/s) dpkg-name: info: moved 'gcc-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpn_ycw3go/gcc-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libgomp1 riscv64 15.2.0-1 [132 kB] Fetched 132 kB in 0s (2091 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcwez0gw_/libgomp1_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libbinutils riscv64 2.45-4 [525 kB] Fetched 525 kB in 0s (6099 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpigef777x/libbinutils_2.45-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libpcre2-8-0 riscv64 10.45-1 [300 kB] Fetched 300 kB in 0s (3969 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa5j6905w/libpcre2-8-0_10.45-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 cpp-riscv64-linux-gnu riscv64 4:14.2.0-1 [4832 B] Fetched 4832 B in 0s (86.7 kB/s) dpkg-name: info: moved 'cpp-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpkgxqv4bg/cpp-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 cpp-14 riscv64 14.3.0-5 [1276 B] Fetched 1276 B in 0s (23.1 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprc9b0b6b/cpp-14_14.3.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libbz2-dev riscv64 1.0.8-6 [69.9 kB] Fetched 69.9 kB in 0s (1158 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_gjudgfu/libbz2-dev_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (1940 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu3kn6yzg/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libc6-dev riscv64 2.41-12 [3127 kB] Fetched 3127 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpasldow35/libc6-dev_2.41-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libcap-ng0 riscv64 0.8.5-4+b1 [17.2 kB] Fetched 17.2 kB in 0s (292 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr5iyvvem/libcap-ng0_0.8.5-4+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libbz2-1.0 riscv64 1.0.8-6 [40.3 kB] Fetched 40.3 kB in 0s (698 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzyb5e0dz/libbz2-1.0_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libdebconfclient0 riscv64 0.280 [10.5 kB] Fetched 10.5 kB in 0s (177 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq1_rgz59/libdebconfclient0_0.280_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 binutils-riscv64-linux-gnu riscv64 2.45-4 [883 kB] Fetched 883 kB in 0s (8332 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbrp1dhn7/binutils-riscv64-linux-gnu_2.45-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 diffutils riscv64 1:3.10-4 [387 kB] Fetched 387 kB in 0s (4925 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.10-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpxz36sfnb/diffutils_3.10-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 gcc riscv64 4:14.2.0-1 [5132 B] Fetched 5132 B in 0s (90.7 kB/s) dpkg-name: info: moved 'gcc_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpvfxk4m1j/gcc_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 gettext-base riscv64 0.23.1-2+b1 [243 kB] Fetched 243 kB in 0s (3438 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7ytc2sge/gettext-base_0.23.1-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libssl3t64 riscv64 3.5.2-1 [2222 kB] Fetched 2222 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbeouymj_/libssl3t64_3.5.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libmount1 riscv64 2.41.1-1 [226 kB] Fetched 226 kB in 0s (3273 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphew8zrna/libmount1_2.41.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 rpcsvc-proto riscv64 1.4.3-1+b2 [62.3 kB] Fetched 62.3 kB in 0s (1020 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn55o11ov/rpcsvc-proto_1.4.3-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 binutils riscv64 2.45-4 [267 kB] Fetched 267 kB in 0s (3770 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0n6idhkf/binutils_2.45-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libuchardet0 riscv64 0.0.8-1+b2 [68.8 kB] Fetched 68.8 kB in 0s (1156 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp4fgotja/libuchardet0_0.0.8-1+b2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libcap2 riscv64 1:2.75-10+b1 [29.3 kB] Fetched 29.3 kB in 0s (486 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp2tg1f6_t/libcap2_2.75-10+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 liblastlog2-2 riscv64 2.41.1-1 [28.5 kB] Fetched 28.5 kB in 0s (456 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmposhsrpw3/liblastlog2-2_2.41.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (3489 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ucgyn52/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libc-dev-bin riscv64 2.41-12 [57.4 kB] Fetched 57.4 kB in 0s (886 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_y07ekru/libc-dev-bin_2.41-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 mawk riscv64 1.3.4.20250131-1 [142 kB] Fetched 142 kB in 0s (2209 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpveg54ck0/mawk_1.3.4.20250131-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 g++ riscv64 4:14.2.0-1 [1328 B] Fetched 1328 B in 0s (23.6 kB/s) dpkg-name: info: moved 'g++_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpfcz4ikqj/g++_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 help2man riscv64 1.49.3+b1 [198 kB] Fetched 198 kB in 0s (2749 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnp0rw5nq/help2man_1.49.3+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 dash riscv64 0.5.12-12 [101 kB] Fetched 101 kB in 0s (1640 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0vqemo4i/dash_0.5.12-12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libgcc-s1 riscv64 15.2.0-1 [61.5 kB] Fetched 61.5 kB in 0s (1043 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpykiipfxq/libgcc-s1_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libtinfo6 riscv64 6.5+20250216-2 [347 kB] Fetched 347 kB in 0s (4614 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu0blji7q/libtinfo6_6.5+20250216-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 g++-14-riscv64-linux-gnu riscv64 14.3.0-5 [15.1 MB] Fetched 15.1 MB in 1s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbenvxngh/g++-14-riscv64-linux-gnu_14.3.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libdebhelper-perl all 13.25 [91.6 kB] Fetched 91.6 kB in 0s (1499 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_pe0i0rb/libdebhelper-perl_13.25_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libudev1 riscv64 258~rc2-2 [158 kB] Fetched 158 kB in 0s (2450 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoqxrpt8d/libudev1_258~rc2-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libstdc++6 riscv64 15.2.0-1 [714 kB] Fetched 714 kB in 0s (7452 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpis2w271p/libstdc++6_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 liblzma5 riscv64 5.8.1-1 [313 kB] Fetched 313 kB in 0s (4257 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpel9uf2c5/liblzma5_5.8.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 automake all 1:1.17-4 [862 kB] Fetched 862 kB in 0s (8290 kB/s) dpkg-name: info: moved 'automake_1%3a1.17-4_all.deb' to '/srv/rebuilderd/tmp/tmpoexal3hb/automake_1.17-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 gcc-14-riscv64-linux-gnu riscv64 14.3.0-5 [27.3 MB] Fetched 27.3 MB in 2s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6rjuxjc0/gcc-14-riscv64-linux-gnu_14.3.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-3 [558 kB] Fetched 558 kB in 0s (6367 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmp1nrf0jyi/libgmp10_6.3.0+dfsg-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (457 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7lv886l1/sensible-utils_0.0.26_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 base-passwd riscv64 3.6.7 [53.8 kB] Fetched 53.8 kB in 0s (916 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprjjkvdgx/base-passwd_3.6.7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libuuid1 riscv64 2.41.1-1 [39.9 kB] Fetched 39.9 kB in 0s (683 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl_mz7x4r/libuuid1_2.41.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 cpp-14-riscv64-linux-gnu riscv64 14.3.0-5 [14.0 MB] Fetched 14.0 MB in 1s (16.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7z9nb2v/cpp-14-riscv64-linux-gnu_14.3.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libsystemd0 riscv64 258~rc2-2 [483 kB] Fetched 483 kB in 0s (5776 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy308onlr/libsystemd0_258~rc2-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 bzip2 riscv64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (675 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp1fwexwq/bzip2_1.0.8-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libctf-nobfd0 riscv64 2.45-4 [164 kB] Fetched 164 kB in 0s (2510 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfbiemquj/libctf-nobfd0_2.45-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 g++-14 riscv64 14.3.0-5 [28.2 kB] Fetched 28.2 kB in 0s (483 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq4hxanse/g++-14_14.3.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libjansson-dev riscv64 2.14-2+b3 [87.6 kB] Fetched 87.6 kB in 0s (1443 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6b6lzib9/libjansson-dev_2.14-2+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 perl-base riscv64 5.40.1-6 [1662 kB] Fetched 1662 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprar0p6z_/perl-base_5.40.1-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libsframe2 riscv64 2.45-4 [80.3 kB] Fetched 80.3 kB in 0s (1303 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxr14d3fc/libsframe2_2.45-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 openssl-provider-legacy riscv64 3.5.2-1 [308 kB] Fetched 308 kB in 0s (4092 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp49mnfwkc/openssl-provider-legacy_3.5.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libmagic-mgc riscv64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (4418 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpk0ebikht/libmagic-mgc_5.46-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 g++-riscv64-linux-gnu riscv64 4:14.2.0-1 [1196 B] Fetched 1196 B in 0s (20.5 kB/s) dpkg-name: info: moved 'g++-riscv64-linux-gnu_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpwg9l4uck/g++-riscv64-linux-gnu_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libpam-modules riscv64 1.7.0-5 [177 kB] Fetched 177 kB in 0s (2693 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgvkp63e/libpam-modules_1.7.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Fetched 3019 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpju0levav/perl-modules-5.40_5.40.1-6_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB] Fetched 978 kB in 0s (8753 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp2aeakq0_/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libmagic1t64 riscv64 1:5.46-5 [117 kB] Fetched 117 kB in 0s (1861 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmp23a3obqi/libmagic1t64_5.46-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 xz-utils riscv64 5.8.1-1 [659 kB] Fetched 659 kB in 0s (7106 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2l58oxhw/xz-utils_5.8.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libaudit1 riscv64 1:4.0.5-1 [58.2 kB] Fetched 58.2 kB in 0s (986 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.0.5-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp1neu3rg6/libaudit1_4.0.5-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libzstd1 riscv64 1.5.7+dfsg-1 [360 kB] Fetched 360 kB in 0s (4746 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6iyyynmj/libzstd1_1.5.7+dfsg-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 ncurses-bin riscv64 6.5+20250216-2 [436 kB] Fetched 436 kB in 0s (5154 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi8pc4b5z/ncurses-bin_6.5+20250216-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (3867 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzy7_p8v0/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 liblsan0 riscv64 15.2.0-1 [1326 kB] Fetched 1326 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpymi97jmz/liblsan0_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libmpc3 riscv64 1.3.1-1+b3 [56.7 kB] Fetched 56.7 kB in 0s (946 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvpzpuh8a/libmpc3_1.3.1-1+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 build-essential riscv64 12.12 [4628 B] Fetched 4628 B in 0s (79.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqrb4n11m/build-essential_12.12_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libatomic1 riscv64 15.2.0-1 [8528 B] Fetched 8528 B in 0s (147 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgloaa4eq/libatomic1_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 patch riscv64 2.8-2 [134 kB] Fetched 134 kB in 0s (2082 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ijikxlf/patch_2.8-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 gcc-14 riscv64 14.3.0-5 [543 kB] Fetched 543 kB in 0s (6131 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplqty22va/gcc-14_14.3.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 debianutils riscv64 5.23.2 [91.7 kB] Fetched 91.7 kB in 0s (1495 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpskxy8349/debianutils_5.23.2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (3486 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpla3vsaxz/libpam-runtime_1.7.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 man-db riscv64 2.13.1-1 [1458 kB] Fetched 1458 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6r7_jplr/man-db_2.13.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 make riscv64 4.4.1-2 [463 kB] Fetched 463 kB in 0s (5646 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpimtbxyss/make_4.4.1-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 dwz riscv64 0.15-1+b3 [114 kB] Fetched 114 kB in 0s (1812 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppoafr22h/dwz_0.15-1+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libxml2-16 riscv64 2.14.5+dfsg-0.1 [653 kB] Fetched 653 kB in 0s (7011 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg754tjr5/libxml2-16_2.14.5+dfsg-0.1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (5834 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaffyt65k/autoconf_2.72-3.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 gcc-14-base riscv64 14.3.0-5 [51.6 kB] Fetched 51.6 kB in 0s (856 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyplm1f5w/gcc-14-base_14.3.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 gcc-15-base riscv64 15.2.0-1 [52.0 kB] Fetched 52.0 kB in 0s (893 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2rx62gxf/gcc-15-base_15.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 findutils riscv64 4.10.0-3 [706 kB] Fetched 706 kB in 0s (7437 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphzvq7uwo/findutils_4.10.0-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 autopoint all 0.23.1-2 [770 kB] Fetched 770 kB in 0s (7671 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphe8a48u7/autopoint_0.23.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 cpp riscv64 4:14.2.0-1 [1576 B] Fetched 1576 B in 0s (27.6 kB/s) dpkg-name: info: moved 'cpp_4%3a14.2.0-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpo_4480h0/cpp_14.2.0-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Fetched 8620 B in 0s (151 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe7vpdb81/dh-strip-nondeterminism_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 gzip riscv64 1.13-1 [139 kB] Fetched 139 kB in 0s (2153 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiko17cam/gzip_1.13-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Fetched 19.7 kB in 0s (336 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfr_j2w6v/libfile-stripnondeterminism-perl_1.14.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 bsdutils riscv64 1:2.41.1-1 [113 kB] Fetched 113 kB in 0s (1804 kB/s) dpkg-name: info: moved 'bsdutils_1%3a2.41.1-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpff0ut7fk/bsdutils_2.41.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 hostname riscv64 3.25 [10.7 kB] Fetched 10.7 kB in 0s (189 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbp55uuc1/hostname_3.25_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 dh-autoreconf all 20 [17.1 kB] Fetched 17.1 kB in 0s (298 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsy4tho1c/dh-autoreconf_20_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 sed riscv64 4.9-2 [329 kB] Fetched 329 kB in 0s (4377 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt4vm4s6n/sed_4.9-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 base-files riscv64 14 [72.9 kB] Fetched 72.9 kB in 0s (1213 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpque5p80m/base-files_14_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libpam0g riscv64 1.7.0-5 [70.2 kB] Fetched 70.2 kB in 0s (1180 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp01dvqw62/libpam0g_1.7.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9o6m2uvn/dpkg-dev_1.22.21_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libstdc++-14-dev riscv64 14.3.0-5 [5817 kB] Fetched 5817 kB in 0s (15.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpladvg1pb/libstdc++-14-dev_14.3.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libgprofng0 riscv64 2.45-4 [719 kB] Fetched 719 kB in 0s (7393 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfrgjb6s5/libgprofng0_2.45-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libtool all 2.5.4-4 [539 kB] Fetched 539 kB in 0s (6201 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprcd77mbp/libtool_2.5.4-4_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libpipeline1 riscv64 1.5.8-1 [40.3 kB] Fetched 40.3 kB in 0s (685 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvkv2m044/libpipeline1_1.5.8-1_riscv64.deb' Downloading dependency 1 of 147: libgdbm-compat4t64:riscv64=1.24-2 Downloading dependency 2 of 147: intltool-debian:riscv64=0.35.0+20060710.6 Downloading dependency 3 of 147: perl:riscv64=5.40.1-6 Downloading dependency 4 of 147: gettext:riscv64=0.23.1-2+b1 Downloading dependency 5 of 147: libmd0:riscv64=1.1.0-2+b1 Downloading dependency 6 of 147: libunistring5:riscv64=1.3-2 Downloading dependency 7 of 147: dpkg:riscv64=1.22.21 Downloading dependency 8 of 147: libaudit-common:riscv64=1:4.0.5-1 Downloading dependency 9 of 147: libdb5.3t64:riscv64=5.3.28+dfsg2-9 Downloading dependency 10 of 147: libisl23:riscv64=0.27-1 Downloading dependency 11 of 147: libubsan1:riscv64=15.2.0-1 Downloading dependency 12 of 147: libc-bin:riscv64=2.41-12 Downloading dependency 13 of 147: zlib1g:riscv64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 14 of 147: linux-libc-dev:riscv64=6.12.38-1 Downloading dependency 15 of 147: libcc1-0:riscv64=15.2.0-1 Downloading dependency 16 of 147: libsmartcols1:riscv64=2.41.1-1 Downloading dependency 17 of 147: tcsh:riscv64=6.24.13-2 Downloading dependency 18 of 147: file:riscv64=1:5.46-5 Downloading dependency 19 of 147: libasan8:riscv64=15.2.0-1 Downloading dependency 20 of 147: libctf0:riscv64=2.45-4 Downloading dependency 21 of 147: m4:riscv64=1.4.19-8 Downloading dependency 22 of 147: grep:riscv64=3.11-4 Downloading dependency 23 of 147: libc6:riscv64=2.41-12 Downloading dependency 24 of 147: bash:riscv64=5.2.37-2+b5 Downloading dependency 25 of 147: autotools-dev:riscv64=20240727.1 Downloading dependency 26 of 147: libitm1:riscv64=15.2.0-1 Downloading dependency 27 of 147: libcrypt1:riscv64=1:4.4.38-1 Downloading dependency 28 of 147: libarchive-zip-perl:riscv64=1.68-1 Downloading dependency 29 of 147: libelf1t64:riscv64=0.192-4 Downloading dependency 30 of 147: tar:riscv64=1.35+dfsg-3.1 Downloading dependency 31 of 147: libdpkg-perl:riscv64=1.22.21 Downloading dependency 32 of 147: debhelper:riscv64=13.25 Downloading dependency 33 of 147: libsqlite3-0:riscv64=3.46.1-7 Downloading dependency 34 of 147: groff-base:riscv64=1.23.0-9 Downloading dependency 35 of 147: libtsan2:riscv64=15.2.0-1 Downloading dependency 36 of 147: sysvinit-utils:riscv64=3.14-4 Downloading dependency 37 of 147: gcc-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 38 of 147: libgomp1:riscv64=15.2.0-1 Downloading dependency 39 of 147: libbinutils:riscv64=2.45-4 Downloading dependency 40 of 147: libpcre2-8-0:riscv64=10.45-1 Downloading dependency 41 of 147: cpp-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 42 of 147: cpp-14:riscv64=14.3.0-5 Downloading dependency 43 of 147: libbz2-dev:riscv64=1.0.8-6 Downloading dependency 44 of 147: debconf:riscv64=1.5.91 Downloading dependency 45 of 147: libc6-dev:riscv64=2.41-12 Downloading dependency 46 of 147: libcap-ng0:riscv64=0.8.5-4+b1 Downloading dependency 47 of 147: libbz2-1.0:riscv64=1.0.8-6 Downloading dependency 48 of 147: libdebconfclient0:riscv64=0.280 Downloading dependency 49 of 147: binutils-riscv64-linux-gnu:riscv64=2.45-4 Downloading dependency 50 of 147: diffutils:riscv64=1:3.10-4 Downloading dependency 51 of 147: gcc:riscv64=4:14.2.0-1 Downloading dependency 52 of 147: gettext-base:riscv64=0.23.1-2+b1 Downloading dependency 53 of 147: libssl3t64:riscv64=3.5.2-1 Downloading dependency 54 of 147: libmount1:riscv64=2.41.1-1 Downloading dependency 55 of 147: rpcsvc-proto:riscv64=1.4.3-1+b2 Downloading dependency 56 of 147: binutils:riscv64=2.45-4 Downloading dependency 57 of 147: libuchardet0:riscv64=0.0.8-1+b2 Downloading dependency 58 of 147: libcap2:riscv64=1:2.75-10+b1 Downloading dependency 59 of 147: liblastlog2-2:riscv64=2.41.1-1 Downloading dependency 60 of 147: po-debconf:riscv64=1.0.21+nmu1 Downloading dependency 61 of 147: libc-dev-bin:riscv64=2.41-12 Downloading dependency 62 of 147: mawk:riscv64=1.3.4.20250131-1 Downloading dependency 63 of 147: g++:riscv64=4:14.2.0-1 Downloading dependency 64 of 147: help2man:riscv64=1.49.3+b1 Downloading dependency 65 of 147: dash:riscv64=0.5.12-12 Downloading dependency 66 of 147: libgcc-s1:riscv64=15.2.0-1 Downloading dependency 67 of 147: libtinfo6:riscv64=6.5+20250216-2 Downloading dependency 68 of 147: g++-14-riscv64-linux-gnu:riscv64=14.3.0-5 Downloading dependency 69 of 147: libdebhelper-perl:riscv64=13.25 Downloading dependency 70 of 147: libudev1:riscv64=258~rc2-2 Downloading dependency 71 of 147: libstdc++6:riscv64=15.2.0-1 Downloading dependency 72 of 147: liblzma5:riscv64=5.8.1-1 Downloading dependency 73 of 147: automake:riscv64=1:1.17-4 Downloading dependency 74 of 147: gcc-14-riscv64-linux-gnu:riscv64=14.3.0-5 Downloading dependency 75 of 147: libgmp10:riscv64=2:6.3.0+dfsg-3 Downloading dependency 76 of 147: sensible-utils:riscv64=0.0.26 Downloading dependency 77 of 147: base-passwd:riscv64=3.6.7 Downloading dependency 78 of 147: libuuid1:riscv64=2.41.1-1 Downloading dependency 79 of 147: cpp-14-riscv64-linux-gnu:riscv64=14.3.0-5 Downloading dependency 80 of 147: libsystemd0:riscv64=258~rc2-2 Downloading dependency 81 of 147: bzip2:riscv64=1.0.8-6 Downloading dependency 82 of 147: libctf-nobfd0:riscv64=2.45-4 Downloading dependency 83 of 147: g++-14:riscv64=14.3.0-5 Downloading dependency 84 of 147: libjansson-dev:riscv64=2.14-2+b3 Downloading dependency 85 of 147: perl-base:riscv64=5.40.1-6 Downloading dependency 86 of 147: libsframe2:riscv64=2.45-4 Downloading dependency 87 of 147: openssl-provider-legacy:riscv64=3.5.2-1 Downloading dependency 88 of 147: libmagic-mgc:riscv64=1:5.46-5 Downloading dependency 89 of 147: g++-riscv64-linux-gnu:riscv64=4:14.2.0-1 Downloading dependency 90 of 147: libpam-modules:riscv64=1.7.0-5 Downloading dependency 91 of 147: perl-modules-5.40:riscv64=5.40.1-6 Downloading dependency 92 of 147: zlib1g-dev:riscv64=1:1.3.dfsg+really1.3.1-1+b1 Downloading dependency 93 of 147: libmagic1t64:riscv64=1:5.46-5 Downloading dependency 94 of 147: xz-utils:riscv64=5.8.1-1 Downloading dependency 95 of 147: libaudit1:riscv64=1:4.0.5-1 Downloading dependency 96 of 147: libzstd1:riscv64=1.5.7+dfsg-1 Downloading dependency 97 of 147: ncurses-bin:riscv64=6.5+20250216-2 Downloading dependency 98 of 147: ncurses-base:riscv64=6.5+20250216-2 Downloading dependency 99 of 147: liblsan0:riscv64=15.2.0-1 Downloading dependency 100 of 147: libmpc3:riscv64=1.3.1-1+b3 Downloading dependency 101 of 147: build-essential:riscv64=12.12 Downloading dependency 102 of 147: libatomic1:riscv64=15.2.0-1 Downloading dependency 103 of 147: patch:riscv64=2.8-2 Downloading dependency 104 of 147: gcc-14:riscv64=14.3.0-5 Downloading dependency 105 of 147: debianutils:riscv64=5.23.2 Downloading dependency 106 of 147: libpam-runtime:riscv64=1.7.0-5 Downloading dependency 107 of 147: man-db:riscv64=2.13.1-1 Downloading dependency 108 of 147: make:riscv64=4.4.1-2 Downloading dependency 109 of 147: dwz:riscv64=0.15-1+b3 Downloading dependency 110 of 147: libxml2-16:riscv64=2.14.5+dfsg-0.1 Downloading dependency 111 of 147: autoconf:riscv64=2.72-3.1 Downloading dependency 112 of 147: gcc-14-base:riscv64=14.3.0-5 Downloading dependency 113 of 147: gcc-15-base:riscv64=15.2.0-1 Downloading dependency 114 of 147: findutils:riscv64=4.10.0-3 Downloading dependency 115 of 147: autopoint:riscv64=0.23.1-2 Downloading dependency 116 of 147: cpp:riscv64=4:14.2.0-1 Downloading dependency 117 of 147: dh-strip-nondeterminism:riscv64=1.14.1-2 Downloading dependency 118 of 147: gzip:riscv64=1.13-1 Downloading dependency 119 of 147: libfile-stripnondeterminism-perl:riscv64=1.14.1-2 Downloading dependency 120 of 147: bsdutils:riscv64=1:2.41.1-1 Downloading dependency 121 of 147: hostname:riscv64=3.25 Downloading dependency 122 of 147: dh-autoreconf:riscv64=20 Downloading dependency 123 of 147: sed:riscv64=4.9-2 Downloading dependency 124 of 147: base-files:riscv64=14 Downloading dependency 125 of 147: libpam0g:riscv64=1.7.0-5 Downloading dependency 126 of 147: dpkg-dev:riscv64=1.22.21 Downloading dependency 127 of 147: libstdc++-14-dev:riscv64=14.3.0-5 Downloading dependency 128 of 147: libgprofng0:riscv64=2.45-4 Downloading dependency 129 of 147: libtool:riscv64=2.5.4-4 Downloading dependency 130 of 147: libpipeline1:riscv64=1.5.8-1 Downloading dependency 131 of 147: libblkid1:riscv64=2.41.1-1Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libblkid1 riscv64 2.41.1-1 [193 kB] Fetched 193 kB in 0s (2850 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2ym2b91z/libblkid1_2.41.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libjansson4 riscv64 2.14-2+b3 [40.7 kB] Fetched 40.7 kB in 0s (687 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0uqgyya7/libjansson4_2.14-2+b3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libacl1 riscv64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (570 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxtj85dvq/libacl1_2.3.2-2+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 util-linux riscv64 2.41.1-1 [1235 kB] Fetched 1235 kB in 0s (9744 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9g9nf_yf/util-linux_2.41.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libattr1 riscv64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (393 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpwtnh5r_b/libattr1_2.5.2-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libpam-modules-bin riscv64 1.7.0-5 [49.3 kB] Fetched 49.3 kB in 0s (830 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6yohgxp5/libpam-modules-bin_1.7.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 coreutils riscv64 9.7-3 [3036 kB] Fetched 3036 kB in 0s (13.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplb20wkdm/coreutils_9.7-3_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libgdbm6t64 riscv64 1.24-2 [75.9 kB] Fetched 75.9 kB in 0s (1243 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbwlekvsq/libgdbm6t64_1.24-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 liblocale-gettext-perl riscv64 1.07-7+b1 [15.2 kB] Fetched 15.2 kB in 0s (261 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp77nvuozq/liblocale-gettext-perl_1.07-7+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libselinux1 riscv64 3.8.1-1 [88.1 kB] Fetched 88.1 kB in 0s (1435 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp54g_lllg/libselinux1_3.8.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libcrypt-dev riscv64 1:4.4.38-1 [221 kB] Fetched 221 kB in 0s (3174 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.4.38-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpjzlmx0w5/libcrypt-dev_4.4.38-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libgcc-14-dev riscv64 14.3.0-5 [5176 kB] Fetched 5176 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpltgaw_a8/libgcc-14-dev_14.3.0-5_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 binutils-common riscv64 2.45-4 [2556 kB] Fetched 2556 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2uy8t4e9/binutils-common_2.45-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libmpfr6 riscv64 4.2.2-1 [664 kB] Fetched 664 kB in 0s (6905 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpepokg_15/libmpfr6_4.2.2-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 libperl5.40 riscv64 5.40.1-6 [3945 kB] Fetched 3945 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm42punz_/libperl5.40_5.40.1-6_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 bsdextrautils riscv64 2.41.1-1 [98.2 kB] Fetched 98.2 kB in 0s (1583 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7yfb43xc/bsdextrautils_2.41.1-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20250824T022542Z sid/main riscv64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (669 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptnp0eqkv/init-system-helpers_1.69_all.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_riscv64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_riscv64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp27vy3hl9/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture riscv64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.KP_HVP_sll as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.KP_HVP_sll 127.0.0.1 - - [11/Oct/2025 02:39:08] code 404, message File not found 127.0.0.1 - - [11/Oct/2025 02:39:08] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:37855 ./ InRelease 127.0.0.1 - - [11/Oct/2025 02:39:08] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:37855 ./ Release [462 B] 127.0.0.1 - - [11/Oct/2025 02:39:08] code 404, message File not found 127.0.0.1 - - [11/Oct/2025 02:39:08] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:37855 ./ Release.gpg 127.0.0.1 - - [11/Oct/2025 02:39:08] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:37855 ./ Packages [182 kB] Fetched 183 kB in 0s (1394 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [11/Oct/2025 02:39:08] "GET /./gcc-15-base_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:08] "GET /./libc6_2.41-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libgcc-s1_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./mawk_1.3.4.20250131-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./base-files_14_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libtinfo6_6.5%2b20250216-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./debianutils_5.23.2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./bash_5.2.37-2%2bb5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libcap2_2.75-10%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libsystemd0_258%7erc2-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./bsdutils_2.41.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libacl1_2.3.2-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libattr1_2.5.2-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libgmp10_6.3.0%2bdfsg-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libpcre2-8-0_10.45-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libselinux1_3.8.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libzstd1_1.5.7%2bdfsg-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./libssl3t64_3.5.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./openssl-provider-legacy_3.5.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:09] "GET /./coreutils_9.7-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./dash_0.5.12-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./diffutils_3.10-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libbz2-1.0_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./liblzma5_5.8.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libmd0_1.1.0-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./tar_1.35%2bdfsg-3.1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./dpkg_1.22.21_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./findutils_4.10.0-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./grep_3.11-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./gzip_1.13-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./hostname_3.25_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./ncurses-bin_6.5%2b20250216-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libcrypt1_4.4.38-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./perl-base_5.40.1-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./sed_4.9-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libaudit-common_4.0.5-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libcap-ng0_0.8.5-4%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libaudit1_4.0.5-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libdb5.3t64_5.3.28%2bdfsg2-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./debconf_1.5.91_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libpam0g_1.7.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libpam-modules-bin_1.7.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libpam-modules_1.7.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libblkid1_2.41.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:10] "GET /./libsqlite3-0_3.46.1-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./liblastlog2-2_2.41.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./libmount1_2.41.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./libsmartcols1_2.41.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./libudev1_258%7erc2-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./libuuid1_2.41.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./util-linux_2.41.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./libdebconfclient0_0.280_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./base-passwd_3.6.7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./libc-bin_2.41-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:11] "GET /./sysvinit-utils_3.14-4_riscv64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.KP_HVP_sll 127.0.0.1 - - [11/Oct/2025 02:39:19] code 404, message File not found 127.0.0.1 - - [11/Oct/2025 02:39:19] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:37855 ./ InRelease 127.0.0.1 - - [11/Oct/2025 02:39:19] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:37855 ./ Release 127.0.0.1 - - [11/Oct/2025 02:39:19] code 404, message File not found 127.0.0.1 - - [11/Oct/2025 02:39:19] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:37855 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.KP_HVP_sll usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [11/Oct/2025 02:39:42] "GET /./liblocale-gettext-perl_1.07-7%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:42] "GET /./sensible-utils_0.0.26_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:42] "GET /./libstdc%2b%2b6_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./libuchardet0_0.0.8-1%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./groff-base_1.23.0-9_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./bsdextrautils_2.41.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./libgdbm6t64_1.24-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./libpipeline1_1.5.8-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./man-db_2.13.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./bzip2_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./libmagic-mgc_5.46-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./libmagic1t64_5.46-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./file_5.46-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./gettext-base_0.23.1-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./perl-modules-5.40_5.40.1-6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./libgdbm-compat4t64_1.24-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:43] "GET /./libperl5.40_5.40.1-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./perl_5.40.1-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./xz-utils_5.8.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./m4_1.4.19-8_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./autoconf_2.72-3.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./autotools-dev_20240727.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./automake_1.17-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./autopoint_0.23.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./libsframe2_2.45-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./binutils-common_2.45-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./libbinutils_2.45-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./libgprofng0_2.45-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./libctf-nobfd0_2.45-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./libctf0_2.45-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./libjansson4_2.14-2%2bb3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./binutils-riscv64-linux-gnu_2.45-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./binutils_2.45-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./libc-dev-bin_2.41-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:44] "GET /./linux-libc-dev_6.12.38-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:45] "GET /./libcrypt-dev_4.4.38-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:45] "GET /./rpcsvc-proto_1.4.3-1%2bb2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:45] "GET /./libc6-dev_2.41-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:45] "GET /./gcc-14-base_14.3.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:45] "GET /./libisl23_0.27-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:45] "GET /./libmpfr6_4.2.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:45] "GET /./libmpc3_1.3.1-1%2bb3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:45] "GET /./cpp-14-riscv64-linux-gnu_14.3.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:46] "GET /./cpp-14_14.3.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:46] "GET /./cpp-riscv64-linux-gnu_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:46] "GET /./cpp_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:46] "GET /./libcc1-0_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:46] "GET /./libgomp1_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:46] "GET /./libitm1_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:46] "GET /./libatomic1_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:46] "GET /./libasan8_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:47] "GET /./liblsan0_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:47] "GET /./libtsan2_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:47] "GET /./libubsan1_15.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:47] "GET /./libgcc-14-dev_14.3.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:48] "GET /./gcc-14-riscv64-linux-gnu_14.3.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:50] "GET /./gcc-14_14.3.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:50] "GET /./gcc-riscv64-linux-gnu_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:50] "GET /./gcc_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:50] "GET /./libstdc%2b%2b-14-dev_14.3.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:50] "GET /./g%2b%2b-14-riscv64-linux-gnu_14.3.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./g%2b%2b-14_14.3.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./g%2b%2b-riscv64-linux-gnu_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./g%2b%2b_14.2.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./make_4.4.1-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./libdpkg-perl_1.22.21_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./patch_2.8-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./dpkg-dev_1.22.21_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./build-essential_12.12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./libdebhelper-perl_13.25_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./libtool_2.5.4-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./dh-autoreconf_20_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./libarchive-zip-perl_1.68-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./libfile-stripnondeterminism-perl_1.14.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./dh-strip-nondeterminism_1.14.1-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./libelf1t64_0.192-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./dwz_0.15-1%2bb3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./libunistring5_1.3-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./libxml2-16_2.14.5%2bdfsg-0.1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./gettext_0.23.1-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./intltool-debian_0.35.0%2b20060710.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./po-debconf_1.0.21%2bnmu1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:52] "GET /./debhelper_13.25_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:53] "GET /./tcsh_6.24.13-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:53] "GET /./libbz2-dev_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:53] "GET /./help2man_1.49.3%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:53] "GET /./libjansson-dev_2.14-2%2bb3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:53] "GET /./zlib1g-dev_1.3.dfsg%2breally1.3.1-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [11/Oct/2025 02:39:53] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp27vy3hl9/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.KP_HVP_sll Reading package lists... Building dependency tree... Reading state information... libgdbm-compat4t64 is already the newest version (1.24-2). libgdbm-compat4t64 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. perl is already the newest version (5.40.1-6). perl set to manually installed. gettext is already the newest version (0.23.1-2+b1). gettext set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. dpkg is already the newest version (1.22.21). libaudit-common is already the newest version (1:4.0.5-1). libdb5.3t64 is already the newest version (5.3.28+dfsg2-9). libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libubsan1 is already the newest version (15.2.0-1). libubsan1 set to manually installed. libc-bin is already the newest version (2.41-12). zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). linux-libc-dev is already the newest version (6.12.38-1). linux-libc-dev set to manually installed. libcc1-0 is already the newest version (15.2.0-1). libcc1-0 set to manually installed. libsmartcols1 is already the newest version (2.41.1-1). tcsh is already the newest version (6.24.13-2). tcsh set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. libasan8 is already the newest version (15.2.0-1). libasan8 set to manually installed. libctf0 is already the newest version (2.45-4). libctf0 set to manually installed. m4 is already the newest version (1.4.19-8). m4 set to manually installed. grep is already the newest version (3.11-4). libc6 is already the newest version (2.41-12). bash is already the newest version (5.2.37-2+b5). autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. libitm1 is already the newest version (15.2.0-1). libitm1 set to manually installed. libcrypt1 is already the newest version (1:4.4.38-1). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. libelf1t64 is already the newest version (0.192-4). libelf1t64 set to manually installed. tar is already the newest version (1.35+dfsg-3.1). libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. debhelper is already the newest version (13.25). debhelper set to manually installed. libsqlite3-0 is already the newest version (3.46.1-7). groff-base is already the newest version (1.23.0-9). groff-base set to manually installed. libtsan2 is already the newest version (15.2.0-1). libtsan2 set to manually installed. sysvinit-utils is already the newest version (3.14-4). gcc-riscv64-linux-gnu is already the newest version (4:14.2.0-1). gcc-riscv64-linux-gnu set to manually installed. libgomp1 is already the newest version (15.2.0-1). libgomp1 set to manually installed. libbinutils is already the newest version (2.45-4). libbinutils set to manually installed. libpcre2-8-0 is already the newest version (10.45-1). cpp-riscv64-linux-gnu is already the newest version (4:14.2.0-1). cpp-riscv64-linux-gnu set to manually installed. cpp-14 is already the newest version (14.3.0-5). cpp-14 set to manually installed. libbz2-dev is already the newest version (1.0.8-6). libbz2-dev set to manually installed. debconf is already the newest version (1.5.91). libc6-dev is already the newest version (2.41-12). libc6-dev set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). libbz2-1.0 is already the newest version (1.0.8-6). libdebconfclient0 is already the newest version (0.280). binutils-riscv64-linux-gnu is already the newest version (2.45-4). binutils-riscv64-linux-gnu set to manually installed. diffutils is already the newest version (1:3.10-4). gcc is already the newest version (4:14.2.0-1). gcc set to manually installed. gettext-base is already the newest version (0.23.1-2+b1). gettext-base set to manually installed. libssl3t64 is already the newest version (3.5.2-1). libmount1 is already the newest version (2.41.1-1). rpcsvc-proto is already the newest version (1.4.3-1+b2). rpcsvc-proto set to manually installed. binutils is already the newest version (2.45-4). binutils set to manually installed. libuchardet0 is already the newest version (0.0.8-1+b2). libuchardet0 set to manually installed. libcap2 is already the newest version (1:2.75-10+b1). liblastlog2-2 is already the newest version (2.41.1-1). po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. libc-dev-bin is already the newest version (2.41-12). libc-dev-bin set to manually installed. mawk is already the newest version (1.3.4.20250131-1). g++ is already the newest version (4:14.2.0-1). g++ set to manually installed. help2man is already the newest version (1.49.3+b1). help2man set to manually installed. dash is already the newest version (0.5.12-12). libgcc-s1 is already the newest version (15.2.0-1). libtinfo6 is already the newest version (6.5+20250216-2). g++-14-riscv64-linux-gnu is already the newest version (14.3.0-5). g++-14-riscv64-linux-gnu set to manually installed. libdebhelper-perl is already the newest version (13.25). libdebhelper-perl set to manually installed. libudev1 is already the newest version (258~rc2-2). libstdc++6 is already the newest version (15.2.0-1). libstdc++6 set to manually installed. liblzma5 is already the newest version (5.8.1-1). automake is already the newest version (1:1.17-4). automake set to manually installed. gcc-14-riscv64-linux-gnu is already the newest version (14.3.0-5). gcc-14-riscv64-linux-gnu set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-3). sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. base-passwd is already the newest version (3.6.7). libuuid1 is already the newest version (2.41.1-1). cpp-14-riscv64-linux-gnu is already the newest version (14.3.0-5). cpp-14-riscv64-linux-gnu set to manually installed. libsystemd0 is already the newest version (258~rc2-2). bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. libctf-nobfd0 is already the newest version (2.45-4). libctf-nobfd0 set to manually installed. g++-14 is already the newest version (14.3.0-5). g++-14 set to manually installed. libjansson-dev is already the newest version (2.14-2+b3). libjansson-dev set to manually installed. perl-base is already the newest version (5.40.1-6). libsframe2 is already the newest version (2.45-4). libsframe2 set to manually installed. openssl-provider-legacy is already the newest version (3.5.2-1). libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. g++-riscv64-linux-gnu is already the newest version (4:14.2.0-1). g++-riscv64-linux-gnu set to manually installed. libpam-modules is already the newest version (1.7.0-5). perl-modules-5.40 is already the newest version (5.40.1-6). perl-modules-5.40 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. xz-utils is already the newest version (5.8.1-1). xz-utils set to manually installed. libaudit1 is already the newest version (1:4.0.5-1). libzstd1 is already the newest version (1.5.7+dfsg-1). ncurses-bin is already the newest version (6.5+20250216-2). ncurses-base is already the newest version (6.5+20250216-2). liblsan0 is already the newest version (15.2.0-1). liblsan0 set to manually installed. libmpc3 is already the newest version (1.3.1-1+b3). libmpc3 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libatomic1 is already the newest version (15.2.0-1). libatomic1 set to manually installed. patch is already the newest version (2.8-2). patch set to manually installed. gcc-14 is already the newest version (14.3.0-5). gcc-14 set to manually installed. debianutils is already the newest version (5.23.2). libpam-runtime is already the newest version (1.7.0-5). man-db is already the newest version (2.13.1-1). man-db set to manually installed. make is already the newest version (4.4.1-2). make set to manually installed. dwz is already the newest version (0.15-1+b3). dwz set to manually installed. libxml2-16 is already the newest version (2.14.5+dfsg-0.1). libxml2-16 set to manually installed. autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. gcc-14-base is already the newest version (14.3.0-5). gcc-14-base set to manually installed. gcc-15-base is already the newest version (15.2.0-1). findutils is already the newest version (4.10.0-3). autopoint is already the newest version (0.23.1-2). autopoint set to manually installed. cpp is already the newest version (4:14.2.0-1). cpp set to manually installed. dh-strip-nondeterminism is already the newest version (1.14.1-2). dh-strip-nondeterminism set to manually installed. gzip is already the newest version (1.13-1). libfile-stripnondeterminism-perl is already the newest version (1.14.1-2). libfile-stripnondeterminism-perl set to manually installed. bsdutils is already the newest version (1:2.41.1-1). hostname is already the newest version (3.25). dh-autoreconf is already the newest version (20). dh-autoreconf set to manually installed. sed is already the newest version (4.9-2). base-files is already the newest version (14). libpam0g is already the newest version (1.7.0-5). dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. libstdc++-14-dev is already the newest version (14.3.0-5). libstdc++-14-dev set to manually installed. libgprofng0 is already the newest version (2.45-4). libgprofng0 set to manually installed. libtool is already the newest version (2.5.4-4). libtool set to manually installed. libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libblkid1 is already the newest version (2.41.1-1). libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). util-linux is already the newest version (2.41.1-1). libattr1 is already the newest version (1:2.5.2-3). libpam-modules-bin is already the newest version (1.7.0-5). coreutils is already the newest version (9.7-3). libgdbm6t64 is already the newest version (1.24-2). libgdbm6t64 set to manually installed. liblocale-gettext-perl is already the newest version (1.07-7+b1). liblocale-gettext-perl set to manually installed. libselinux1 is already the newest version (3.8.1-1). libcrypt-dev is already the newest version (1:4.4.38-1). libcrypt-dev set to manually installed. libgcc-14-dev is already the newest version (14.3.0-5). libgcc-14-dev set to manually installed. binutils-common is already the newest version (2.45-4). binutils-common set to manually installed. libmpfr6 is already the newest version (4.2.2-1). libmpfr6 set to manually installed. libperl5.40 is already the newest version (5.40.1-6). libperl5.40 set to manually installed. bsdextrautils is already the newest version (2.41.1-1). bsdextrautils set to manually installed. init-system-helpers is already the newest version (1.69). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.KP_HVP_sll (Reading database ... 13702 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.KP_HVP_sll I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.KP_HVP_sll I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.KP_HVP_sll... I: success in 124.1029 seconds Downloading dependency 132 of 147: libjansson4:riscv64=2.14-2+b3 Downloading dependency 133 of 147: libacl1:riscv64=2.3.2-2+b1 Downloading dependency 134 of 147: util-linux:riscv64=2.41.1-1 Downloading dependency 135 of 147: libattr1:riscv64=1:2.5.2-3 Downloading dependency 136 of 147: libpam-modules-bin:riscv64=1.7.0-5 Downloading dependency 137 of 147: coreutils:riscv64=9.7-3 Downloading dependency 138 of 147: libgdbm6t64:riscv64=1.24-2 Downloading dependency 139 of 147: liblocale-gettext-perl:riscv64=1.07-7+b1 Downloading dependency 140 of 147: libselinux1:riscv64=3.8.1-1 Downloading dependency 141 of 147: libcrypt-dev:riscv64=1:4.4.38-1 Downloading dependency 142 of 147: libgcc-14-dev:riscv64=14.3.0-5 Downloading dependency 143 of 147: binutils-common:riscv64=2.45-4 Downloading dependency 144 of 147: libmpfr6:riscv64=4.2.2-1 Downloading dependency 145 of 147: libperl5.40:riscv64=5.40.1-6 Downloading dependency 146 of 147: bsdextrautils:riscv64=2.41.1-1 Downloading dependency 147 of 147: init-system-helpers:riscv64=1.69 env --chdir=/srv/rebuilderd/tmp/rebuilderdFbzz7K/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1755468282 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildfv85tI/debrebuild.sbuildrc.bvMbAgDIo20K sbuild --build=riscv64 --host=riscv64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildfv85tI/debrebuild.tar.bXVK6jFteyHp --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=bedops-2.4.42+dfsg /srv/rebuilderd/tmp/rebuilderdFbzz7K/inputs/bedops_2.4.42+dfsg-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on localhost +==============================================================================+ | bedops 2.4.42+dfsg-1 (riscv64) Fri, 10 Oct 2025 18:41:13 +0000 | +==============================================================================+ Package: bedops Version: 2.4.42+dfsg-1 Source Version: 2.4.42+dfsg-1 Distribution: unstable Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildfv85tI/debrebuild.tar.bXVK6jFteyHp to /srv/rebuilderd/tmp/tmp.sbuild.0dIVr7JgDu... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 10 Oct 2025 18:41:51 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdFbzz7K/inputs/bedops_2.4.42+dfsg-1.dsc exists in /srv/rebuilderd/tmp/rebuilderdFbzz7K/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 10 Oct 2025 18:42:01 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, libjansson-dev, zlib1g-dev, tcsh, build-essential Filtered Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, libjansson-dev, zlib1g-dev, tcsh, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-F03wHz/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 10 Oct 2025 18:42:27 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment Fri, 10 Oct 2025 18:42:30 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.43+deb13-riscv64 #1 SMP Debian 6.12.43-1 (2025-08-27) riscv64 (riscv64) Toolchain package versions: binutils_2.45-4 dpkg-dev_1.22.21 g++-14_14.3.0-5 gcc-14_14.3.0-5 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 linux-libc-dev_6.12.38-1 Package versions: autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.2.37-2+b5 binutils_2.45-4 binutils-common_2.45-4 binutils-riscv64-linux-gnu_2.45-4 bsdextrautils_2.41.1-1 bsdutils_1:2.41.1-1 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.3.0-5 cpp-14-riscv64-linux-gnu_14.3.0-5 cpp-riscv64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.25 debianutils_5.23.2 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b3 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.3.0-5 g++-14-riscv64-linux-gnu_14.3.0-5 g++-riscv64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.3.0-5 gcc-14-base_14.3.0-5 gcc-14-riscv64-linux-gnu_14.3.0-5 gcc-15-base_15.2.0-1 gcc-riscv64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 help2man_1.49.3+b1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_15.2.0-1 libatomic1_15.2.0-1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.45-4 libblkid1_2.41.1-1 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-4 libctf0_2.45-4 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.280 libdebhelper-perl_13.25 libdpkg-perl_1.22.21 libelf1t64_0.192-4 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.3.0-5 libgcc-s1_15.2.0-1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgomp1_15.2.0-1 libgprofng0_2.45-4 libisl23_0.27-1 libitm1_15.2.0-1 libjansson-dev_2.14-2+b3 libjansson4_2.14-2+b3 liblastlog2-2_2.41.1-1 liblocale-gettext-perl_1.07-7+b1 liblsan0_15.2.0-1 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.1-1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libselinux1_3.8.1-1 libsframe2_2.45-4 libsmartcols1_2.41.1-1 libsqlite3-0_3.46.1-7 libssl3t64_3.5.2-1 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 libsystemd0_258~rc2-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_15.2.0-1 libubsan1_15.2.0-1 libuchardet0_0.0.8-1+b2 libudev1_258~rc2-2 libunistring5_1.3-2 libuuid1_2.41.1-1 libxml2-16_2.14.5+dfsg-0.1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.38-1 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.2-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1+b2 sed_4.9-2 sensible-utils_0.0.26 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tcsh_6.24.13-2 util-linux_2.41.1-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Fri, 10 Oct 2025 18:42:30 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bedops Binary: bedops, bedops-doc Architecture: any all Version: 2.4.42+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Étienne Mollier Homepage: https://github.com/bedops/bedops Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/bedops Vcs-Git: https://salsa.debian.org/med-team/bedops.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, libjansson-dev, zlib1g-dev, tcsh Build-Depends-Indep: sphinx-common, dh-sequence-sphinxdoc, libjs-mathjax, python3-sphinx Package-List: bedops deb science optional arch=any bedops-doc deb doc optional arch=all Checksums-Sha1: 7103ff27c84a74043c6cee3faa38bde7d3a94929 13467276 bedops_2.4.42+dfsg.orig.tar.xz afe246e3af2dd0edf30d4ddba169d9e06663ed3e 10812 bedops_2.4.42+dfsg-1.debian.tar.xz Checksums-Sha256: 0f9c01b7bb95590ea79283d6083b3908450e269ef486e29e2548a4f58d6e6ff4 13467276 bedops_2.4.42+dfsg.orig.tar.xz 48dd780c779e4886594f7dae05c57c53f4bdb60ab87e4bbfbf9c9d37f8fa1156 10812 bedops_2.4.42+dfsg-1.debian.tar.xz Files: 76c45fc85e357c97440ca18e479f3610 13467276 bedops_2.4.42+dfsg.orig.tar.xz d8a15447160b28ad53552dcf2633838f 10812 bedops_2.4.42+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCgAxFiEE3z4uQkp+J5wuSwI6ucKa7rL0UKcFAmiiV4YTHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRC5wprusvRQpydhD/9tzmkxZb3V4w4rA8h73dDzFx0czzoe a9+J6pnjzTmP8Pz40KzBI1/UFFCzH/I14XdAJU6sICuitDnBQyfCrSzR7UB0lOjZ cVEl0MzY3WtbFJpZzW3X2Kz9kmaCgqw4SAWngyEpc+T3zj2TPiJ/gcOOxzTrfmF3 dEhURQcvVSNi1hFhqRLcz5Z0XYd1C7QXlB8mbQciF6j4zsbRdIoqHiHVyBZg8feA TQyigF7aLQ9ZdE27QNk3GRuOuiZRIf+rGM5kmTXjCVCTSmVjIAPRYOyylGSCJjQn iW4k6AvBdYkB42f/FH7Gasrsnr79LvH96fOCnZKeg3tkaKZSy1tpy6xIsGEcGPEU RorQc0MS2RsmMx5Wjcyx2LXsiN7KPZyBZcbralaM969zQF0IFFIZ8oFd7DEni5Qd tYKGWbJEmYL+MBhdUCvTlPUkMJNzVmNDd9bgKkSALijNJ7ObN/QZdQTDpC5ujeM3 zNlcGkTynyHtzIbMnc7IwwrckDtmje8L7u5yJjG0JJO0BG6WapBkXMQQc52KnXaV mowUickkeouZH6HrJn6OI5BPiV+G0J2X2B4cPgJaIMXW4VmBcLC5hLZ7hmk4m+Ku AQfwbxdxpCCyQaZN8MH05fSAq6wXktGboW+l+EYPhuzOzoyPxT2Os+IhVEieciOu mJiWx8Mb5Eg11g== =nrPB -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./bedops_2.4.42+dfsg-1.dsc: unsupported subcommand dpkg-source: info: extracting bedops in /build/reproducible-path/bedops-2.4.42+dfsg dpkg-source: info: unpacking bedops_2.4.42+dfsg.orig.tar.xz dpkg-source: info: unpacking bedops_2.4.42+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying tests_use_installed_binaries.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying use_debian_libs dpkg-source: info: applying parallel.patch dpkg-source: info: applying adapt_to_new_sphinx.patch dpkg-source: info: applying intersphinx Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1755468282 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package bedops dpkg-buildpackage: info: source version 2.4.42+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg' dh_auto_clean make -j4 clean make[2]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg' make clean -f system.mk/Makefile.linux make[3]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg' rm -rf bin rm -rf bin rm -rf bin make -C applications/bed/bedextract/src -f Makefile clean make -C applications/bed/bedmap/src -f Makefile clean rm -rf modules make -C applications/bed/bedops/src -f Makefile clean make -C applications/bed/closestfeats/src -f Makefile clean make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedmap/src' rm -rf objects_typical make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedextract/src' rm -rf objects_typical make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedops/src' rm -rf objects_typical rm -rf ../bin make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/closestfeats/src' rm -rf objects_typical rm -rf ../bin rm -rf ../bin make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedmap/src' make -C applications/bed/conversion/src -f Makefile clean rm -rf ../bin make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedops/src' make -C applications/bed/sort-bed/src -f Makefile clean make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/closestfeats/src' make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedextract/src' make -C applications/bed/starch/src -f Makefile clean make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/conversion/src' rm -rf ../bin make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/sort-bed/src' rm -rf objects make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/starch/src' rm -rf ../lib rm -rf *.so *~ rm -f ../lib/libstarch_debug.a rm -rf objects-typical rm -f ../lib/libstarch_gprof.a make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/conversion/src' rm -rf ../bin rm -rf objects make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/sort-bed/src' rm -rf ../bin make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/starch/src' rm -rf third-party/bzip2-1.0.6 rm -f third-party/bzip2 rm -rf third-party/jansson-2.6 rm -f third-party/jansson rm -rf third-party/zlib-1.3.1 rm -f third-party/zlib rm -rf bin make[3]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg' make[2]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg' rm -rf docs/_build/ make[1]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg' make -f system.mk/Makefile.linux make[2]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg' #bzcat | tar -x -C third-party #cd third-party/jansson-2.6 && ./configure --prefix=/build/reproducible-path/bedops-2.4.42+dfsg/third-party/jansson-2.6 && make && make install && cd /build/reproducible-path/bedops-2.4.42+dfsg && rm -f jansson && ln -sf jansson-2.6 third-party/jansson #bzcat | tar -x -C third-party #cd third-party/bzip2-1.0.6 && make libbz2.a && cd /build/reproducible-path/bedops-2.4.42+dfsg && rm -f bzip2 && ln -sf bzip2-1.0.6 third-party/bzip2 #bzcat | tar -x -C third-party #cd third-party/zlib-1.3.1 && ./configure --static && make && cd /build/reproducible-path/bedops-2.4.42+dfsg && rm -f zlib && ln -sf zlib-1.3.1 third-party/zlib make build -f /build/reproducible-path/bedops-2.4.42+dfsg/system.mk/Makefile.linux make[3]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg' make -C applications/bed/bedextract/src -f Makefile build make -C applications/bed/bedmap/src -f Makefile build make -C applications/bed/bedops/src -f Makefile build make -C applications/bed/closestfeats/src -f Makefile build make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedextract/src' mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedmap/src' mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedops/src' mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/closestfeats/src' mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects_typical/NaN.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects_typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects_typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects_typical/starchHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects_typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects_typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:87:13: warning: variable ‘chrFound’ set but not used [-Wunused-but-set-variable] 87 | Boolean chrFound = kStarchFalse; | ^~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:88:13: warning: variable ‘isEmpty’ set but not used [-Wunused-but-set-variable] 88 | Boolean isEmpty = kStarchFalse; | ^~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:87:13: warning: variable ‘chrFound’ set but not used [-Wunused-but-set-variable] 87 | Boolean chrFound = kStarchFalse; | ^~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:88:13: warning: variable ‘isEmpty’ set but not used [-Wunused-but-set-variable] 88 | Boolean isEmpty = kStarchFalse; | ^~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:87:13: warning: variable ‘chrFound’ set but not used [-Wunused-but-set-variable] 87 | Boolean chrFound = kStarchFalse; | ^~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:88:13: warning: variable ‘isEmpty’ set but not used [-Wunused-but-set-variable] 88 | Boolean isEmpty = kStarchFalse; | ^~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:87:13: warning: variable ‘chrFound’ set but not used [-Wunused-but-set-variable] 87 | Boolean chrFound = kStarchFalse; | ^~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:88:13: warning: variable ‘isEmpty’ set but not used [-Wunused-but-set-variable] 88 | Boolean isEmpty = kStarchFalse; | ^~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:83: note: length computed here 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:75: note: length computed here 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:75: note: length computed here 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:83: note: length computed here 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:75: note: length computed here 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:75: note: length computed here 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:83: note: length computed here 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:75: note: length computed here 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:75: note: length computed here 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:83: note: length computed here 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:75: note: length computed here 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:75: note: length computed here 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: note: length computed here 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: note: length computed here 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: note: length computed here 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: note: length computed here 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects_typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p objects_typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers mkdir -p ../bin && g++ -o ../bin/closest-features-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ClosestFeature.cpp mkdir -p ../bin && g++ -o ../bin/bedmap-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedmap.cpp mkdir -p ../bin && g++ -o ../bin/bedops-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 Bedops.cpp mkdir -p ../bin && g++ -o ../bin/bedextract-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -pedantic -O3 -std=c++11 objects_typical/NaN.o objects_typical/starchConstants.o objects_typical/starchFileHelpers.o objects_typical/starchHelpers.o objects_typical/starchMetadataHelpers.o objects_typical/unstarchHelpers.o objects_typical/starchSha1Digest.o objects_typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers -ljansson -lz -lbz2 ExtractRows.cpp In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32, from ExtractRows.cpp:40: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from ExtractRows.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32, from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch.hpp:39, from ClosestFeature.cpp:38: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from ClosestFeature.cpp:27: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/algorithm/visitors/helpers/ProcessBedVisitorRow.hpp:33, from Bedops.cpp:40: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/deque:67, from Bedops.cpp:27: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32, from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch_minmem.hpp:36, from ../../../../interfaces/general-headers/algorithm/../../src/algorithm/sweep/WindowSweepImpl.cpp:27, from ../../../../interfaces/general-headers/algorithm/WindowSweep.hpp:91, from ../../../../interfaces/general-headers/algorithm/visitors/bed/BedBaseVisitor.hpp:31, from ../../../../interfaces/general-headers/algorithm/visitors/BedVisitors.hpp:27, from Bedmap.cpp:37: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from Bedmap.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/algorithm/visitors/NumericalVisitors.hpp:32, from ../../../../interfaces/general-headers/algorithm/visitors/BedVisitors.hpp:34: ../../../../interfaces/general-headers/algorithm/visitors/numerical/MedianAbsoluteDeviationVisitor.hpp:43:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 43 | struct abs_diff : std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:44, from ExtractRows.cpp:43: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch.hpp:42: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator::bed_check_iterator(std::istream&, const std::string&, Ext::PooledMemory&, const std::string&, bool) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:136:36: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ In file included from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch.hpp:42, from Bedops.cpp:41: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:292:36, inlined from ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:267:24, inlined from ‘std::pair Bed::find_bed_range(FILE*, TargetIter, TargetIter, Op) [with TargetIter = bed_check_iterator*, 16>; Op = Visitors::BedHelpers::Println]’ at ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:102:64: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ rm -rf objects_typical make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedextract/src' make -C applications/bed/conversion/src -f Makefile build make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/conversion/src' mkdir -p ../bin && cc -Wall -Wextra -pedantic -std=c99 -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -iquote"/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/conversion/src" -iquote"../../../../interfaces/general-headers" convert2bed.c -o ../bin/convert2bed-typical -lpthread convert2bed.c: In function ‘c2b_line_convert_rmsk_to_bed_unsorted’: convert2bed.c:3809:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 3809 | fprintf(stderr, "Error: Invalid query coordinates at line [%llu]\n", c2b_globals.rmsk->line); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu rm -rf objects_typical make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/closestfeats/src' make -C applications/bed/sort-bed/src -f Makefile build make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/sort-bed/src' mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects-typical/starchConstants.o -iquote../../../../interfaces/general-headers mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects-typical/starchFileHelpers.o -iquote../../../../interfaces/general-headers mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects-typical/starchHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects-typical/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_JSONMetadataExists(FILE**, const char*)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1089:20: warning: comparison is always true due to limited range of data type [-Wtype-limits] 1089 | } while (currC != EOF); | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1090:63: warning: comparison is always false due to limited range of data type [-Wtype-limits] 1090 | if ((nReadBytes == STARCH_LEGACY_METADATA_SIZE) || (currC == EOF)) { | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readJSONMetadata(json_t**, FILE**, const char*, Metadata**, CompressionType*, ArchiveVersion**, char**, char**, uint64_t*, Boolean*, Boolean, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1306:24: warning: comparison is always true due to limited range of data type [-Wtype-limits] 1306 | } while (currC != EOF); | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects-typical/unstarchHelpers.o -iquote../../../../interfaces/general-headers convert2bed.c: In function ‘c2b_line_convert_sam_to_bed_unsorted_with_split_operation’: convert2bed.c:5046:25: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 5046 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ convert2bed.c:5072:21: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 5072 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ convert2bed.c:5090:21: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 5090 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ convert2bed.c:4979:25: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 4979 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ convert2bed.c:5003:21: warning: ‘sprintf’ argument 3 overlaps destination object ‘’ [-Wrestrict] 5003 | sprintf(c2b_globals.sam->element->modified_cigar, "%s%d%c", c2b_globals.sam->element->modified_cigar, bases, current_op); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:87:13: warning: variable ‘chrFound’ set but not used [-Wunused-but-set-variable] 87 | Boolean chrFound = kStarchFalse; | ^~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:88:13: warning: variable ‘isEmpty’ set but not used [-Wunused-but-set-variable] 88 | Boolean isEmpty = kStarchFalse; | ^~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘void starch::UNSTARCH_printMetadataSignature(const unsigned char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2286:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2286 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2288:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2288 | static_cast( mdSha1BufferLength )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2650:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2650 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2652:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2652 | static_cast( STARCH2_MD_FOOTER_SHA1_LENGTH )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:83: note: length computed here 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:75: note: length computed here 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:75: note: length computed here 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: note: length computed here 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects-typical/starchSha1Digest.o -iquote../../../../interfaces/general-headers rm -rf objects make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/conversion/src' mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects-typical/starchBase64Coding.o -iquote../../../../interfaces/general-headers make -C applications/bed/starch/src -f Makefile build make[4]: Entering directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/starch/src' mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 SortDetails.cpp -o objects-typical/SortDetails.o -iquote../../../../interfaces/general-headers ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:87:13: warning: variable ‘chrFound’ set but not used [-Wunused-but-set-variable] 87 | Boolean chrFound = kStarchFalse; | ^~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:88:13: warning: variable ‘isEmpty’ set but not used [-Wunused-but-set-variable] 88 | Boolean isEmpty = kStarchFalse; | ^~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘void starch::UNSTARCH_printMetadataSignature(const unsigned char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2286:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2286 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2288:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2288 | static_cast( mdSha1BufferLength )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2650:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2650 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2652:33: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2652 | static_cast( STARCH2_MD_FOOTER_SHA1_LENGTH )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_createInverseTransformTokens(const unsigned char*, char, char*, char*)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1661:83: note: length computed here 1661 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1688:75: note: length computed here 1688 | strncpy(elemTok2, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:1677:75: note: length computed here 1677 | strncpy(elemTok1, reinterpret_cast( buffer ), strlen(reinterpret_cast( buffer )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘int starch::UNSTARCH_extractDataWithGzip(FILE**, FILE*, const char*, const Metadata*, uint64_t, Boolean)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:208:32: note: length computed here 208 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c: In function ‘char* starch::UNSTARCH_observedSignatureForChromosome(FILE**, const Metadata*, uint64_t, const char*, CompressionType)’: ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/unstarchHelpers.c:2569:40: note: length computed here 2569 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf ))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. SortDetails.cpp: In function ‘ChromBedData* initializeChromBedData(char*, double*)’: SortDetails.cpp:250:12: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 250 | strncpy(chrom->chromName, chromBuf, chromBufLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SortDetails.cpp:249:25: note: length computed here 249 | chromBufLen = strlen(chromBuf); // we know >= 1 | ~~~~~~^~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_createTransformTokensForHeaderlessInput(const char*, char, char**, int64_t*, int64_t*, char**)’: ../../../../interfaces/src/data/starch/starchHelpers.c:560:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:560:83: note: length computed here 560 | strncpy(*chr, reinterpret_cast( buffer ), strlen(buffer) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH_transformInput(Metadata**, const FILE*, CompressionType, const char*, const char*)’: ../../../../interfaces/src/data/starch/starchHelpers.c:964:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:964:98: note: length computed here 964 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ SortDetails.cpp: In function ‘void lexSortBedData(BedData*)’: SortDetails.cpp:1343:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1343 | strncpy(chromBuf, beds->chroms[i]->chromName, chromBufLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SortDetails.cpp:1342:33: note: length computed here 1342 | chromBufLen = strlen(beds->chroms[i]->chromName); // we know >= 1 | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c: In function ‘int starch::STARCH2_transformHeaderedBEDInput(const FILE*, Metadata**, CompressionType, const char*, const char*, Boolean, Boolean, Bed::LineCountType)’: ../../../../interfaces/src/data/starch/starchHelpers.c:2464:28: warning: ‘char* strncat(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchHelpers.c:2464:98: note: length computed here 2464 | strncat(nonCoordLineBuf, reinterpret_cast( chromosome ), strlen(chromosome) + 1); | ~~~~~~^~~~~~~~~~~~ In function ‘ChromBedData* initializeChromBedData(char*, double*)’, inlined from ‘int processData(const char**, unsigned int, double, char*, bool, bool)’ at SortDetails.cpp:909:59: SortDetails.cpp:250:12: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 250 | strncpy(chrom->chromName, chromBuf, chromBufLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SortDetails.cpp:249:25: note: length computed here 249 | chromBufLen = strlen(chromBuf); // we know >= 1 | ~~~~~~^~~~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator& Bed::bed_check_iterator::operator++() [with BedType = Bed::BasicCoords; long unsigned int SZ = 512]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:261:36, inlined from ‘BedOperations::BedPadReader::BedType* BedOperations::BedPadReader::ReadLine() [with IterType = Bed::bed_check_iterator*, 512>]’ at BedPadReader.hpp:140:11, inlined from ‘void BedOperations::nextPartitionGroup(BedFiles&, PQueue&) [with BedFiles = std::vector*, 512> >*, std::allocator*, 512> >*> >; PQueue = std::priority_queue*, std::vector*>, Bed::InvertGenomicAddressCompare, Bed::BasicCoords > >]’ at Bedops.cpp:1411:39: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 Sort.cpp -o objects-typical/Sort.o -iquote../../../../interfaces/general-headers mkdir -p objects-typical && g++ -c -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -pedantic -ansi -O3 -std=c++11 CheckSort.cpp -o objects-typical/CheckSort.o -iquote../../../../interfaces/general-headers mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_JSONMetadataExists(FILE**, const char*)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1089:20: warning: comparison is always true due to limited range of data type [-Wtype-limits] 1089 | } while (currC != EOF); | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1090:63: warning: comparison is always false due to limited range of data type [-Wtype-limits] 1090 | if ((nReadBytes == STARCH_LEGACY_METADATA_SIZE) || (currC == EOF)) { | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readJSONMetadata(json_t**, FILE**, const char*, Metadata**, CompressionType*, ArchiveVersion**, char**, char**, uint64_t*, Boolean*, Boolean, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:1306:24: warning: comparison is always true due to limited range of data type [-Wtype-limits] 1306 | } while (currC != EOF); | ^ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_updateMetadataForChromosome(Metadata**, char*, char*, uint64_t, Bed::LineCountType, Bed::BaseCountType, Bed::BaseCountType, Boolean, Boolean, char*, Bed::LineLengthType)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:20: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:311:47: note: length computed here 311 | strncpy(iter->filename, fn, strlen(fn) + 1); | ~~~~~~^~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:330:59: note: length computed here 330 | strncpy(iter->signature, signature, strlen(signature) + 1); | ~~~~~~^~~~~~~~~~~ In file included from ../../../../interfaces/general-headers/algorithm/bed/FindBedRange.hpp:32, from ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:41, from CheckSort.cpp:28: ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:38:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 38 | : public std::binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from CheckSort.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:52:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 52 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:77:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 77 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:88:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 88 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:101:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 101 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:165:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 165 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:242:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 242 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:254:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 254 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:264:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 264 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:274:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 274 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:284:19: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 284 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:294:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 294 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCompare.hpp:302:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 302 | : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c: In function ‘int starch::STARCH_readLegacyMetadata(const char*, Metadata**, CompressionType*, ArchiveVersion**, uint64_t*, Boolean*, Boolean)’: ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:32: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/src/data/starch/starchMetadataHelpers.c:2221:57: note: length computed here 2221 | strncpy(recTokBuf, token, strlen(token) + 1); | ~~~~~~^~~~~~~ In file included from ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:44: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::listJSONMetadata(FILE*, FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1226:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1226 | static_cast( getArchiveType() ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1230:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1230 | static_cast( getArchiveHeaderFlag() ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1231:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1231 | static_cast( getArchiveShowNewlineFlag() )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::extractAllData(const std::string&, FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:2003:51: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2003 | static_cast( getArchiveHeaderFlag() )) != 0 ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:2014:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2014 | static_cast( getArchiveHeaderFlag() )) != 0 ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp: In instantiation of ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’: CheckSort.cpp:51:28: required from here 51 | pool.release(*start++); | ^~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:268:12: warning: implicitly-declared ‘Bed::bed_check_iterator*, 16>::bed_check_iterator(const Bed::bed_check_iterator*, 16>&)’ is deprecated [-Wdeprecated-copy] 268 | auto __tmp = *this; | ^~~~~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:308:10: note: because ‘Bed::bed_check_iterator*, 16>’ has user-provided ‘bool Bed::bed_check_iterator::operator=(const Bed::bed_check_iterator&) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ 308 | bool operator=(const bed_check_iterator& b); | ^~~~~~~~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:295:14: warning: implicitly-declared ‘Bed::bed_check_iterator*, 16>::bed_check_iterator(const Bed::bed_check_iterator*, 16>&)’ is deprecated [-Wdeprecated-copy] 295 | return __tmp; | ^~~~~ ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:308:10: note: because ‘Bed::bed_check_iterator*, 16>’ has user-provided ‘bool Bed::bed_check_iterator::operator=(const Bed::bed_check_iterator&) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ 308 | bool operator=(const bed_check_iterator& b); | ^~~~~~~~ mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -iquote../../../.. In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator& Bed::bed_check_iterator::operator++() [with BedType = Bed::BasicCoords; long unsigned int SZ = 512]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:261:36, inlined from ‘BedOperations::BedPadReader::BedType* BedOperations::BedPadReader::ReadLine() [with IterType = Bed::bed_check_iterator*, 512>]’ at BedPadReader.hpp:140:11, inlined from ‘void BedOperations::nextPartitionGroup(BedFiles&, PQueue&) [with BedFiles = std::vector*, 512> >*, std::allocator*, 512> >*> >; PQueue = std::priority_queue*, std::vector*, std::allocator*> >, Bed::InvertGenomicAddressCompare, Bed::BasicCoords > >]’ at Bedops.cpp:1411:39: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ mkdir -p objects g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -iquote../../../.. mkdir -p ../bin cp starchcluster_gnuParallel.tcsh ../bin/starchcluster_gnuParallel-typical mkdir -p ../bin cp starchcluster_sge.tcsh ../bin/starchcluster_sge-typical mkdir -p ../bin cp starchcluster_slurm.tcsh ../bin/starchcluster_slurm-typical mkdir -p ../bin cp starch-diff.py ../bin/starch-diff-typical mkdir -p ../lib ar rcs ../lib/libstarch.a objects/starchConstants.o objects/unstarchHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/starchFileHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../bin g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starch.c -o objects/starch.o -iquote../../../../interfaces/general-headers -iquote../../../.. starch.c: In function ‘int main(int, char**)’: starch.c:106:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 106 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:121:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 121 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:123:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 123 | static_cast( kStarchFinalizeTransformTrue ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:146:40: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 146 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:161:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 161 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:163:50: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 163 | static_cast( kStarchFinalizeTransformTrue ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:191:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 191 | static_cast( type ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:194:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 194 | static_cast( bedGeneratePerChrSignatureFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:195:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 195 | static_cast( bedHeaderFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:196:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 196 | static_cast( bedReportProgressFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starch.c:197:36: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 197 | static_cast( bedReportProgressN )) != STARCH_EXIT_SUCCESS) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starch.o -o ../bin/starch-typical ../lib/libstarch.a -ljansson -lz -lbz2 mkdir -p ../bin g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c unstarch.c -o objects/unstarch.o -iquote../../../../interfaces/general-headers -iquote../../../.. unstarch.c: In function ‘int main(int, char**)’: unstarch.c:401:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 401 | static_cast( metadataOffset ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:402:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 402 | static_cast( headerFlag )) != 0) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:422:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 422 | static_cast( metadataOffset ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:423:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 423 | static_cast( headerFlag )) != 0) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:452:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 452 | static_cast( sizeof(starchRevision2HeaderBytes) ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:453:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 453 | static_cast( headerFlag )) != 0) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:473:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 473 | static_cast( sizeof(starchRevision2HeaderBytes) ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:474:58: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 474 | static_cast( headerFlag )) != 0) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:567:39: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 567 | UNSTARCH_printCompressionType(static_cast( type )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:798:78: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 798 | static_cast( sizeof(starchRevision2HeaderBytes) ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:809:82: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 809 | static_cast( sizeof(starchRevision2HeaderBytes) ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c: In function ‘void starch::UNSTARCH_printMetadataSha1Signature(unsigned char*)’: unstarch.c:1334:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1334 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ unstarch.c:1336:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1336 | static_cast( sha1BufferLength )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/unstarch.o -o ../bin/unstarch-typical ../lib/libstarch.a -ljansson -lz -lbz2 mkdir -p ../bin g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchcat.c -o objects/starchcat.o -iquote../../../../interfaces/general-headers -iquote../../../.. In file included from /usr/include/c++/14/cassert:44, from starchcat.c:33: starchcat.c: In function ‘int main(int, char**)’: starchcat.c:136:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 136 | assert( STARCHCAT_allocMetadataRecords ( &mdRecords, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:137:75: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 137 | assert( STARCHCAT_allocMetadataJSONObjects ( &metadataJSONs, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:138:87: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 138 | assert( STARCHCAT_buildMetadataRecords ( &metadataJSONs, &mdRecords, static_cast( firstArgc ), static_cast( argc ), const_cast( argv ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:138:133: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 138 | assert( STARCHCAT_buildMetadataRecords ( &metadataJSONs, &mdRecords, static_cast( firstArgc ), static_cast( argc ), const_cast( argv ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:139:75: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 139 | assert( STARCHCAT_checkMetadataJSONVersions ( &metadataJSONs, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:140:145: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 140 | assert( STARCHCAT_buildUniqueChromosomeList ( &chromosomes, &numChromosomes, reinterpret_cast( mdRecords ), static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:141:69: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 141 | assert( STARCHCAT_allocChromosomeSummary ( &summary, static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:142:124: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 142 | assert( STARCHCAT_buildChromosomeSummary ( &summary, reinterpret_cast( mdRecords ), static_cast( numRecords ), const_cast( chromosomes ), static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:142:213: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 142 | assert( STARCHCAT_buildChromosomeSummary ( &summary, reinterpret_cast( mdRecords ), static_cast( numRecords ), const_cast( chromosomes ), static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:143:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 143 | assert( STARCHCAT_allocChromosomeSummaries ( &summaries, static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:144:127: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 144 | assert( STARCHCAT_buildChromosomeSummaries ( &summaries, reinterpret_cast( summary ), static_cast( numChromosomes ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:164:61: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 164 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:178:61: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 178 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:223:60: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 223 | assert( STARCHCAT_freeMetadataRecords( &mdRecords, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:233:68: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 233 | assert (STARCHCAT_freeMetadataJSONObjects( &metadataJSONs, static_cast( numRecords ) ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_rewriteInputRecordToOutput(Metadata**, const char*, CompressionType, const char*, const MetadataRecord*, size_t*, Boolean, Boolean, Bed::LineCountType)’: starchcat.c:1338:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1338 | UNSTARCH_reverseTransformCoordinates( static_cast( t_lineIdx ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:1806:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 1806 | UNSTARCH_reverseTransformCoordinates( static_cast( t_lineIdx ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT_rewriteInputRecordToOutput(Metadata**, const char*, CompressionType, const char*, const MetadataRecord*)’: starchcat.c:2450:25: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2450 | static_cast( inRec->mdOffset ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2451:25: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2451 | static_cast( inRec->hFlag )) != 0 ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2471:28: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2471 | static_cast( inRec->mdOffset ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2472:28: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2472 | static_cast( inRec->hFlag )) != 0 ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2509:23: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2509 | static_cast( outType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:2511:23: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 2511 | static_cast( kStarchFinalizeTransformFalse ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_mergeInputRecordsToOutput(const char*, Metadata**, const char*, CompressionType, const ChromosomeSummary*, size_t*)’: starchcat.c:3152:54: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 3152 | if (STARCHCAT2_setupBzip2InputStream(static_cast( inRecIdx ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:3316:69: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 3316 | static_cast( summary->numRecords ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:3455:77: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 3455 | static_cast( flushZStreamFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT_mergeInputRecordsToOutput(Metadata**, const char*, CompressionType, const ChromosomeSummary*)’: starchcat.c:4265:43: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4265 | static_cast( outType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:4267:43: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4267 | static_cast( kStarchFinalizeTransformFalse ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT_mergeChromosomeStreams(const ChromosomeSummaries*, CompressionType, const char*)’: starchcat.c:4402:60: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4402 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:4420:63: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4420 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:4447:57: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4447 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:4479:39: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4479 | static_cast( hFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT_freeChromosomeSummaries(ChromosomeSummaries**)’: starchcat.c:4541:62: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 4541 | STARCHCAT_freeChromosomeSummary( &((*chrSums)->summary), static_cast( (*chrSums)->numChromosomes )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_mergeChromosomeStreams(const ChromosomeSummaries*, CompressionType, const char*, size_t*, Boolean, Boolean, Bed::LineCountType)’: starchcat.c:5908:61: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 5908 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:5935:64: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 5935 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:5958:64: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 5958 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:5996:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 5996 | static_cast( outputType ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:6031:38: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 6031 | static_cast( hFlag ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:6059:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 6059 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:6061:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 6061 | static_cast( STARCH2_MD_FOOTER_SHA1_LENGTH )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_fillExtractionBufferFromBzip2Stream(Boolean*, char*, char*, size_t*, BZFILE**, size_t*, char*, size_t*, TransformState*)’: starchcat.c:6726:55: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 6726 | UNSTARCH_reverseTransformCoordinates( static_cast( *t_lineIdxPtr ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_fillExtractionBufferFromGzipStream(Boolean*, FILE**, char*, char*, size_t*, z_stream*, size_t*, char**, size_t*, TransformState*)’: starchcat.c:7067:59: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 7067 | UNSTARCH_reverseTransformCoordinates( static_cast( *t_lineIdxPtr ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_transformCompressionBuffer(const char*, char*, TransformState*)’: starchcat.c:7435:25: warning: the address of ‘starch::transformState::r_chromosome’ will never be NULL [-Waddress] 7435 | if ((!retransState->r_chromosome) || (strlen(retransState->r_chromosome) == 0)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from starchcat.c:50: starchcat.h:107:30: note: ‘starch::transformState::r_chromosome’ declared here 107 | char r_chromosome[TOKEN_CHR_MAX_LENGTH]; | ^~~~~~~~~~~~ In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’, inlined from ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(std::string&)’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:634:52, inlined from ‘static bool starch::Starch::isStarch(std::string&)’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:698:56, inlined from ‘Bed::bed_check_iterator::bed_check_iterator(std::istream&, const std::string&, Ext::PooledMemory&, const std::string&, bool) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:92:90: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator::bed_check_iterator(std::istream&, const std::string&, Ext::PooledMemory&, const std::string&, bool) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:136:36: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ starchcat.c: In function ‘int starch::STARCHCAT2_mergeInputRecordsToOutput(const char*, Metadata**, const char*, CompressionType, const ChromosomeSummary*, size_t*)’: starchcat.c:3123:16: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 3123 | strncpy(transformStates[inRecIdx]->t_currentChromosome, inChr, strlen(inChr) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchcat.c:3123:78: note: length computed here 3123 | strncpy(transformStates[inRecIdx]->t_currentChromosome, inChr, strlen(inChr) + 1); | ~~~~~~^~~~~~~ In member function ‘void starch::Starch::setCurrentChromosome(char*)’, inlined from ‘const char* starch::Starch::getCurrentChromosome()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:718:130, inlined from ‘bool starch::Starch::isEOF()’ at ../../../../interfaces/general-headers/data/starch/starchApi.hpp:729:80, inlined from ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:292:36, inlined from ‘Bed::bed_check_iterator Bed::bed_check_iterator::operator++(int) [with BedType = Bed::BasicCoords; long unsigned int SZ = 16]’ at ../../../../interfaces/general-headers/data/bed/BedCheckIterator.hpp:267:24, inlined from ‘int checkSort(const char**, unsigned int)’ at CheckSort.cpp:51:28: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:887:55: note: length computed here 887 | strncpy(currentChromosome, _cC, strlen(_cC) + 1); | ~~~~~~^~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchcat.o -o ../bin/starchcat-typical ../lib/libstarch.a -ljansson -lz -lbz2 mkdir -p ../bin g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s -c starchstrip.c -o objects/starchstrip.o -iquote../../../../interfaces/general-headers -iquote../../../.. starchstrip.c: In function ‘void starch::STARCHSTRIP_write_updated_metadata(FILE*)’: starchstrip.c:124:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 124 | static_cast( STARCH2_MD_FOOTER_BASE64_ENCODED_SHA1_LENGTH ), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ starchstrip.c:126:13: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 126 | static_cast( STARCH2_MD_FOOTER_SHA1_LENGTH )); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../bin && cp update-sort-bed-slurm.py ../bin/update-sort-bed-slurm-typical mkdir -p ../bin && cp update-sort-bed-starch-slurm.py ../bin/update-sort-bed-starch-slurm-typical mkdir -p ../bin && cp update-sort-bed-migrate-candidates.py ../bin/update-sort-bed-migrate-candidates-typical mkdir -p ../bin && g++ -o ../bin/sort-bed-typical -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -s -Wall -Wextra -pedantic -ansi -O3 -std=c++11 -iquote../../../../interfaces/general-headers objects-typical/starchConstants.o objects-typical/starchFileHelpers.o objects-typical/starchHelpers.o objects-typical/starchMetadataHelpers.o objects-typical/unstarchHelpers.o objects-typical/starchSha1Digest.o objects-typical/starchBase64Coding.o objects-typical/SortDetails.o objects-typical/Sort.o objects-typical/CheckSort.o -ljansson -lz -lbz2 g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bedops-2.4.42+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -s objects/starchstrip.o -o ../bin/starchstrip-typical ../lib/libstarch.a -ljansson -lz -lbz2 rm -rf objects make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/starch/src' rm -rf objects-typical make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/sort-bed/src' rm -rf objects_typical make[4]: Leaving directory '/build/reproducible-path/bedops-2.4.42+dfsg/applications/bed/bedops/src' In file included from ../../../../interfaces/general-headers/data/bed/AllocateIterator_BED_starch_minmem.hpp:39: ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In static member function ‘static bool starch::Starch::hasStarchRevision1LegacyHeader(FILE*)’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:49: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:541:76: note: length computed here 541 | std::strncpy(_recTokBuf, _token, strlen(_token) + 1); | ~~~~~~^~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp: In member function ‘int starch::Starch::zReadLine()’: ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound depends on the length of the source argument [-Wstringop-truncation] 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../../interfaces/general-headers/data/starch/starchApi.hpp:1913:118: note: length computed here 1913 | strncpy(reinterpret_cast( zLineBuf ), reinterpret_cast( zRemainderBuf ), strlen(reinterpret_cast( zRemainderBuf )) + 1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ E: Build killed with signal TERM after 150 minutes of inactivity -------------------------------------------------------------------------------- Build finished at 2025-10-10T21:24:05Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup Fri, 10 Oct 2025 21:24:07 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died with exit 143) +------------------------------------------------------------------------------+ | Summary Fri, 10 Oct 2025 21:24:16 +0000 | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 28044 Build-Time: 9682 Distribution: unstable Fail-Stage: build Host Architecture: riscv64 Install-Time: 26 Job: /srv/rebuilderd/tmp/rebuilderdFbzz7K/inputs/bedops_2.4.42+dfsg-1.dsc Machine Architecture: riscv64 Package: bedops Package-Time: 9772 Source-Version: 2.4.42+dfsg-1 Space: 28044 Status: attempted Version: 2.4.42+dfsg-1 -------------------------------------------------------------------------------- Finished at 2025-10-10T21:24:05Z Build needed 02:42:52, 28044k disk space E: Build failure (dpkg-buildpackage died with exit 143) sbuild failed