=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdC1G8eV/inputs/python-pysam_0.23.3+ds-2_riscv64.buildinfo Source: python-pysam Version: 0.23.3+ds-2 rebuilderd-worker node: riscv64-06 +------------------------------------------------------------------------------+ | Downloading sources Sat, 15 Nov 2025 09:16:34 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [60.5 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [148 kB] Get:7 https://deb.debian.org/debian sid InRelease [176 kB] Get:8 https://deb.debian.org/debian experimental InRelease [82.8 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6536 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [93.0 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/non-free-firmware Sources [1796 B] Get:15 https://deb.debian.org/debian trixie-proposed-updates/main Sources [171 kB] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [85.6 kB] Get:17 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [1052 B] Get:18 https://deb.debian.org/debian forky/non-free-firmware Sources [7112 B] Get:19 https://deb.debian.org/debian forky/main Sources [10.7 MB] Get:20 https://deb.debian.org/debian sid/main Sources [11.2 MB] Get:21 https://deb.debian.org/debian sid/non-free-firmware Sources [9384 B] Get:22 https://deb.debian.org/debian experimental/main Sources [357 kB] Get:23 https://deb.debian.org/debian experimental/non-free-firmware Sources [3332 B] Fetched 33.9 MB in 23s (1486 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds-2.dsc' python-pysam_0.23.3+ds-2.dsc 2563 SHA256:f3b0fd2ac35e45fe9feeaf0042539d3d2c35f7ffe158774692f641828b9e4947 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds.orig.tar.xz' python-pysam_0.23.3+ds.orig.tar.xz 1504032 SHA256:2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 'https://deb.debian.org/debian/pool/main/p/python-pysam/python-pysam_0.23.3%2bds-2.debian.tar.xz' python-pysam_0.23.3+ds-2.debian.tar.xz 10808 SHA256:27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 python-pysam_0.23.3+ds.orig.tar.xz 27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 python-pysam_0.23.3+ds-2.debian.tar.xz f3b0fd2ac35e45fe9feeaf0042539d3d2c35f7ffe158774692f641828b9e4947 python-pysam_0.23.3+ds-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sat, 15 Nov 2025 09:17:02 +0000 | +------------------------------------------------------------------------------+ Rebuilding python-pysam=0.23.3+ds-2 in /srv/rebuilderd/tmp/rebuilderdC1G8eV/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdC1G8eV/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdC1G8eV/inputs/python-pysam_0.23.3+ds-2_riscv64.buildinfo /srv/rebuilderd/tmp/rebuilderdC1G8eV/inputs/python-pysam_0.23.3+ds-2_riscv64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/python-pysam-0.23.3+ds I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [176 kB] Get:2 http://snapshot.debian.org/archive/debian/20251114T142839Z forky InRelease [148 kB] Get:3 http://deb.debian.org/debian unstable/main riscv64 Packages [9847 kB] Get:4 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 Packages [9387 kB] Fetched 19.6 MB in 13s (1484 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20251114T142839Z/dists/forky/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main riscv64 libubsan1 riscv64 15.2.0-7 [1177 kB] Fetched 1177 kB in 0s (9430 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpquigzy3n/libubsan1_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 ncurses-base all 6.5+20250216-2 [273 kB] Fetched 273 kB in 0s (3713 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp65k4e4_0/ncurses-base_6.5+20250216-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3.13-dev riscv64 3.13.9-1 [508 kB] Fetched 508 kB in 0s (5670 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5zrat268/python3.13-dev_3.13.9-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcap2 riscv64 1:2.75-10+b1 [29.3 kB] Fetched 29.3 kB in 0s (499 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.75-10+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpe_el54q4/libcap2_2.75-10+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libaudit1 riscv64 1:4.1.2-1 [58.2 kB] Fetched 58.2 kB in 0s (979 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpmu8gj6a0/libaudit1_4.1.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libldap2 riscv64 2.6.10+dfsg-1 [197 kB] Fetched 197 kB in 0s (2934 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp88mqdf1z/libldap2_2.6.10+dfsg-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-riscv64-linux-gnu riscv64 4:15.2.0-4 [1432 B] Fetched 1432 B in 0s (25.3 kB/s) dpkg-name: info: moved 'gcc-riscv64-linux-gnu_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpsblmvmvs/gcc-riscv64-linux-gnu_15.2.0-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 perl riscv64 5.40.1-6 [267 kB] Fetched 267 kB in 0s (3753 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4j1ceue5/perl_5.40.1-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgnutls30t64 riscv64 3.8.10-3 [1465 kB] Fetched 1465 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1_cc1bkf/libgnutls30t64_3.8.10-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libngtcp2-crypto-gnutls-dev riscv64 1.16.0-1 [43.5 kB] Fetched 43.5 kB in 0s (737 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3do1aj94/libngtcp2-crypto-gnutls-dev_1.16.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-typeguard all 4.4.4-1 [37.1 kB] Fetched 37.1 kB in 0s (640 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrn5ozi2/python3-typeguard_4.4.4-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dwz riscv64 0.16-2 [115 kB] Fetched 115 kB in 0s (1847 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpra_and1h/dwz_0.16-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libbrotli1 riscv64 1.1.0-2+b7 [358 kB] Fetched 358 kB in 0s (4676 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpag4bmf5b/libbrotli1_1.1.0-2+b7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 coreutils riscv64 9.7-3 [3036 kB] Fetched 3036 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpusiw9unp/coreutils_9.7-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 diffutils riscv64 1:3.12-1 [405 kB] Fetched 405 kB in 0s (4618 kB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp6ex2114s/diffutils_3.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 ncurses-bin riscv64 6.5+20250216-2 [436 kB] Fetched 436 kB in 0s (5409 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj7kgkb6v/ncurses-bin_6.5+20250216-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtinfo6 riscv64 6.5+20250216-2 [347 kB] Fetched 347 kB in 0s (4596 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgzjyw95p/libtinfo6_6.5+20250216-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblsan0 riscv64 15.2.0-7 [1326 kB] Fetched 1326 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7i1fp207/liblsan0_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB] Fetched 978 kB in 0s (8921 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmp_lkgt0pr/zlib1g-dev_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 make riscv64 4.4.1-3 [463 kB] Fetched 463 kB in 0s (5425 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp74r_2axr/make_4.4.1-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libngtcp2-crypto-gnutls8 riscv64 1.16.0-1 [25.3 kB] Fetched 25.3 kB in 0s (443 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuh0xhm5i/libngtcp2-crypto-gnutls8_1.16.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 readline-common all 8.3-3 [74.8 kB] Fetched 74.8 kB in 0s (1233 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpusbx_2zz/readline-common_8.3-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3.13 riscv64 3.13.9-1 [764 kB] Fetched 764 kB in 0s (7716 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpstiup65e/python3.13_3.13.9-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debconf all 1.5.91 [121 kB] Fetched 121 kB in 0s (1884 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrvaal3b/debconf_1.5.91_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libgssrpc4t64 riscv64 1.21.3-5 [60.7 kB] Fetched 60.7 kB in 0s (1017 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp67kccjgj/libgssrpc4t64_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgnutls-openssl27t64 riscv64 3.8.10-3 [456 kB] Fetched 456 kB in 0s (5617 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp95rs8sb3/libgnutls-openssl27t64_3.8.10-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 hostname riscv64 3.25 [10.7 kB] Fetched 10.7 kB in 0s (186 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmperak2khd/hostname_3.25_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libldap-dev riscv64 2.6.10+dfsg-1 [584 kB] Fetched 584 kB in 0s (6590 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9qvo0ely/libldap-dev_2.6.10+dfsg-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Fetched 3019 kB in 0s (13.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppxb8aib4/perl-modules-5.40_5.40.1-6_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pytest all 8.4.2-1 [266 kB] Fetched 266 kB in 0s (3672 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamy_v0nz/python3-pytest_8.4.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libreadline8t64 riscv64 8.3-3 [181 kB] Fetched 181 kB in 0s (2701 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpje4hi7yo/libreadline8t64_8.3-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bsdextrautils riscv64 2.41.2-4 [102 kB] Fetched 102 kB in 0s (1629 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpazkxc0z4/bsdextrautils_2.41.2-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libctf-nobfd0 riscv64 2.45-8 [163 kB] Fetched 163 kB in 0s (2527 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_2wcfdhc/libctf-nobfd0_2.45-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libp11-kit0 riscv64 0.25.9-2 [449 kB] Fetched 449 kB in 0s (5593 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpysal9vy8/libp11-kit0_0.25.9-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3-dev riscv64 3.13.7-1 [10.5 kB] Fetched 10.5 kB in 0s (182 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe4yii6hc/libpython3-dev_3.13.7-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-10 [719 kB] Fetched 719 kB in 0s (7558 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqfb9our8/libdb5.3t64_5.3.28+dfsg2-10_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmpc3 riscv64 1.3.1-2 [56.4 kB] Fetched 56.4 kB in 0s (935 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwh93ihy0/libmpc3_1.3.1-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsqlite3-0 riscv64 3.46.1-8 [910 kB] Fetched 910 kB in 0s (8557 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo3vj2nwl/libsqlite3-0_3.46.1-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dpkg-dev all 1.22.21 [1338 kB] Fetched 1338 kB in 0s (10.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkppw6e2w/dpkg-dev_1.22.21_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 openssl-provider-legacy riscv64 3.5.4-1 [310 kB] Fetched 310 kB in 0s (4210 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq3bjb0ui/openssl-provider-legacy_3.5.4-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgcc-s1 riscv64 15.2.0-7 [61.5 kB] Fetched 61.5 kB in 0s (1032 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz5to_hxt/libgcc-s1_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpipeline1 riscv64 1.5.8-1 [40.3 kB] Fetched 40.3 kB in 0s (655 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxe6_epca/libpipeline1_1.5.8-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam-modules riscv64 1.7.0-5 [177 kB] Fetched 177 kB in 0s (2648 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi1tor20a/libpam-modules_1.7.0-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (209 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ii1lcop/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gettext riscv64 0.23.2-1 [1684 kB] Fetched 1684 kB in 0s (11.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn11il425/gettext_0.23.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-10 [20.2 kB] Fetched 20.2 kB in 0s (353 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1hk1zamw/libsasl2-modules-db_2.1.28+dfsg1-10_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam-modules-bin riscv64 1.7.0-5 [49.3 kB] Fetched 49.3 kB in 0s (849 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxnecirnu/libpam-modules-bin_1.7.0-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_sjs39y/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-15-riscv64-linux-gnu riscv64 15.2.0-7 [28.7 MB] Fetched 28.7 MB in 2s (17.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxsuwdepg/gcc-15-riscv64-linux-gnu_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libselinux1 riscv64 3.9-2 [88.5 kB] Fetched 88.5 kB in 0s (1468 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf78zvqa1/libselinux1_3.9-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (198 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2i6qr9s6/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libffi8 riscv64 3.5.2-2 [21.8 kB] Fetched 21.8 kB in 0s (386 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk9_frjz0/libffi8_3.5.2-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libkdb5-10t64 riscv64 1.21.3-5 [43.4 kB] Fetched 43.4 kB in 0s (752 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8zclbaqy/libkdb5-10t64_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libblkid1 riscv64 2.41.2-4 [193 kB] Fetched 193 kB in 0s (2937 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu7s6jxf4/libblkid1_2.41.2-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam0g riscv64 1.7.0-5 [70.2 kB] Fetched 70.2 kB in 0s (1190 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzv101nsd/libpam0g_1.7.0-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 patch riscv64 2.8-2 [134 kB] Fetched 134 kB in 0s (2145 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ux36qg3/patch_2.8-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsystemd0 riscv64 258.1-2 [477 kB] Fetched 477 kB in 0s (5779 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2nzwtqk5/libsystemd0_258.1-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cython3 riscv64 3.1.6+dfsg-2 [2308 kB] Fetched 2308 kB in 1s (2703 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo8ddq80d/cython3_3.1.6+dfsg-2_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 krb5-multidev riscv64 1.21.3-5 [126 kB] Fetched 126 kB in 0s (1833 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxz7up782/krb5-multidev_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libssl3t64 riscv64 3.5.4-1 [2206 kB] Fetched 2206 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvh42b8gc/libssl3t64_3.5.4-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libp11-kit-dev riscv64 0.25.9-2 [220 kB] Fetched 220 kB in 0s (3041 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpycmdacav/libp11-kit-dev_0.25.9-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 base-passwd riscv64 3.6.8 [54.8 kB] Fetched 54.8 kB in 0s (927 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57cvb8jy/base-passwd_3.6.8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libbz2-dev riscv64 1.0.8-6 [69.9 kB] Fetched 69.9 kB in 0s (1154 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu1rbqdg8/libbz2-dev_1.0.8-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 tabix riscv64 1.22.1+ds2-1 [518 kB] Fetched 518 kB in 1s (640 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb73dvok1/tabix_1.22.1+ds2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 perl-base riscv64 5.40.1-6 [1662 kB] Fetched 1662 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjgvbygg9/perl-base_5.40.1-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcom-err2 riscv64 1.47.2-3+b3 [24.7 kB] Fetched 24.7 kB in 0s (430 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp63tnpx5t/libcom-err2_1.47.2-3+b3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 linux-libc-dev all 6.17.7-2 [2535 kB] Fetched 2535 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqlt8j8t2/linux-libc-dev_6.17.7-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-15-base riscv64 15.2.0-7 [53.3 kB] Fetched 53.3 kB in 0s (854 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx5h2ar8b/gcc-15-base_15.2.0-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libgssapi-krb5-2 riscv64 1.21.3-5 [143 kB] Fetched 143 kB in 0s (2253 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn309imw8/libgssapi-krb5-2_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtsan2 riscv64 15.2.0-7 [2653 kB] Fetched 2653 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0_4u9u9s/libtsan2_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libexpat1 riscv64 2.7.3-1 [106 kB] Fetched 106 kB in 0s (1667 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnjwfbmko/libexpat1_2.7.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libuchardet0 riscv64 0.0.8-2 [68.3 kB] Fetched 68.3 kB in 0s (1136 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxw6otkob/libuchardet0_0.0.8-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsmartcols1 riscv64 2.41.2-4 [155 kB] Fetched 155 kB in 0s (2429 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsuw_5l4v/libsmartcols1_2.41.2-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 findutils riscv64 4.10.0-3 [706 kB] Fetched 706 kB in 0s (7471 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_7afx2fj/findutils_4.10.0-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 m4 riscv64 1.4.20-2 [323 kB] Fetched 323 kB in 0s (4430 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptd5e4cim/m4_1.4.20-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bash riscv64 5.3-1 [1560 kB] Fetched 1560 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpte51nkak/bash_5.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgmp-dev riscv64 2:6.3.0+dfsg-5 [1024 kB] Fetched 1024 kB in 0s (9067 kB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmph3hns5w6/libgmp-dev_6.3.0+dfsg-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (202 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptmobr2ge/netbase_6.5_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (536 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnokwcw4r/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 8276 B in 0s (147 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplyie2uv1/python3-jaraco.context_6.0.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libelf1t64 riscv64 0.194-1 [190 kB] Fetched 190 kB in 0s (2862 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprxviw_ct/libelf1t64_0.194-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libattr1 riscv64 1:2.5.2-3 [22.9 kB] Fetched 22.9 kB in 0s (389 kB/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-3_riscv64.deb' to '/srv/rebuilderd/tmp/tmpocnd76tb/libattr1_2.5.2-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libhts-dev riscv64 1.22.1+ds2-1 [3174 kB] Fetched 3174 kB in 0s (13.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp46pc9gr1/libhts-dev_1.22.1+ds2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc-bin riscv64 2.41-12 [606 kB] Fetched 606 kB in 0s (6668 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdp1pzvos/libc-bin_2.41-12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3 riscv64 3.13.7-1 [28.3 kB] Fetched 28.3 kB in 0s (492 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqb7pon5/python3_3.13.7-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libevent-2.1-7t64 riscv64 2.1.12-stable-10+b1 [182 kB] Fetched 182 kB in 0s (2762 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy30k5a_8/libevent-2.1-7t64_2.1.12-stable-10+b1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libkrb5-3 riscv64 1.21.3-5 [334 kB] Fetched 334 kB in 0s (4544 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsp2szm2c/libkrb5-3_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp-15-riscv64-linux-gnu riscv64 15.2.0-7 [14.7 MB] Fetched 14.7 MB in 1s (16.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf4yx1s0s/cpp-15-riscv64-linux-gnu_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dpkg riscv64 1.22.21 [1542 kB] Fetched 1542 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprrwe5t7c/dpkg_1.22.21_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libncurses6 riscv64 6.5+20250216-2 [105 kB] Fetched 105 kB in 0s (1666 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_mh7t5b9/libncurses6_6.5+20250216-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 tar riscv64 1.35+dfsg-3.1 [822 kB] Fetched 822 kB in 0s (8088 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl2wgb9n6/tar_1.35+dfsg-3.1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3-all-dev riscv64 3.13.7-1 [1068 B] Fetched 1068 B in 0s (18.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx3w31t0o/libpython3-all-dev_3.13.7-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.13-stdlib riscv64 3.13.9-1 [1928 kB] Fetched 1928 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa5k0a91x/libpython3.13-stdlib_3.13.9-1_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libxml2-16 riscv64 2.15.1+dfsg-0.3 [637 kB] Fetched 637 kB in 0s (6940 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8wtmjlqu/libxml2-16_2.15.1+dfsg-0.3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libasan8 riscv64 15.2.0-7 [2939 kB] Fetched 2939 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ku4i69v/libasan8_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 grep riscv64 3.12-1 [442 kB] Fetched 442 kB in 0s (5531 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqdcx504v/grep_3.12-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 pkgconf-bin riscv64 1.8.1-4 [29.8 kB] Fetched 29.8 kB in 0s (484 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe45rz94l/pkgconf-bin_1.8.1-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libk5crypto3 riscv64 1.21.3-5 [100 kB] Fetched 100 kB in 0s (1611 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp504mkrv0/libk5crypto3_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtasn1-6 riscv64 4.20.0-2 [50.6 kB] Fetched 50.6 kB in 0s (868 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphlfsolvm/libtasn1-6_4.20.0-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (256 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpfsit6sty/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcrypt-dev riscv64 1:4.5.1-1 [262 kB] Fetched 262 kB in 0s (3725 kB/s) dpkg-name: info: moved 'libcrypt-dev_1%3a4.5.1-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpmoqvm1cz/libcrypt-dev_4.5.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-dev riscv64 3.13.7-1 [26.1 kB] Fetched 26.1 kB in 0s (424 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq_5srxdi/python3-dev_3.13.7-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdpkg-perl all 1.22.21 [650 kB] Fetched 650 kB in 0s (7003 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqa6obw_4/libdpkg-perl_1.22.21_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcap-ng0 riscv64 0.8.5-4+b1 [17.2 kB] Fetched 17.2 kB in 0s (301 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkb52swx1/libcap-ng0_0.8.5-4+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dash riscv64 0.5.12-12 [101 kB] Fetched 101 kB in 0s (1656 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn4r4303q/dash_0.5.12-12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 binutils-riscv64-linux-gnu riscv64 2.45-8 [891 kB] Fetched 891 kB in 0s (8426 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2r6mwtdc/binutils-riscv64-linux-gnu_2.45-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libidn2-dev riscv64 2.3.8-4 [135 kB] Fetched 135 kB in 0s (2078 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1rx4pg2m/libidn2-dev_2.3.8-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 tzdata all 2025b-5 [260 kB] Fetched 260 kB in 0s (3616 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyicb36_s/tzdata_2025b-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libkadm5srv-mit12 riscv64 1.21.3-5 [54.9 kB] Fetched 54.9 kB in 0s (940 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc9xb8le_/libkadm5srv-mit12_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (7628 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp03aondj9/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libkrb5-dev riscv64 1.21.3-5 [16.1 kB] Fetched 16.1 kB in 0s (284 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5d0zvtf_/libkrb5-dev_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debhelper all 13.28 [941 kB] Fetched 941 kB in 0s (8603 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy65m24lb/debhelper_13.28_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpkgconf3 riscv64 1.8.1-4 [36.0 kB] Fetched 36.0 kB in 0s (607 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjhzjktd7/libpkgconf3_1.8.1-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-all riscv64 3.13.7-1 [1048 B] Fetched 1048 B in 0s (18.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprkny7ozz/python3-all_3.13.7-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-all-dev riscv64 3.13.7-1 [1068 B] Fetched 1068 B in 0s (19.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkrhbz794/python3-all-dev_3.13.7-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgnutls-dane0t64 riscv64 3.8.10-3 [456 kB] Fetched 456 kB in 0s (5632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy_yhywfl/libgnutls-dane0t64_3.8.10-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 0s (3500 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj_0yzprl/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 samtools riscv64 1.22.1-1 [702 kB] Fetched 702 kB in 1s (840 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1lq13vud/samtools_1.22.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libhts3t64 riscv64 1.22.1+ds2-1 [479 kB] Fetched 479 kB in 0s (5829 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpal5023fo/libhts3t64_1.22.1+ds2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Fetched 92.4 kB in 0s (1484 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz38s36na/python3-typing-extensions_4.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-10 [60.6 kB] Fetched 60.6 kB in 0s (1019 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqzw_rpaq/libsasl2-2_2.1.28+dfsg1-10_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblzma5 riscv64 5.8.1-2 [312 kB] Fetched 312 kB in 0s (4223 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8_a75idd/liblzma5_5.8.1-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmagic1t64 riscv64 1:5.46-5 [117 kB] Fetched 117 kB in 0s (1745 kB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpf3xju7xh/libmagic1t64_5.46-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.13-dev riscv64 3.13.9-1 [16.7 MB] Fetched 16.7 MB in 1s (17.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnpmsjia7/libpython3.13-dev_3.13.9-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libssh2-1t64 riscv64 1.11.1-1 [249 kB] Fetched 249 kB in 0s (3547 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf95cae78/libssh2-1t64_1.11.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sed riscv64 4.9-2 [329 kB] Fetched 329 kB in 0s (4410 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprwd3f5js/sed_4.9-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libssh2-1-dev riscv64 1.11.1-1 [560 kB] Fetched 560 kB in 0s (6483 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzkhg6122/libssh2-1-dev_1.11.1-1_riscv64.deb' Downloading dependency 1 of 250: libubsan1:riscv64=15.2.0-7 Downloading dependency 2 of 250: ncurses-base:riscv64=6.5+20250216-2 Downloading dependency 3 of 250: python3.13-dev:riscv64=3.13.9-1 Downloading dependency 4 of 250: libcap2:riscv64=1:2.75-10+b1 Downloading dependency 5 of 250: libaudit1:riscv64=1:4.1.2-1 Downloading dependency 6 of 250: libldap2:riscv64=2.6.10+dfsg-1 Downloading dependency 7 of 250: gcc-riscv64-linux-gnu:riscv64=4:15.2.0-4 Downloading dependency 8 of 250: perl:riscv64=5.40.1-6 Downloading dependency 9 of 250: libgnutls30t64:riscv64=3.8.10-3 Downloading dependency 10 of 250: libngtcp2-crypto-gnutls-dev:riscv64=1.16.0-1 Downloading dependency 11 of 250: python3-typeguard:riscv64=4.4.4-1 Downloading dependency 12 of 250: dwz:riscv64=0.16-2 Downloading dependency 13 of 250: libbrotli1:riscv64=1.1.0-2+b7 Downloading dependency 14 of 250: coreutils:riscv64=9.7-3 Downloading dependency 15 of 250: diffutils:riscv64=1:3.12-1 Downloading dependency 16 of 250: 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Downloading dependency 124 of 250: libpython3.13-dev:riscv64=3.13.9-1 Downloading dependency 125 of 250: libssh2-1t64:riscv64=1.11.1-1 Downloading dependency 126 of 250: sed:riscv64=4.9-2 Downloading dependency 127 of 250: libssh2-1-dev:riscv64=1.11.1-1 Downloading dependency 128 of 250: libstdc++-15-dev:riscv64=15.2.0-7Get:1 http://deb.debian.org/debian unstable/main riscv64 libstdc++-15-dev riscv64 15.2.0-7 [6163 kB] Fetched 6163 kB in 0s (15.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnfyrfl5p/libstdc++-15-dev_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 autopoint all 0.23.2-1 [772 kB] Fetched 772 kB in 0s (7275 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwhgizwl_/autopoint_0.23.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libsframe2 riscv64 2.45-8 [80.8 kB] Fetched 80.8 kB in 0s (1320 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaq96kmtx/libsframe2_2.45-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libnghttp2-14 riscv64 1.64.0-1.1+b1 [78.1 kB] Fetched 78.1 kB in 0s (1289 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_shoe3nz/libnghttp2-14_1.64.0-1.1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 pkgconf riscv64 1.8.1-4 [26.1 kB] Fetched 26.1 kB in 0s (458 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9k6symeg/pkgconf_1.8.1-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pluggy all 1.6.0-1 [27.1 kB] Fetched 27.1 kB in 0s (475 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpexwad3l9/python3-pluggy_1.6.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 file riscv64 1:5.46-5 [43.4 kB] Fetched 43.4 kB in 0s (756 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpn_gnu48k/file_5.46-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3-stdlib riscv64 3.13.7-1 [10.2 kB] Fetched 10.2 kB in 0s (184 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp891xv5qe/libpython3-stdlib_3.13.7-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpsl5t64 riscv64 0.21.2-1.1+b1 [57.3 kB] Fetched 57.3 kB in 0s (989 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy_lgc7y6/libpsl5t64_0.21.2-1.1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgmpxx4ldbl riscv64 2:6.3.0+dfsg-5 [329 kB] Fetched 329 kB in 0s (4468 kB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmpwcj0i4tg/libgmpxx4ldbl_6.3.0+dfsg-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdeflate0 riscv64 1.23-2 [38.8 kB] Fetched 38.8 kB in 0s (631 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuf6m6a0s/libdeflate0_1.23-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 liblzma-dev riscv64 5.8.1-2 [504 kB] Fetched 504 kB in 0s (6016 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsxfnf5i8/liblzma-dev_5.8.1-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sysvinit-utils riscv64 3.15-5 [34.5 kB] Fetched 34.5 kB in 0s (589 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp57uj03g7/sysvinit-utils_3.15-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 man-db riscv64 2.13.1-1 [1458 kB] Fetched 1458 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo91ol8qv/man-db_2.13.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3.13-minimal riscv64 3.13.9-1 [2169 kB] Fetched 2169 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuzwa2kjk/python3.13-minimal_3.13.9-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (1169 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7pi122z4/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libitm1 riscv64 15.2.0-7 [25.5 kB] Fetched 25.5 kB in 0s (443 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo5ar5ms1/libitm1_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++-15 riscv64 15.2.0-7 [24.1 kB] Fetched 24.1 kB in 0s (367 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpww71nfqv/g++-15_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (359 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcpm8sab0/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libnghttp3-dev riscv64 1.12.0-1 [203 kB] Fetched 203 kB in 0s (2775 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsng_iji9/libnghttp3-dev_1.12.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libkeyutils1 riscv64 1.6.3-6 [9480 B] Fetched 9480 B in 0s (170 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_kgz0277/libkeyutils1_1.6.3-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-iniconfig all 2.1.0-1 [7432 B] Fetched 7432 B in 0s (132 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdn5637p6/python3-iniconfig_2.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libudev1 riscv64 258.1-2 [158 kB] Fetched 158 kB in 0s (2450 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpay712lo5/libudev1_258.1-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 rpcsvc-proto riscv64 1.4.3-1+b2 [62.3 kB] Fetched 62.3 kB in 0s (1049 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkusihv96/rpcsvc-proto_1.4.3-1+b2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-packaging all 25.0-1 [56.6 kB] Fetched 56.6 kB in 0s (948 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1z0uedm0/python3-packaging_25.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libhtscodecs2 riscv64 1.6.1-2 [74.7 kB] Fetched 74.7 kB in 0s (1257 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpry3a64e8/libhtscodecs2_1.6.1-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 xz-utils riscv64 5.8.1-2 [659 kB] Fetched 659 kB in 0s (7139 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb1ofjjcp/xz-utils_5.8.1-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp riscv64 4:15.2.0-4 [1572 B] Fetched 1572 B in 0s (25.3 kB/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpimbif6dn/cpp_15.2.0-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++-riscv64-linux-gnu riscv64 4:15.2.0-4 [1196 B] Fetched 1196 B in 0s (20.6 kB/s) dpkg-name: info: moved 'g++-riscv64-linux-gnu_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpguofnlpj/g++-riscv64-linux-gnu_15.2.0-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 debianutils riscv64 5.23.2 [91.7 kB] Fetched 91.7 kB in 0s (1494 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzzi8d6up/debianutils_5.23.2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dh-python all 6.20250414 [116 kB] Fetched 116 kB in 0s (1848 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpehzyzjt1/dh-python_6.20250414_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmd0 riscv64 1.1.0-2+b1 [37.6 kB] Fetched 37.6 kB in 0s (653 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb06bpesp/libmd0_1.1.0-2+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 po-debconf all 1.0.21+nmu1 [248 kB] Fetched 248 kB in 0s (3591 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw0b6g7e9/po-debconf_1.0.21+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 autotools-dev all 20240727.1 [60.2 kB] Fetched 60.2 kB in 0s (1032 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsoqaf0q6/autotools-dev_20240727.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bzip2 riscv64 1.0.8-6 [40.5 kB] Fetched 40.5 kB in 0s (687 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe0v3aytm/bzip2_1.0.8-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 librtmp-dev riscv64 2.4+20151223.gitfa8646d.1-3 [119 kB] Fetched 119 kB in 0s (1898 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpohj_usee/librtmp-dev_2.4+20151223.gitfa8646d.1-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpsl-dev riscv64 0.21.2-1.1+b1 [87.2 kB] Fetched 87.2 kB in 0s (1422 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaolzvn4g/libpsl-dev_0.21.2-1.1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libbz2-1.0 riscv64 1.0.8-6 [40.3 kB] Fetched 40.3 kB in 0s (702 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2aorpikt/libbz2-1.0_1.0.8-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 mawk riscv64 1.3.4.20250131-1 [142 kB] Fetched 142 kB in 0s (2221 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgqvzk5qc/mawk_1.3.4.20250131-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.13-minimal riscv64 3.13.9-1 [861 kB] Fetched 861 kB in 0s (8346 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpewc1h1z3/libpython3.13-minimal_3.13.9-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtool all 2.5.4-7 [540 kB] Fetched 540 kB in 0s (5980 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpny7jj5xs/libtool_2.5.4-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmagic-mgc riscv64 1:5.46-5 [338 kB] Fetched 338 kB in 0s (4466 kB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmp_p8loan2/libmagic-mgc_5.46-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gzip riscv64 1.13-1 [139 kB] Fetched 139 kB in 0s (2087 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgl7qzpo9/gzip_1.13-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc-dev-bin riscv64 2.41-12 [57.4 kB] Fetched 57.4 kB in 0s (951 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp69t7ikdd/libc-dev-bin_2.41-12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++ riscv64 4:15.2.0-4 [1332 B] Fetched 1332 B in 0s (24.0 kB/s) dpkg-name: info: moved 'g++_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmppbdjpuwv/g++_15.2.0-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc6-dev riscv64 2.41-12 [3127 kB] Fetched 3127 kB in 0s (13.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptvvjsce0/libc6-dev_2.41-12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 autoconf all 2.72-3.1 [494 kB] Fetched 494 kB in 0s (5823 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdyubj1ec/autoconf_2.72-3.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmount1 riscv64 2.41.2-4 [226 kB] Fetched 226 kB in 0s (3303 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4mnth38t/libmount1_2.41.2-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libngtcp2-dev riscv64 1.16.0-1 [452 kB] Fetched 452 kB in 0s (5569 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw6wt1ct8/libngtcp2-dev_1.16.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcurl3t64-gnutls riscv64 8.17.0-2 [406 kB] Fetched 406 kB in 0s (5239 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7lofri2_/libcurl3t64-gnutls_8.17.0-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc riscv64 4:15.2.0-4 [5156 B] Fetched 5156 B in 0s (90.0 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpsj80fetq/gcc_15.2.0-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libtasn1-6-dev riscv64 4.20.0-2 [149 kB] Fetched 149 kB in 0s (2314 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq1jde8dd/libtasn1-6-dev_4.20.0-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libunistring5 riscv64 1.3-2 [474 kB] Fetched 474 kB in 0s (5739 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbfqv_xea/libunistring5_1.3-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 nettle-dev riscv64 3.10.2-1 [1557 kB] Fetched 1557 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphdx95xnm/nettle-dev_3.10.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgcc-15-dev riscv64 15.2.0-7 [5653 kB] Fetched 5653 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp26gtizr/libgcc-15-dev_15.2.0-7_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libkadm5clnt-mit12 riscv64 1.21.3-5 [42.2 kB] Fetched 42.2 kB in 0s (710 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptzhho4lk/libkadm5clnt-mit12_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Fetched 836 kB in 0s (7806 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp48nf0rs6/python3-pygments_2.18.0+dfsg-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Fetched 85.7 kB in 0s (1362 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpflvehj5u/zlib1g_1.3.dfsg+really1.3.1-1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgprofng0 riscv64 2.45-8 [716 kB] Fetched 716 kB in 0s (7474 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc_uvzmms/libgprofng0_2.45-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpython3.13 riscv64 3.13.9-1 [2171 kB] Fetched 2171 kB in 0s (11.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo9bb2i86/libpython3.13_3.13.9-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-autocommand all 2.2.2-3 [13.6 kB] Fetched 13.6 kB in 0s (237 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5uz7rcso/python3-autocommand_2.2.2-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (190 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv3efgjq_/python3-zipp_3.23.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdeflate-dev riscv64 1.23-2 [80.1 kB] Fetched 80.1 kB in 0s (1346 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz0_kgaaj/libdeflate-dev_1.23-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libstdc++6 riscv64 15.2.0-7 [714 kB] Fetched 714 kB in 0s (7083 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptxac80wm/libstdc++6_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 build-essential riscv64 12.12 [4628 B] Fetched 4628 B in 0s (79.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf4z8_hpt/build-essential_12.12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdebhelper-perl all 13.28 [92.4 kB] Fetched 92.4 kB in 0s (1521 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvyu9r3u5/libdebhelper-perl_13.28_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgomp1 riscv64 15.2.0-7 [132 kB] Fetched 132 kB in 0s (1955 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2i330yi_/libgomp1_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libbinutils riscv64 2.45-8 [521 kB] Fetched 521 kB in 0s (5998 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpboxfotac/libbinutils_2.45-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libpcre2-8-0 riscv64 10.46-1 [301 kB] Fetched 301 kB in 0s (4105 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprocvl94j/libpcre2-8-0_10.46-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dh-autoreconf all 21 [12.2 kB] Fetched 12.2 kB in 0s (216 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiujyqy3n/dh-autoreconf_21_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-5 [558 kB] Fetched 558 kB in 0s (6341 kB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5_riscv64.deb' to '/srv/rebuilderd/tmp/tmp7bya9lao/libgmp10_6.3.0+dfsg-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libunbound8 riscv64 1.24.1-2 [616 kB] Fetched 616 kB in 0s (6791 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_6cojey5/libunbound8_1.24.1-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 base-files riscv64 14 [72.9 kB] Fetched 72.9 kB in 0s (1158 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpltnji321/base-files_14_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libdebconfclient0 riscv64 0.281 [10.6 kB] Fetched 10.6 kB in 0s (187 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqha27ccw/libdebconfclient0_0.281_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-minimal riscv64 3.13.7-1 [27.2 kB] Fetched 27.2 kB in 0s (471 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa8esm5i4/python3-minimal_3.13.7-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcrypt1 riscv64 1:4.5.1-1 [114 kB] Fetched 114 kB in 0s (1847 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1_riscv64.deb' to '/srv/rebuilderd/tmp/tmpzx0nke7k/libcrypt1_4.5.1-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libzstd-dev riscv64 1.5.7+dfsg-2 [1618 kB] Fetched 1618 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp39z37wce/libzstd-dev_1.5.7+dfsg-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 0s (555 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe3vrwxa2/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libacl1 riscv64 2.3.2-2+b1 [32.9 kB] Fetched 32.9 kB in 0s (567 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbx9tn_vw/libacl1_2.3.2-2+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 bcftools riscv64 1.22-1 [816 kB] Fetched 816 kB in 1s (956 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjseb24x4/bcftools_1.22-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 binutils riscv64 2.45-8 [269 kB] Fetched 269 kB in 0s (3804 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ltaeadm/binutils_2.45-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libmpfr6 riscv64 4.2.2-2 [664 kB] Fetched 664 kB in 0s (6976 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0a3v29c6/libmpfr6_4.2.2-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libc6 riscv64 2.41-12 [2472 kB] Fetched 2472 kB in 0s (12.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvlfmwxzq/libc6_2.41-12_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libnghttp2-dev riscv64 1.64.0-1.1+b1 [220 kB] Fetched 220 kB in 0s (3212 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqmf37prz/libnghttp2-dev_1.64.0-1.1+b1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgnutls28-dev riscv64 3.8.10-3 [2859 kB] Fetched 2859 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbnvmlr2r/libgnutls28-dev_3.8.10-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libssl-dev riscv64 3.5.4-1 [6304 kB] Fetched 6304 kB in 0s (15.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl1_srqei/libssl-dev_3.5.4-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 g++-15-riscv64-linux-gnu riscv64 15.2.0-7 [15.8 MB] Fetched 15.8 MB in 1s (17.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8zxv0o7k/g++-15-riscv64-linux-gnu_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libbrotli-dev riscv64 1.1.0-2+b7 [798 kB] Fetched 798 kB in 0s (7999 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmlju3_t3/libbrotli-dev_1.1.0-2+b7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcc1-0 riscv64 15.2.0-7 [40.2 kB] Fetched 40.2 kB in 0s (677 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmperhxg5ft/libcc1-0_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libctf0 riscv64 2.45-8 [96.0 kB] Fetched 96.0 kB in 0s (1561 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7wip6ogr/libctf0_2.45-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libngtcp2-16 riscv64 1.16.0-1 [141 kB] Fetched 141 kB in 0s (2163 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2q65kdcv/libngtcp2-16_1.16.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 comerr-dev riscv64 2.1-1.47.2-3+b3 [60.1 kB] Fetched 60.1 kB in 0s (953 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp19yx5ug0/comerr-dev_2.1-1.47.2-3+b3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (3297 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpabq5twfc/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (345 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuz2rlc40/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libnettle8t64 riscv64 3.10.2-1 [332 kB] Fetched 332 kB in 0s (4274 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyr281t3p/libnettle8t64_3.10.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 util-linux riscv64 2.41.2-4 [1158 kB] Fetched 1158 kB in 0s (9410 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm7jw_oku/util-linux_2.41.2-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libhogweed6t64 riscv64 3.10.2-1 [336 kB] Fetched 336 kB in 0s (4504 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp07rpjur5/libhogweed6t64_3.10.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libzstd1 riscv64 1.5.7+dfsg-2 [372 kB] Fetched 372 kB in 0s (4813 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeg5lipgi/libzstd1_1.5.7+dfsg-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libperl5.40 riscv64 5.40.1-6 [3945 kB] Fetched 3945 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwvnj5_78/libperl5.40_5.40.1-6_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (462 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7jfiv6n7/sensible-utils_0.0.26_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libuuid1 riscv64 2.41.2-4 [40.0 kB] Fetched 40.0 kB in 0s (694 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfncov15h/libuuid1_2.41.2-4_riscv64.deb' Get:1 http://snapshot.debian.org/archive/debian/20251114T142839Z forky/main riscv64 libkrb5support0 riscv64 1.21.3-5 [34.0 kB] Fetched 34.0 kB in 0s (592 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1yag4kxx/libkrb5support0_1.21.3-5_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 automake all 1:1.18.1-2 [877 kB] Fetched 877 kB in 0s (8388 kB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-2_all.deb' to '/srv/rebuilderd/tmp/tmpzx2175c1/automake_1.18.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp-riscv64-linux-gnu riscv64 4:15.2.0-4 [5284 B] Fetched 5284 B in 0s (88.9 kB/s) dpkg-name: info: moved 'cpp-riscv64-linux-gnu_4%3a15.2.0-4_riscv64.deb' to '/srv/rebuilderd/tmp/tmpf616b2nc/cpp-riscv64-linux-gnu_15.2.0-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (146 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8nk4pj8d/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libidn2-0 riscv64 2.3.8-4 [110 kB] Fetched 110 kB in 0s (1756 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp99dejnxx/libidn2-0_2.3.8-4_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libexpat1-dev riscv64 2.7.3-1 [334 kB] Fetched 334 kB in 0s (4470 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp48hx8oac/libexpat1-dev_2.7.3-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 cpp-15 riscv64 15.2.0-7 [1272 B] Fetched 1272 B in 0s (23.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmg7blve2/cpp-15_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libatomic1 riscv64 15.2.0-7 [8524 B] Fetched 8524 B in 0s (152 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdhyz86p2/libatomic1_15.2.0-7_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 groff-base riscv64 1.23.0-9 [1163 kB] Fetched 1163 kB in 0s (9460 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoxp3ftn4/groff-base_1.23.0-9_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libjansson4 riscv64 2.14-2+b3 [40.7 kB] Fetched 40.7 kB in 0s (692 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa1j6fk9g/libjansson4_2.14-2+b3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 binutils-common riscv64 2.45-8 [2558 kB] Fetched 2558 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpph9_oe11/binutils-common_2.45-8_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (1637 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy3j7ocxx/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gettext-base riscv64 0.23.2-1 [244 kB] Fetched 244 kB in 0s (3376 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_8p3phnq/gettext-base_0.23.2-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libcurl4-gnutls-dev riscv64 8.17.0-2 [1291 kB] Fetched 1291 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt25geo0z/libcurl4-gnutls-dev_8.17.0-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgdbm6t64 riscv64 1.26-1 [79.0 kB] Fetched 79.0 kB in 0s (1289 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg2ewh6n5/libgdbm6t64_1.26-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libgdbm-compat4t64 riscv64 1.26-1 [52.9 kB] Fetched 52.9 kB in 0s (890 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuaj114ot/libgdbm-compat4t64_1.26-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libisl23 riscv64 0.27-1 [664 kB] Fetched 664 kB in 0s (6896 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr245sphw/libisl23_0.27-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Fetched 27.6 kB in 0s (481 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqlxxu39s/libjs-sphinxdoc_8.2.3-8_all.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libncursesw6 riscv64 6.5+20250216-2 [141 kB] Fetched 141 kB in 0s (2194 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu5hxk617/libncursesw6_6.5+20250216-2_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 libnghttp3-9 riscv64 1.12.0-1 [68.4 kB] Fetched 68.4 kB in 0s (1143 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxz68mi1w/libnghttp3-9_1.12.0-1_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-3 [58.7 kB] Fetched 58.7 kB in 0s (993 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdd3xn_sf/librtmp1_2.4+20151223.gitfa8646d.1-3_riscv64.deb' Get:1 http://deb.debian.org/debian unstable/main riscv64 gcc-15 riscv64 15.2.0-7 [514 kB] Fetched 514 kB in 0s (6065 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp48nevbu6/gcc-15_15.2.0-7_riscv64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture riscv64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_riscv64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_riscv64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmp7xnzoj9v/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture riscv64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.NRfJVQhHEu as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.NRfJVQhHEu 127.0.0.1 - - [15/Nov/2025 17:28:19] code 404, message File not found 127.0.0.1 - - [15/Nov/2025 17:28:19] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:43405 ./ InRelease 127.0.0.1 - - [15/Nov/2025 17:28:19] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:43405 ./ Release [462 B] 127.0.0.1 - - [15/Nov/2025 17:28:19] code 404, message File not found 127.0.0.1 - - [15/Nov/2025 17:28:19] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:43405 ./ Release.gpg 127.0.0.1 - - [15/Nov/2025 17:28:19] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:43405 ./ Packages [308 kB] Fetched 309 kB in 0s (2124 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./gcc-15-base_15.2.0-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./libc6_2.41-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./libgcc-s1_15.2.0-7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./mawk_1.3.4.20250131-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./base-files_14_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./libtinfo6_6.5%2b20250216-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./debianutils_5.23.2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./bash_5.3-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./libacl1_2.3.2-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./libattr1_2.5.2-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./libcap2_2.75-10%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:20] "GET /./libgmp10_6.3.0%2bdfsg-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./libpcre2-8-0_10.46-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./libselinux1_3.9-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./libzstd1_1.5.7%2bdfsg-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./zlib1g_1.3.dfsg%2breally1.3.1-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./libssl3t64_3.5.4-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./openssl-provider-legacy_3.5.4-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./libsystemd0_258.1-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./coreutils_9.7-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./dash_0.5.12-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./diffutils_3.12-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./libbz2-1.0_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./liblzma5_5.8.1-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./libmd0_1.1.0-2%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./tar_1.35%2bdfsg-3.1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./dpkg_1.22.21_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:21] "GET /./findutils_4.10.0-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./grep_3.12-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./gzip_1.13-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./hostname_3.25_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./ncurses-bin_6.5%2b20250216-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libcrypt1_4.5.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./perl-base_5.40.1-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./sed_4.9-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libcap-ng0_0.8.5-4%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libaudit1_4.1.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libdb5.3t64_5.3.28%2bdfsg2-10_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./debconf_1.5.91_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libpam0g_1.7.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libpam-modules-bin_1.7.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libpam-modules_1.7.0-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libblkid1_2.41.2-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libmount1_2.41.2-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libsmartcols1_2.41.2-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libudev1_258.1-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libuuid1_2.41.2-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./util-linux_2.41.2-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libdebconfclient0_0.281_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./base-passwd_3.6.8_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./libc-bin_2.41-12_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./ncurses-base_6.5%2b20250216-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:28:22] "GET /./sysvinit-utils_3.15-5_riscv64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.NRfJVQhHEu 127.0.0.1 - - [15/Nov/2025 17:28:31] code 404, message File not found 127.0.0.1 - - [15/Nov/2025 17:28:31] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:43405 ./ InRelease 127.0.0.1 - - [15/Nov/2025 17:28:31] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:43405 ./ Release 127.0.0.1 - - [15/Nov/2025 17:28:31] code 404, message File not found 127.0.0.1 - - [15/Nov/2025 17:28:31] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:43405 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... 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127.0.0.1 - - [15/Nov/2025 17:29:05] "GET /./libexpat1-dev_2.7.3-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:05] "GET /./zlib1g-dev_1.3.dfsg%2breally1.3.1-1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:05] "GET /./libpython3.13-dev_3.13.9-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3.13-dev_3.13.9-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libngtcp2-crypto-gnutls-dev_1.16.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-typing-extensions_4.15.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-typeguard_4.4.4-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libgssrpc4t64_1.21.3-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libgnutls-openssl27t64_3.8.10-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libldap-dev_2.6.10%2bdfsg-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-iniconfig_2.1.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-packaging_25.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-pluggy_1.6.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-pygments_2.18.0%2bdfsg-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-pytest_8.4.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libpython3-dev_3.13.7-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-more-itertools_10.8.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-jaraco.functools_4.1.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-autocommand_2.2.2-3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-inflect_7.5.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-pkg-resources_78.1.1-0.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-zipp_3.23.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-setuptools_78.1.1-0.1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-jaraco.context_6.0.1-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./python3-jaraco.text_4.0.0-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libkdb5-10t64_1.21.3-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libkadm5clnt-mit12_1.21.3-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libkadm5srv-mit12_1.21.3-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./krb5-multidev_1.21.3-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libp11-kit-dev_0.25.9-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libbz2-dev_1.0.8-6_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./tabix_1.22.1%2bds2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libgmpxx4ldbl_6.3.0%2bdfsg-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libgmp-dev_6.3.0%2bdfsg-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libbrotli-dev_1.1.0-2%2bb7_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libevent-2.1-7t64_2.1.12-stable-10%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libunbound8_1.24.1-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libgnutls-dane0t64_3.8.10-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libidn2-dev_2.3.8-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:07] "GET /./libtasn1-6-dev_4.20.0-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./nettle-dev_3.10.2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./libgnutls28-dev_3.8.10-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./libkrb5-dev_1.21.3-5_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./libpkgconf3_1.8.1-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./pkgconf-bin_1.8.1-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./pkgconf_1.8.1-4_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./libnghttp2-dev_1.64.0-1.1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./libnghttp3-dev_1.12.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./libngtcp2-dev_1.16.0-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./libpsl-dev_0.21.2-1.1%2bb1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./librtmp-dev_2.4%2b20151223.gitfa8646d.1-3_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:08] "GET /./libssl-dev_3.5.4-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./libssh2-1-dev_1.11.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./libzstd-dev_1.5.7%2bdfsg-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./libcurl4-gnutls-dev_8.17.0-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./libdeflate-dev_1.23-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./liblzma-dev_5.8.1-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./libhts-dev_1.22.1%2bds2-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./libncurses6_6.5%2b20250216-2_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./libpython3-all-dev_3.13.7-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./libjs-sphinxdoc_8.2.3-8_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./python3-dev_3.13.7-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./python3-all_3.13.7-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./python3-all-dev_3.13.7-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./samtools_1.22.1-1_riscv64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./dh-python_6.20250414_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Nov/2025 17:29:09] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmp7xnzoj9v/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.NRfJVQhHEu Reading package lists... Building dependency tree... Reading state information... libubsan1 is already the newest version (15.2.0-7). libubsan1 set to manually installed. ncurses-base is already the newest version (6.5+20250216-2). python3.13-dev is already the newest version (3.13.9-1). python3.13-dev set to manually installed. libcap2 is already the newest version (1:2.75-10+b1). libaudit1 is already the newest version (1:4.1.2-1). libldap2 is already the newest version (2.6.10+dfsg-1). libldap2 set to manually installed. gcc-riscv64-linux-gnu is already the newest version (4:15.2.0-4). gcc-riscv64-linux-gnu set to manually installed. perl is already the newest version (5.40.1-6). perl set to manually installed. libgnutls30t64 is already the newest version (3.8.10-3). libgnutls30t64 set to manually installed. libngtcp2-crypto-gnutls-dev is already the newest version (1.16.0-1). libngtcp2-crypto-gnutls-dev set to manually installed. python3-typeguard is already the newest version (4.4.4-1). python3-typeguard set to manually installed. dwz is already the newest version (0.16-2). dwz set to manually installed. libbrotli1 is already the newest version (1.1.0-2+b7). libbrotli1 set to manually installed. coreutils is already the newest version (9.7-3). diffutils is already the newest version (1:3.12-1). ncurses-bin is already the newest version (6.5+20250216-2). libtinfo6 is already the newest version (6.5+20250216-2). liblsan0 is already the newest version (15.2.0-7). liblsan0 set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). zlib1g-dev set to manually installed. make is already the newest version (4.4.1-3). make set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.16.0-1). libngtcp2-crypto-gnutls8 set to manually installed. readline-common is already the newest version (8.3-3). readline-common set to manually installed. python3.13 is already the newest version (3.13.9-1). python3.13 set to manually installed. debconf is already the newest version (1.5.91). libgssrpc4t64 is already the newest version (1.21.3-5). libgssrpc4t64 set to manually installed. libgnutls-openssl27t64 is already the newest version (3.8.10-3). libgnutls-openssl27t64 set to manually installed. hostname is already the newest version (3.25). libldap-dev is already the newest version (2.6.10+dfsg-1). libldap-dev set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-6). perl-modules-5.40 set to manually installed. python3-pytest is already the newest version (8.4.2-1). python3-pytest set to manually installed. libreadline8t64 is already the newest version (8.3-3). libreadline8t64 set to manually installed. bsdextrautils is already the newest version (2.41.2-4). bsdextrautils set to manually installed. libctf-nobfd0 is already the newest version (2.45-8). libctf-nobfd0 set to manually installed. libp11-kit0 is already the newest version (0.25.9-2). libp11-kit0 set to manually installed. libpython3-dev is already the newest version (3.13.7-1). libpython3-dev set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-10). libmpc3 is already the newest version (1.3.1-2). libmpc3 set to manually installed. libsqlite3-0 is already the newest version (3.46.1-8). libsqlite3-0 set to manually installed. dpkg-dev is already the newest version (1.22.21). dpkg-dev set to manually installed. openssl-provider-legacy is already the newest version (3.5.4-1). libgcc-s1 is already the newest version (15.2.0-7). libpipeline1 is already the newest version (1.5.8-1). libpipeline1 set to manually installed. libpam-modules is already the newest version (1.7.0-5). python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. gettext is already the newest version (0.23.2-1). gettext set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-10). libsasl2-modules-db set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5). init-system-helpers is already the newest version (1.69). gcc-15-riscv64-linux-gnu is already the newest version (15.2.0-7). gcc-15-riscv64-linux-gnu set to manually installed. libselinux1 is already the newest version (3.9-2). python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libffi8 is already the newest version (3.5.2-2). libffi8 set to manually installed. libkdb5-10t64 is already the newest version (1.21.3-5). libkdb5-10t64 set to manually installed. libblkid1 is already the newest version (2.41.2-4). libpam0g is already the newest version (1.7.0-5). patch is already the newest version (2.8-2). patch set to manually installed. libsystemd0 is already the newest version (258.1-2). cython3 is already the newest version (3.1.6+dfsg-2). cython3 set to manually installed. krb5-multidev is already the newest version (1.21.3-5). krb5-multidev set to manually installed. libssl3t64 is already the newest version (3.5.4-1). libp11-kit-dev is already the newest version (0.25.9-2). libp11-kit-dev set to manually installed. base-passwd is already the newest version (3.6.8). libbz2-dev is already the newest version (1.0.8-6). libbz2-dev set to manually installed. tabix is already the newest version (1.22.1+ds2-1). tabix set to manually installed. perl-base is already the newest version (5.40.1-6). libcom-err2 is already the newest version (1.47.2-3+b3). libcom-err2 set to manually installed. linux-libc-dev is already the newest version (6.17.7-2). linux-libc-dev set to manually installed. gcc-15-base is already the newest version (15.2.0-7). libgssapi-krb5-2 is already the newest version (1.21.3-5). libgssapi-krb5-2 set to manually installed. libtsan2 is already the newest version (15.2.0-7). libtsan2 set to manually installed. libexpat1 is already the newest version (2.7.3-1). libexpat1 set to manually installed. libuchardet0 is already the newest version (0.0.8-2). libuchardet0 set to manually installed. libsmartcols1 is already the newest version (2.41.2-4). findutils is already the newest version (4.10.0-3). m4 is already the newest version (1.4.20-2). m4 set to manually installed. bash is already the newest version (5.3-1). libgmp-dev is already the newest version (2:6.3.0+dfsg-5). libgmp-dev set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. python3-jaraco.context is already the newest version (6.0.1-1). python3-jaraco.context set to manually installed. libelf1t64 is already the newest version (0.194-1). libelf1t64 set to manually installed. libattr1 is already the newest version (1:2.5.2-3). libhts-dev is already the newest version (1.22.1+ds2-1). libhts-dev set to manually installed. libc-bin is already the newest version (2.41-12). python3 is already the newest version (3.13.7-1). python3 set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b1). libevent-2.1-7t64 set to manually installed. libkrb5-3 is already the newest version (1.21.3-5). libkrb5-3 set to manually installed. cpp-15-riscv64-linux-gnu is already the newest version (15.2.0-7). cpp-15-riscv64-linux-gnu set to manually installed. dpkg is already the newest version (1.22.21). libncurses6 is already the newest version (6.5+20250216-2). libncurses6 set to manually installed. tar is already the newest version (1.35+dfsg-3.1). libpython3-all-dev is already the newest version (3.13.7-1). libpython3-all-dev set to manually installed. libpython3.13-stdlib is already the newest version (3.13.9-1). libpython3.13-stdlib set to manually installed. libxml2-16 is already the newest version (2.15.1+dfsg-0.3). libxml2-16 set to manually installed. libasan8 is already the newest version (15.2.0-7). libasan8 set to manually installed. grep is already the newest version (3.12-1). pkgconf-bin is already the newest version (1.8.1-4). pkgconf-bin set to manually installed. libk5crypto3 is already the newest version (1.21.3-5). libk5crypto3 set to manually installed. libtasn1-6 is already the newest version (4.20.0-2). libtasn1-6 set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). libcrypt-dev is already the newest version (1:4.5.1-1). libcrypt-dev set to manually installed. python3-dev is already the newest version (3.13.7-1). python3-dev set to manually installed. libdpkg-perl is already the newest version (1.22.21). libdpkg-perl set to manually installed. libcap-ng0 is already the newest version (0.8.5-4+b1). dash is already the newest version (0.5.12-12). binutils-riscv64-linux-gnu is already the newest version (2.45-8). binutils-riscv64-linux-gnu set to manually installed. libidn2-dev is already the newest version (2.3.8-4). libidn2-dev set to manually installed. tzdata is already the newest version (2025b-5). tzdata set to manually installed. libkadm5srv-mit12 is already the newest version (1.21.3-5). libkadm5srv-mit12 set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. libkrb5-dev is already the newest version (1.21.3-5). libkrb5-dev set to manually installed. debhelper is already the newest version (13.28). debhelper set to manually installed. libpkgconf3 is already the newest version (1.8.1-4). libpkgconf3 set to manually installed. python3-all is already the newest version (3.13.7-1). python3-all set to manually installed. python3-all-dev is already the newest version (3.13.7-1). python3-all-dev set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.10-3). libgnutls-dane0t64 set to manually installed. libpam-runtime is already the newest version (1.7.0-5). samtools is already the newest version (1.22.1-1). samtools set to manually installed. libhts3t64 is already the newest version (1.22.1+ds2-1). libhts3t64 set to manually installed. python3-typing-extensions is already the newest version (4.15.0-1). python3-typing-extensions set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-10). libsasl2-2 set to manually installed. liblzma5 is already the newest version (5.8.1-2). libmagic1t64 is already the newest version (1:5.46-5). libmagic1t64 set to manually installed. libpython3.13-dev is already the newest version (3.13.9-1). libpython3.13-dev set to manually installed. libssh2-1t64 is already the newest version (1.11.1-1). libssh2-1t64 set to manually installed. sed is already the newest version (4.9-2). libssh2-1-dev is already the newest version (1.11.1-1). libssh2-1-dev set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-7). libstdc++-15-dev set to manually installed. autopoint is already the newest version (0.23.2-1). autopoint set to manually installed. libsframe2 is already the newest version (2.45-8). libsframe2 set to manually installed. libnghttp2-14 is already the newest version (1.64.0-1.1+b1). libnghttp2-14 set to manually installed. pkgconf is already the newest version (1.8.1-4). pkgconf set to manually installed. python3-pluggy is already the newest version (1.6.0-1). python3-pluggy set to manually installed. file is already the newest version (1:5.46-5). file set to manually installed. libpython3-stdlib is already the newest version (3.13.7-1). libpython3-stdlib set to manually installed. libpsl5t64 is already the newest version (0.21.2-1.1+b1). libpsl5t64 set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5). libgmpxx4ldbl set to manually installed. libdeflate0 is already the newest version (1.23-2). libdeflate0 set to manually installed. liblzma-dev is already the newest version (5.8.1-2). liblzma-dev set to manually installed. sysvinit-utils is already the newest version (3.15-5). man-db is already the newest version (2.13.1-1). man-db set to manually installed. python3.13-minimal is already the newest version (3.13.9-1). python3.13-minimal set to manually installed. python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. libitm1 is already the newest version (15.2.0-7). libitm1 set to manually installed. g++-15 is already the newest version (15.2.0-7). g++-15 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libnghttp3-dev is already the newest version (1.12.0-1). libnghttp3-dev set to manually installed. libkeyutils1 is already the newest version (1.6.3-6). libkeyutils1 set to manually installed. python3-iniconfig is already the newest version (2.1.0-1). python3-iniconfig set to manually installed. libudev1 is already the newest version (258.1-2). rpcsvc-proto is already the newest version (1.4.3-1+b2). rpcsvc-proto set to manually installed. python3-packaging is already the newest version (25.0-1). python3-packaging set to manually installed. libhtscodecs2 is already the newest version (1.6.1-2). libhtscodecs2 set to manually installed. xz-utils is already the newest version (5.8.1-2). xz-utils set to manually installed. cpp is already the newest version (4:15.2.0-4). cpp set to manually installed. g++-riscv64-linux-gnu is already the newest version (4:15.2.0-4). g++-riscv64-linux-gnu set to manually installed. debianutils is already the newest version (5.23.2). dh-python is already the newest version (6.20250414). dh-python set to manually installed. libmd0 is already the newest version (1.1.0-2+b1). po-debconf is already the newest version (1.0.21+nmu1). po-debconf set to manually installed. autotools-dev is already the newest version (20240727.1). autotools-dev set to manually installed. bzip2 is already the newest version (1.0.8-6). bzip2 set to manually installed. librtmp-dev is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp-dev set to manually installed. libpsl-dev is already the newest version (0.21.2-1.1+b1). libpsl-dev set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6). mawk is already the newest version (1.3.4.20250131-1). libpython3.13-minimal is already the newest version (3.13.9-1). libpython3.13-minimal set to manually installed. libtool is already the newest version (2.5.4-7). libtool set to manually installed. libmagic-mgc is already the newest version (1:5.46-5). libmagic-mgc set to manually installed. gzip is already the newest version (1.13-1). libc-dev-bin is already the newest version (2.41-12). libc-dev-bin set to manually installed. g++ is already the newest version (4:15.2.0-4). g++ set to manually installed. libc6-dev is already the newest version (2.41-12). libc6-dev set to manually installed. autoconf is already the newest version (2.72-3.1). autoconf set to manually installed. libmount1 is already the newest version (2.41.2-4). libngtcp2-dev is already the newest version (1.16.0-1). libngtcp2-dev set to manually installed. libcurl3t64-gnutls is already the newest version (8.17.0-2). libcurl3t64-gnutls set to manually installed. gcc is already the newest version (4:15.2.0-4). gcc set to manually installed. libtasn1-6-dev is already the newest version (4.20.0-2). libtasn1-6-dev set to manually installed. libunistring5 is already the newest version (1.3-2). libunistring5 set to manually installed. nettle-dev is already the newest version (3.10.2-1). nettle-dev set to manually installed. libgcc-15-dev is already the newest version (15.2.0-7). libgcc-15-dev set to manually installed. libkadm5clnt-mit12 is already the newest version (1.21.3-5). libkadm5clnt-mit12 set to manually installed. python3-pygments is already the newest version (2.18.0+dfsg-2). python3-pygments set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.1-1+b1). libgprofng0 is already the newest version (2.45-8). libgprofng0 set to manually installed. libpython3.13 is already the newest version (3.13.9-1). libpython3.13 set to manually installed. python3-autocommand is already the newest version (2.2.2-3). python3-autocommand set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. libdeflate-dev is already the newest version (1.23-2). libdeflate-dev set to manually installed. libstdc++6 is already the newest version (15.2.0-7). libstdc++6 set to manually installed. build-essential is already the newest version (12.12). build-essential set to manually installed. libdebhelper-perl is already the newest version (13.28). libdebhelper-perl set to manually installed. libgomp1 is already the newest version (15.2.0-7). libgomp1 set to manually installed. libbinutils is already the newest version (2.45-8). libbinutils set to manually installed. libpcre2-8-0 is already the newest version (10.46-1). dh-autoreconf is already the newest version (21). dh-autoreconf set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5). libunbound8 is already the newest version (1.24.1-2). libunbound8 set to manually installed. base-files is already the newest version (14). libdebconfclient0 is already the newest version (0.281). python3-minimal is already the newest version (3.13.7-1). python3-minimal set to manually installed. libcrypt1 is already the newest version (1:4.5.1-1). libzstd-dev is already the newest version (1.5.7+dfsg-2). libzstd-dev set to manually installed. python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. libacl1 is already the newest version (2.3.2-2+b1). bcftools is already the newest version (1.22-1). bcftools set to manually installed. binutils is already the newest version (2.45-8). binutils set to manually installed. libmpfr6 is already the newest version (4.2.2-2). libmpfr6 set to manually installed. libc6 is already the newest version (2.41-12). libnghttp2-dev is already the newest version (1.64.0-1.1+b1). libnghttp2-dev set to manually installed. libgnutls28-dev is already the newest version (3.8.10-3). libgnutls28-dev set to manually installed. libssl-dev is already the newest version (3.5.4-1). libssl-dev set to manually installed. g++-15-riscv64-linux-gnu is already the newest version (15.2.0-7). g++-15-riscv64-linux-gnu set to manually installed. libbrotli-dev is already the newest version (1.1.0-2+b7). libbrotli-dev set to manually installed. libcc1-0 is already the newest version (15.2.0-7). libcc1-0 set to manually installed. libctf0 is already the newest version (2.45-8). libctf0 set to manually installed. libngtcp2-16 is already the newest version (1.16.0-1). libngtcp2-16 set to manually installed. comerr-dev is already the newest version (2.1-1.47.2-3+b3). comerr-dev set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. libnettle8t64 is already the newest version (3.10.2-1). libnettle8t64 set to manually installed. util-linux is already the newest version (2.41.2-4). libhogweed6t64 is already the newest version (3.10.2-1). libhogweed6t64 set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-2). libperl5.40 is already the newest version (5.40.1-6). libperl5.40 set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libuuid1 is already the newest version (2.41.2-4). libkrb5support0 is already the newest version (1.21.3-5). libkrb5support0 set to manually installed. automake is already the newest version (1:1.18.1-2). automake set to manually installed. cpp-riscv64-linux-gnu is already the newest version (4:15.2.0-4). cpp-riscv64-linux-gnu set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. libidn2-0 is already the newest version (2.3.8-4). libidn2-0 set to manually installed. libexpat1-dev is already the newest version (2.7.3-1). libexpat1-dev set to manually installed. cpp-15 is already the newest version (15.2.0-7). cpp-15 set to manually installed. libatomic1 is already the newest version (15.2.0-7). libatomic1 set to manually installed. groff-base is already the newest version (1.23.0-9). groff-base set to manually installed. libjansson4 is already the newest version (2.14-2+b3). libjansson4 set to manually installed. binutils-common is already the newest version (2.45-8). binutils-common set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. gettext-base is already the newest version (0.23.2-1). gettext-base set to manually installed. libcurl4-gnutls-dev is already the newest version (8.17.0-2). libcurl4-gnutls-dev set to manually installed. libgdbm6t64 is already the newest version (1.26-1). libgdbm6t64 set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1). libgdbm-compat4t64 set to manually installed. libisl23 is already the newest version (0.27-1). libisl23 set to manually installed. libjs-sphinxdoc is already the newest version (8.2.3-8). libjs-sphinxdoc set to manually installed. libncursesw6 is already the newest version (6.5+20250216-2). libncursesw6 set to manually installed. libnghttp3-9 is already the newest version (1.12.0-1). libnghttp3-9 set to manually installed. librtmp1 is already the newest version (2.4+20151223.gitfa8646d.1-3). librtmp1 set to manually installed. gcc-15 is already the newest version (15.2.0-7). gcc-15 set to manually installed. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.NRfJVQhHEu (Reading database ... 18731 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.NRfJVQhHEu I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.NRfJVQhHEu I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.NRfJVQhHEu... I: success in 263.7606 seconds Downloading dependency 129 of 250: autopoint:riscv64=0.23.2-1 Downloading dependency 130 of 250: libsframe2:riscv64=2.45-8 Downloading dependency 131 of 250: libnghttp2-14:riscv64=1.64.0-1.1+b1 Downloading dependency 132 of 250: pkgconf:riscv64=1.8.1-4 Downloading dependency 133 of 250: python3-pluggy:riscv64=1.6.0-1 Downloading dependency 134 of 250: file:riscv64=1:5.46-5 Downloading dependency 135 of 250: libpython3-stdlib:riscv64=3.13.7-1 Downloading dependency 136 of 250: libpsl5t64:riscv64=0.21.2-1.1+b1 Downloading dependency 137 of 250: libgmpxx4ldbl:riscv64=2:6.3.0+dfsg-5 Downloading dependency 138 of 250: libdeflate0:riscv64=1.23-2 Downloading dependency 139 of 250: liblzma-dev:riscv64=5.8.1-2 Downloading dependency 140 of 250: sysvinit-utils:riscv64=3.15-5 Downloading dependency 141 of 250: man-db:riscv64=2.13.1-1 Downloading dependency 142 of 250: python3.13-minimal:riscv64=3.13.9-1 Downloading dependency 143 of 250: 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libexpat1-dev:riscv64=2.7.3-1 Downloading dependency 235 of 250: cpp-15:riscv64=15.2.0-7 Downloading dependency 236 of 250: libatomic1:riscv64=15.2.0-7 Downloading dependency 237 of 250: groff-base:riscv64=1.23.0-9 Downloading dependency 238 of 250: libjansson4:riscv64=2.14-2+b3 Downloading dependency 239 of 250: binutils-common:riscv64=2.45-8 Downloading dependency 240 of 250: libarchive-zip-perl:riscv64=1.68-1 Downloading dependency 241 of 250: gettext-base:riscv64=0.23.2-1 Downloading dependency 242 of 250: libcurl4-gnutls-dev:riscv64=8.17.0-2 Downloading dependency 243 of 250: libgdbm6t64:riscv64=1.26-1 Downloading dependency 244 of 250: libgdbm-compat4t64:riscv64=1.26-1 Downloading dependency 245 of 250: libisl23:riscv64=0.27-1 Downloading dependency 246 of 250: libjs-sphinxdoc:riscv64=8.2.3-8 Downloading dependency 247 of 250: libncursesw6:riscv64=6.5+20250216-2 Downloading dependency 248 of 250: libnghttp3-9:riscv64=1.12.0-1 Downloading dependency 249 of 250: librtmp1:riscv64=2.4+20151223.gitfa8646d.1-3 Downloading dependency 250 of 250: gcc-15:riscv64=15.2.0-7 env --chdir=/srv/rebuilderd/tmp/rebuilderdC1G8eV/out DEB_BUILD_OPTIONS=parallel=4 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1763125845 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildD22AIX/debrebuild.sbuildrc.jS18iIhpJxEf sbuild --build=riscv64 --host=riscv64 --no-source --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildD22AIX/debrebuild.tar.u1ehiFR8ZzuR --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=python-pysam-0.23.3+ds /srv/rebuilderd/tmp/rebuilderdC1G8eV/inputs/python-pysam_0.23.3+ds-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl The Debian buildds switched to the "unshare" backend and sbuild will default to it in the future. To start using "unshare" add this to your `~/.config/sbuild/config.pl`: $chroot_mode = "unshare"; If you want to keep the old "schroot" mode even in the future, add the following to your `~/.config/sbuild/config.pl`: $chroot_mode = "schroot"; $schroot = "schroot"; sbuild (Debian sbuild) 0.89.3+deb13u1 (16 August 2025) on localhost +==============================================================================+ | python-pysam 0.23.3+ds-2 (riscv64) Sat, 15 Nov 2025 09:32:45 +0000 | +==============================================================================+ Package: python-pysam Version: 0.23.3+ds-2 Source Version: 0.23.3+ds-2 Distribution: unstable Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildD22AIX/debrebuild.tar.u1ehiFR8ZzuR to /srv/rebuilderd/tmp/tmp.sbuild.vNOqaOk00a... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sat, 15 Nov 2025 09:33:33 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdC1G8eV/inputs/python-pysam_0.23.3+ds-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdC1G8eV/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 15 Nov 2025 09:33:43 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix, samtools, bcftools, python3-pytest, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-oB1FjZ/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sat, 15 Nov 2025 09:34:09 +0000 | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment Sat, 15 Nov 2025 09:34:11 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.48+deb13-riscv64 #1 SMP Debian 6.12.48-1 (2025-09-20) riscv64 (riscv64) Toolchain package versions: binutils_2.45-8 dpkg-dev_1.22.21 g++-15_15.2.0-7 gcc-15_15.2.0-7 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-7 libstdc++6_15.2.0-7 linux-libc-dev_6.17.7-2 Package versions: autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 bcftools_1.22-1 binutils_2.45-8 binutils-common_2.45-8 binutils-riscv64-linux-gnu_2.45-8 bsdextrautils_2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 comerr-dev_2.1-1.47.2-3+b3 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-7 cpp-15-riscv64-linux-gnu_15.2.0-7 cpp-riscv64-linux-gnu_4:15.2.0-4 cython3_3.1.6+dfsg-2 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debianutils_5.23.2 dh-autoreconf_21 dh-python_6.20250414 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-15_15.2.0-7 g++-15-riscv64-linux-gnu_15.2.0-7 g++-riscv64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-7 gcc-15-base_15.2.0-7 gcc-15-riscv64-linux-gnu_15.2.0-7 gcc-riscv64-linux-gnu_4:15.2.0-4 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libarchive-zip-perl_1.68-1 libasan8_15.2.0-7 libatomic1_15.2.0-7 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-8 libblkid1_2.41.2-4 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-7 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.45-8 libctf0_2.45-8 libcurl3t64-gnutls_8.17.0-2 libcurl4-gnutls-dev_8.17.0-2 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.281 libdebhelper-perl_13.28 libdeflate-dev_1.23-2 libdeflate0_1.23-2 libdpkg-perl_1.22.21 libelf1t64_0.194-1 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.3-1 libexpat1-dev_2.7.3-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-15-dev_15.2.0-7 libgcc-s1_15.2.0-7 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp-dev_2:6.3.0+dfsg-5 libgmp10_2:6.3.0+dfsg-5 libgmpxx4ldbl_2:6.3.0+dfsg-5 libgnutls-dane0t64_3.8.10-3 libgnutls-openssl27t64_3.8.10-3 libgnutls28-dev_3.8.10-3 libgnutls30t64_3.8.10-3 libgomp1_15.2.0-7 libgprofng0_2.45-8 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhogweed6t64_3.10.2-1 libhts-dev_1.22.1+ds2-1 libhts3t64_1.22.1+ds2-1 libhtscodecs2_1.6.1-2 libidn2-0_2.3.8-4 libidn2-dev_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-7 libjansson4_2.14-2+b3 libjs-sphinxdoc_8.2.3-8 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 libldap-dev_2.6.10+dfsg-1 libldap2_2.6.10+dfsg-1 liblsan0_15.2.0-7 liblzma-dev_5.8.1-2 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncurses6_6.5+20250216-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp2-dev_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libnghttp3-dev_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-gnutls-dev_1.16.0-1 libngtcp2-crypto-gnutls8_1.16.0-1 libngtcp2-dev_1.16.0-1 libp11-kit-dev_0.25.9-2 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpython3-all-dev_3.13.7-1 libpython3-dev_3.13.7-1 libpython3-stdlib_3.13.7-1 libpython3.13_3.13.9-1 libpython3.13-dev_3.13.9-1 libpython3.13-minimal_3.13.9-1 libpython3.13-stdlib_3.13.9-1 libreadline8t64_8.3-3 librtmp-dev_2.4+20151223.gitfa8646d.1-3 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libselinux1_3.9-2 libsframe2_2.45-8 libsmartcols1_2.41.2-4 libsqlite3-0_3.46.1-8 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.5.4-1 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-7 libstdc++6_15.2.0-7 libsystemd0_258.1-2 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-7 libtsan2_15.2.0-7 libubsan1_15.2.0-7 libuchardet0_0.0.8-2 libudev1_258.1-2 libunbound8_1.24.1-2 libunistring5_1.3-2 libuuid1_2.41.2-4 libxml2-16_2.15.1+dfsg-0.3 libzstd-dev_1.5.7+dfsg-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.17.7-2 m4_1.4.20-2 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_14.0.0 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 nettle-dev_3.10.2-1 openssl-provider-legacy_3.5.4-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 python3_3.13.7-1 python3-all_3.13.7-1 python3-all-dev_3.13.7-1 python3-autocommand_2.2.2-3 python3-dev_3.13.7-1 python3-inflect_7.5.0-1 python3-iniconfig_2.1.0-1 python3-jaraco.context_6.0.1-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.13.7-1 python3-more-itertools_10.8.0-1 python3-packaging_25.0-1 python3-pkg-resources_78.1.1-0.1 python3-pluggy_1.6.0-1 python3-pygments_2.18.0+dfsg-2 python3-pytest_8.4.2-1 python3-setuptools_78.1.1-0.1 python3-typeguard_4.4.4-1 python3-typing-extensions_4.15.0-1 python3-zipp_3.23.0-1 python3.13_3.13.9-1 python3.13-dev_3.13.9-1 python3.13-minimal_3.13.9-1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1+b2 samtools_1.22.1-1 sed_4.9-2 sensible-utils_0.0.26 sysvinit-utils_3.15-5 tabix_1.22.1+ds2-1 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Sat, 15 Nov 2025 09:34:11 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pysam Binary: python3-pysam, python-pysam-tests Architecture: any all Version: 0.23.3+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://pysam.readthedocs.org/en/latest Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pysam Vcs-Git: https://salsa.debian.org/med-team/python-pysam.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libhts-dev (>= 1.21~), zlib1g-dev, python3-all-dev, python3-setuptools, cython3, tabix , samtools , bcftools , python3-pytest Package-List: python-pysam-tests deb python optional arch=all python3-pysam deb python optional arch=any Checksums-Sha1: 1b49a3366585afd7a0d97e4a8a76f6c6edbf8d7f 1504032 python-pysam_0.23.3+ds.orig.tar.xz 7bc9556aeedcb1571fd39804eb9968e197416f66 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Checksums-Sha256: 2856d59bae742917c3bd10394cebaecdc962fefd6a2d22f26e5654b9a88c9503 1504032 python-pysam_0.23.3+ds.orig.tar.xz 27c4e16dea126a173ed9376325b9ce5cf15065330cea110ff95ce111a4e237f2 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Files: f901cb0c76035311780a8148d00734cb 1504032 python-pysam_0.23.3+ds.orig.tar.xz d24853188d4c0ff3160b32d4c6619401 10808 python-pysam_0.23.3+ds-2.debian.tar.xz Dgit: 06ed25e577b1b799ea2bb4f676c9da59d516cfd3 debian archive/debian/0.23.3+ds-2 https://git.dgit.debian.org/python-pysam -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmkXLa8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr3xBAAlFUQPSpK492NL+m6/Kxsz8hlkUjE ZQW+4U8gJnyBAREXwTr/3TJJ/0moSCWDnJu2QelRPD7wW6a3ZttA++xhsbuh2+fv 1OyAGQ73stTIuw9fGcqDJFfDBAliEsUnvkUAywuXZvRqNHNVl+4m4hzsMFtjAqzv 5YrlBUqjOEN2BoY/bwZ/CdhIsQDylegmSifGUtZyBhBkjtiqeXOukhlAAXfCx2Km wdk56vI9h2+JBpjYhnHFicJaE5mJ0cjvCK1f3wKLj2sHtAU+8NHiCEOohTouTcwp fhp9JtZH2+wuse9DwGeLXBeoFPOgYtVJvo+x4batasPJi9I4GNmKhB10My/GAiVu bHH++mUj1O3uOzHIniJcX2Abgl5HzbzfkCYXkjPa2JK6EtRvVxGQkG91ii+hvbtL LmC15gqqrjQcVSfWnHDBd2+B5b/vcvmPTuQdFFod1EFklvXgsC/WBIs+GYGM7saq ghrG7CHWYCoJ9s0YWpoU9xP61NtE1KG1Utz48I59iXAjhn7Vv/mcLeaSJFUQvMpc dad8n1PoA1+i8O34PoaHt+1mWBkOalGPukk/GtQOAuNjy57NcolFlkZnVTKDx/mU gphsTKzueICqKkvyzK0cgw10v5id74S5OSfMUAx/X6zXJ3WBGlPKETPhWj1nWiUn z3nSw6divArBM40= =lkGL -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./python-pysam_0.23.3+ds-2.dsc: unsupported subcommand dpkg-source: info: extracting python-pysam in /build/reproducible-path/python-pysam-0.23.3+ds dpkg-source: info: unpacking python-pysam_0.23.3+ds.orig.tar.xz dpkg-source: info: unpacking python-pysam_0.23.3+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_test_remote.patch dpkg-source: info: applying clean_less dpkg-source: info: applying skip-test-on-32-bit.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1763125845 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package python-pysam dpkg-buildpackage: info: source version 0.23.3+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean cd tests/pysam_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running clean removing '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -f \ pysam/config.py \ pysam/config.h \ pysam/lib*.c \ samtools/config.h \ bcftools/config.h rm -rf pysam.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running build running build_py creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include copying pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include running egg_info creating pysam.egg-info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt writing manifest file 'pysam.egg-info/SOURCES.txt' reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4 copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext checking for riscv64-linux-gnu-gcc option to enable C99 features... creating build/temp.linux-riscv64-cpython-313/pysam riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c pysam/conftest_cstd.c -o build/temp.linux-riscv64-cpython-313/pysam/conftest_cstd.o riscv64-linux-gnu-gcc option to enable C99 features: none needed Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/htslib_util.c -o build/temp.linux-riscv64-cpython-313/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libchtslib.c -o build/temp.linux-riscv64-cpython-313/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/htslib_util.o build/temp.linux-riscv64-cpython-313/pysam/libchtslib.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-riscv64-cpython-313/samtools creating build/temp.linux-riscv64-cpython-313/samtools/lz4 riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcsamtools.c -o build/temp.linux-riscv64-cpython-313/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_color.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_import.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_index.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_md.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_split.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bamtk.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bedcov.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/bedidx.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/coverage.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/cram_size.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/cut_target.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/dict.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/faidx.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/lz4/lz4.c -o build/temp.linux-riscv64-cpython-313/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/padding.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/phase.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/reference.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/reset.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sam_view.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/sample.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/samtools.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/stats.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-riscv64-cpython-313/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcsamtools.o build/temp.linux-riscv64-cpython-313/samtools/amplicon_stats.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam2depth.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_addrprg.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_aux.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_cat.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_color.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_consensus.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_fastq.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_flags.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_import.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_index.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_lpileup.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_markdup.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_mate.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_md.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_plbuf.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_plcmd.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_quickcheck.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_reheader.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_rmdup.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_rmdupse.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_samples.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_sort.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_split.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bam_stat.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bamshuf.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bamtk.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bedcov.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/bedidx.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/consensus_pileup.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/coverage.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/cram_size.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/cut_target.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/dict.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/faidx.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/lz4/lz4.o build/temp.linux-riscv64-cpython-313/samtools/padding.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/phase.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/reference.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/reset.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/sam_opts.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/sam_utils.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/sam_view.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/sample.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/samtools.pysam.o build/temp.linux-riscv64-cpython-313/samtools/stats.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/stats_isize.c.pysam.o build/temp.linux-riscv64-cpython-313/samtools/tmp_file.c.pysam.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-riscv64-cpython-313/bcftools riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/HMM.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/abuf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bcftools.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/bin.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/ccall.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/cols.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/convert.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/csq.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/dist.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/edlib.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/em.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/extsort.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/filter.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/gff.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/hclust.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/kmin.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/main.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/mcall.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/prob1.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/regidx.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/reheader.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/tabix.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c bcftools/version.c.pysam.c -o build/temp.linux-riscv64-cpython-313/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcbcftools.c -o build/temp.linux-riscv64-cpython-313/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/bcftools/HMM.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/abuf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bam_sample.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bcftools.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/bin.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/ccall.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/cols.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/consensus.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/convert.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/csq.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/dist.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/edlib.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/em.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/extsort.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/filter.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/gff.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/gvcf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/hclust.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/kmin.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/main.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/mcall.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/mpileup.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/ploidy.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/prob1.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/read_consensus.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/regidx.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/reheader.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/smpl_ilist.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/str_finder.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/tabix.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/tsv2vcf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfannotate.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfbuf.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfcall.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfcnv.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfconcat.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfconvert.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcffilter.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfhead.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfindex.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfisec.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfmerge.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfnorm.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfplugin.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfquery.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfroh.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfsom.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfsort.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfstats.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcfview.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/vcmp.c.pysam.o build/temp.linux-riscv64-cpython-313/bcftools/version.c.pysam.o build/temp.linux-riscv64-cpython-313/pysam/libcbcftools.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcutils.c -o build/temp.linux-riscv64-cpython-313/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/pysam_util.c -o build/temp.linux-riscv64-cpython-313/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcutils.o build/temp.linux-riscv64-cpython-313/pysam/pysam_util.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcsamtools.cpython-313-riscv64-linux-gnu -lcbcftools.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignmentfile.pyx:2564:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2569:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2574:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2613:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2618:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2623:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcalignmentfile.c -o build/temp.linux-riscv64-cpython-313/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcalignmentfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcsamfile.c -o build/temp.linux-riscv64-cpython-313/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcsamfile.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcalignedsegment.c -o build/temp.linux-riscv64-cpython-313/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcalignedsegment.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libctabix.c -o build/temp.linux-riscv64-cpython-313/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libctabix.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcfaidx.c -o build/temp.linux-riscv64-cpython-313/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcfaidx.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcbcf.c -o build/temp.linux-riscv64-cpython-313/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcbcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcbgzf.c -o build/temp.linux-riscv64-cpython-313/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcbgzf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libctabixproxies.c -o build/temp.linux-riscv64-cpython-313/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libctabixproxies.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1083:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/reproducible-path/python-pysam-0.23.3+ds/pysam -I/usr/include -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools -I/build/reproducible-path/python-pysam-0.23.3+ds/samtools/lz4 -I/build/reproducible-path/python-pysam-0.23.3+ds/bcftools -I/build/reproducible-path/python-pysam-0.23.3+ds -I/usr/include/python3.13 -c pysam/libcvcf.c -o build/temp.linux-riscv64-cpython-313/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement riscv64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-riscv64-cpython-313/pysam/libcvcf.o -L/build/reproducible-path/python-pysam-0.23.3+ds/pysam -L/usr/lib/riscv64-linux-gnu -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam -L/usr/lib/riscv64-linux-gnu -lz -lhts -lchtslib.cpython-313-riscv64-linux-gnu -lcutils.cpython-313-riscv64-linux-gnu -o /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' cd tests/pysam_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' samtools faidx ex1.fa samtools view --no-PG -bo ex1.bam -t ex1.fa.fai ex1.sam.gz samtools mpileup -f ex1.fa ex1.bam | gzip > ex1.pileup.gz [mpileup] 1 samples in 1 input files gunzip < ex1.sam.gz > ex1.sam samtools index ex1.bam samtools view --no-PG -h ex1.bam | gzip > ex2.sam.gz gunzip < ex2.sam.gz > ex2.sam samtools view --no-PG -bo ex2.bam ex2.sam samtools index ex2.bam samtools calmd --no-PG --output-fmt BAM ex2.bam ex1.fa > with_md.sam.gz [bam_fillmd1] different NM for read 'EAS139_11:7:46:695:738': 3 -> 8 [bam_fillmd1] different NM for read 'EAS218_4:1:48:9:409': 0 -> 5 [bam_fillmd1] different NM for read 'B7_591:7:200:192:373': 0 -> 5 [bam_fillmd1] different NM for read 'EAS56_65:1:163:846:223': 0 -> 5 [bam_fillmd1] different NM for read 'EAS114_30:7:283:799:560': 0 -> 5 [bam_fillmd1] different NM for read 'B7_595:4:84:802:737': 0 -> 4 [bam_fillmd1] different NM for read 'EAS51_66:5:308:400:602': 0 -> 3 [bam_fillmd1] different NM for read 'EAS54_81:2:285:367:932': 0 -> 3 [bam_fillmd1] different NM for read 'EAS114_39:1:70:147:84': 0 -> 3 [bam_fillmd1] different NM for read 'EAS56_53:1:124:243:35': 2 -> 5 [bam_fillmd1] different NM for read 'EAS1_103:2:226:302:758': 2 -> 3 [bam_fillmd1] different NM for read 'EAS114_28:6:175:705:982': 1 -> 0 [bam_fillmd1] different NM for read 'EAS51_64:4:179:389:585': 7 -> 8 [bam_fillmd1] different NM for read 'B7_589:1:122:337:968': 3 -> 2 [bam_fillmd1] different NM for read 'B7_610:4:15:805:420': 4 -> 5 [bam_fillmd1] different NM for read 'B7_591:2:279:124:41': 2 -> 4 [bam_fillmd1] different NM for read 'EAS112_32:8:89:254:332': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:7:103:731:697': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_11:2:71:83:58': 0 -> 2 [bam_fillmd1] different NM for read 'EAS192_3:4:63:5:870': 0 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:29:1822:1881': 0 -> 2 [bam_fillmd1] different NM for read 'EAS188_7:3:15:568:42': 2 -> 1 [bam_fillmd1] different NM for read 'EAS1_95:4:176:971:874': 0 -> 1 [bam_fillmd1] different NM for read 'EAS1_99:1:34:649:318': 3 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:4:61:346:384': 3 -> 4 [bam_fillmd1] different NM for read 'B7_597:6:20:592:496': 0 -> 1 [bam_fillmd1] different NM for read 'B7_597:4:38:999:463': 2 -> 1 [bam_fillmd1] different NM for read 'EAS114_28:5:23:944:377': 0 -> 3 [bam_fillmd1] different NM for read 'EAS219_1:3:90:219:528': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_108:5:89:942:84': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:6:159:493:275': 0 -> 5 [bam_fillmd1] different NM for read 'EAS139_11:1:81:1019:558': 0 -> 5 [bam_fillmd1] different NM for read 'EAS51_62:7:162:195:761': 0 -> 4 [bam_fillmd1] different NM for read 'B7_597:3:115:646:430': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:243:209:110': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_108:2:266:994:429': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:5:32:461:154': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:6:7:492:1088': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_95:6:174:650:125': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:6:89:457:591': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_39:2:38:670:564': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_7:4:92:693:228': 1 -> 6 [bam_fillmd1] different NM for read 'EAS218_1:4:61:1369:440': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_26:4:123:1001:580': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_39:4:10:1312:1558': 0 -> 4 [bam_fillmd1] different NM for read 'EAS220_1:8:45:178:1321': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_59:5:125:137:58': 0 -> 4 [bam_fillmd1] different NM for read 'EAS192_3:3:285:349:797': 1 -> 5 [bam_fillmd1] different NM for read 'EAS114_45:5:56:1757:1319': 0 -> 4 [bam_fillmd1] different NM for read 'B7_591:3:291:404:199': 0 -> 4 [bam_fillmd1] different NM for read 'EAS54_65:7:159:253:353': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_57:1:122:38:103': 0 -> 4 [bam_fillmd1] different NM for read 'EAS188_4:5:103:870:105': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:8:24:718:322': 3 -> 7 [bam_fillmd1] different NM for read 'EAS51_64:6:118:41:489': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_61:3:165:665:220': 0 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:238:803:383': 0 -> 4 [bam_fillmd1] different NM for read 'EAS1_105:3:232:364:583': 0 -> 3 [bam_fillmd1] different NM for read 'B7_595:2:29:729:70': 3 -> 4 [bam_fillmd1] different NM for read 'EAS114_30:6:220:809:850': 4 -> 6 [bam_fillmd1] different NM for read 'EAS54_65:2:264:157:150': 3 -> 5 [bam_fillmd1] different NM for read 'B7_595:8:26:242:35': 2 -> 1 [bam_fillmd1] different NM for read 'B7_610:7:34:144:868': 4 -> 5 [bam_fillmd1] different NM for read 'B7_597:8:147:360:141': 1 -> 2 [bam_fillmd1] different NM for read 'EAS139_19:2:82:154:1333': 0 -> 4 [bam_fillmd1] different NM for read 'EAS56_63:3:41:468:459': 0 -> 3 [bam_fillmd1] different NM for read 'EAS1_97:4:274:287:423': 0 -> 1 [bam_fillmd1] different NM for read 'EAS114_30:2:303:428:326': 0 -> 1 [bam_fillmd1] different NM for read 'EAS54_71:8:105:854:975': 0 -> 3 gunzip < with_md.sam.gz > with_md.sam samtools view --no-PG -bo with_md.bam with_md.sam [W::bam_hdr_read] EOF marker is absent. The input is probably truncated samtools index with_md.bam samtools view --no-PG -bu -o uncompressed.bam ex2.sam samtools view --no-PG -bo MM-chebi.bam MM-chebi.sam samtools view --no-PG -bo MM-double.bam MM-double.sam samtools view --no-PG -bo MM-explicit.bam MM-explicit.sam samtools view --no-PG -bo MM-multi.bam MM-multi.sam samtools view --no-PG -bo MM-orient.bam MM-orient.sam samtools view --no-PG -bo ex10.bam ex10.sam samtools view --no-PG -bo ex3.bam ex3.sam samtools view --no-PG -bo ex4.bam ex4.sam samtools view --no-PG -bo ex5.bam ex5.sam samtools view --no-PG -bo ex6.bam ex6.sam samtools view --no-PG -bo ex8.bam ex8.sam samtools view --no-PG -bo ex9_fail.bam ex9_fail.sam samtools view --no-PG -bo ex9_nofail.bam ex9_nofail.sam samtools view --no-PG -bo ex_spliced.bam ex_spliced.sam samtools view --no-PG -bo example_aligned_pairs.bam example_aligned_pairs.sam samtools view --no-PG -bo example_btag.bam example_btag.sam samtools view --no-PG -bo example_dash_in_chr.bam example_dash_in_chr.sam samtools view --no-PG -bo example_empty_header.bam example_empty_header.sam samtools view --no-PG -bo example_empty_with_header.bam example_empty_with_header.sam samtools view --no-PG -bo example_reverse_complement.bam example_reverse_complement.sam touch tmp.list samtools view --no-PG -bo example_unmapped_reads_no_sq.bam -t tmp.list example_unmapped_reads_no_sq.sam rm -f tmp.list samtools view --no-PG -bo issue100.bam issue100.sam samtools view --no-PG -bo rg_with_tab.bam rg_with_tab.sam samtools view --no-PG -bo softclip.bam softclip.sam samtools view --no-PG -bo tag_bug.bam tag_bug.sam samtools view --no-PG -bo test_mapped_unmapped.bam test_mapped_unmapped.sam samtools view --no-PG -bo test_query_position.bam test_query_position.sam samtools view --no-PG -bo test_unaligned.bam test_unaligned.sam samtools index MM-chebi.bam samtools index MM-double.bam samtools index MM-explicit.bam samtools index MM-multi.bam samtools index MM-orient.bam samtools index ex10.bam samtools index ex3.bam samtools index ex4.bam samtools index ex5.bam samtools index ex6.bam samtools index ex8.bam samtools index ex9_fail.bam samtools index ex9_nofail.bam samtools index ex_spliced.bam samtools index example_aligned_pairs.bam samtools index example_btag.bam samtools index example_dash_in_chr.bam samtools index example_empty_header.bam samtools index example_empty_with_header.bam samtools index example_reverse_complement.bam samtools index example_unmapped_reads_no_sq.bam samtools index issue100.bam samtools index rg_with_tab.bam samtools index softclip.bam samtools index tag_bug.bam samtools index test_mapped_unmapped.bam samtools index test_query_position.bam samtools index test_unaligned.bam samtools view --no-PG -Co ex1.cram -T ex1.fa ex1.sam samtools view --no-PG -Co ex2.cram -T ex1.fa ex2.sam samtools view --no-PG -Co ex3.cram -T ex1.fa ex3.sam samtools index ex1.cram samtools index ex2.cram samtools index ex3.cram cp ex1.bam example_bai.bam samtools index example_bai.bam mv example_bai.bam.bai example_bai.bai dd if=ex2.bam of=ex2_truncated.bam bs=$((`wc -c < ex2.bam`-512)) count=1 1+0 records in 1+0 records out 122288 bytes (122 kB, 119 KiB) copied, 0.002061 s, 59.3 MB/s (bgzip -d < ex2.bam; printf '\37\0\0\0\1\0\0\0') | bgzip > ex2_corrupt.bam grep "^@" ex2.sam | samtools view --no-PG -bo empty.bam - samtools index empty.bam cp ex1.bam explicit_index.bam cp ex1.cram explicit_index.cram gzip < faidx_empty_seq.fq > faidx_empty_seq.fq.gz bgzip < ex1.fa > ex1.fa.gz samtools faidx ex1.fa.gz cp ex1.bam ex1_csi.bam samtools index -c ex1_csi.bam touch all.stamp rm with_md.sam make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make all make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' bgzip < example_vcf40.vcf > example_vcf40.vcf.gz tabix -f -p vcf example_vcf40.vcf.gz # create tbi index bcftools index -f example_vcf40.vcf.gz # create csi index bgzip < example_vcf42.vcf > example_vcf42.vcf.gz tabix -f -p vcf example_vcf42.vcf.gz # create tbi index bcftools index -f example_vcf42.vcf.gz # create csi index bgzip < example_vcf42_only_header.vcf > example_vcf42_only_header.vcf.gz tabix -f -p vcf example_vcf42_only_header.vcf.gz # create tbi index bcftools index -f example_vcf42_only_header.vcf.gz # create csi index bgzip < example_vcf42_withcontigs.vcf > example_vcf42_withcontigs.vcf.gz tabix -f -p vcf example_vcf42_withcontigs.vcf.gz # create tbi index bcftools index -f example_vcf42_withcontigs.vcf.gz # create csi index bgzip < example_vcf43.vcf > example_vcf43.vcf.gz tabix -f -p vcf example_vcf43.vcf.gz # create tbi index bcftools index -f example_vcf43.vcf.gz # create csi index bgzip < example_vcf43_with_utf8.vcf > example_vcf43_with_utf8.vcf.gz tabix -f -p vcf example_vcf43_with_utf8.vcf.gz # create tbi index bcftools index -f example_vcf43_with_utf8.vcf.gz # create csi index bgzip < gnomad.vcf > gnomad.vcf.gz tabix -f -p vcf gnomad.vcf.gz # create tbi index bcftools index -f gnomad.vcf.gz # create csi index bgzip < gnomad_fixed.vcf > gnomad_fixed.vcf.gz tabix -f -p vcf gnomad_fixed.vcf.gz # create tbi index bcftools index -f gnomad_fixed.vcf.gz # create csi index bgzip < missing_genotypes.vcf > missing_genotypes.vcf.gz tabix -f -p vcf missing_genotypes.vcf.gz # create tbi index bcftools index -f missing_genotypes.vcf.gz # create csi index bcftools view -O b example_vcf40.vcf.gz -o example_vcf40.bcf bcftools index -f example_vcf40.bcf bcftools view -O b example_vcf42.vcf.gz -o example_vcf42.bcf bcftools index -f example_vcf42.bcf bcftools view -O b example_vcf42_only_header.vcf.gz -o example_vcf42_only_header.bcf bcftools index -f example_vcf42_only_header.bcf bcftools view -O b example_vcf42_withcontigs.vcf.gz -o example_vcf42_withcontigs.bcf bcftools index -f example_vcf42_withcontigs.bcf bcftools view -O b example_vcf43.vcf.gz -o example_vcf43.bcf bcftools index -f example_vcf43.bcf bcftools view -O b example_vcf43_with_utf8.vcf.gz -o example_vcf43_with_utf8.bcf bcftools index -f example_vcf43_with_utf8.bcf bcftools view -O b gnomad.vcf.gz -o gnomad.bcf bcftools index -f gnomad.bcf bcftools view -O b gnomad_fixed.vcf.gz -o gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools index -f gnomad_fixed.bcf [W::bcf_hdr_check_sanity] PL should be declared as Number=G bcftools view -O b missing_genotypes.vcf.gz -o missing_genotypes.bcf bcftools index -f missing_genotypes.bcf touch all.stamp make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' dh_auto_test I: pybuild base:311: cd /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pysam-0.23.3+ds configfile: setup.cfg plugins: typeguard-4.4.4 collecting ... collected 975 items / 1 skipped tests/AlignedSegment_test.py::TestAlignedSegment::testBlocks PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearQualStr PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testClearSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testCompare PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testEmpty PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testFullReferencePositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testHashing PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testLargeRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testNoSequence PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testPositions PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testSettingTagInEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testStrOfEmptyRead PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdate2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQual PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayB PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualArrayI PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualList PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualString2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateQualTuple PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects1 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateSequenceEffects2 PASSED tests/AlignedSegment_test.py::TestAlignedSegment::testUpdateTlen PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_mapped_reads_are_updated PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_bin_values_for_unmapped_reads_ignore_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_equivalence_matches_only_and_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_1character_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_bad_type_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_hard_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_lowercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_match_mismatch PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_via_cigarstring PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_padding_with_seq PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_skip_reference PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_soft_clipping PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_uppercase_md PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_get_aligned_pairs_with_malformed_MD_tag PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_header_accessible PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_query_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_infer_read_length PASSED tests/AlignedSegment_test.py::TestAlignedSegment::test_query_length_is_limited PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestTidMapping::test_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestTidMapping::test_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestTidMapping::test_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_asterisk PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_be_set_to_none PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_reference_name_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_equal PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_to_missing_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_be_set_without_header PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_tid_can_not_be_set_to_unknown_chromosome PASSED tests/AlignedSegment_test.py::TestNextTidMapping::test_next_unmapped_tid_is_asterisk_in_output PASSED tests/AlignedSegment_test.py::TestCigar::testCigar PASSED tests/AlignedSegment_test.py::TestCigar::testCigarString PASSED tests/AlignedSegment_test.py::TestCigarStats::testStats PASSED tests/AlignedSegment_test.py::TestAlignedPairs::testReferenceBases PASSED tests/AlignedSegment_test.py::TestBaseModifications::testChebi PASSED tests/AlignedSegment_test.py::TestBaseModifications::testDouble PASSED tests/AlignedSegment_test.py::TestBaseModifications::testExplicit PASSED tests/AlignedSegment_test.py::TestBaseModifications::testMulti PASSED tests/AlignedSegment_test.py::TestBaseModifications::testOrient PASSED tests/AlignedSegment_test.py::TestTags::testAddTags PASSED tests/AlignedSegment_test.py::TestTags::testAddTagsType PASSED tests/AlignedSegment_test.py::TestTags::testArrayTags PASSED tests/AlignedSegment_test.py::TestTags::testEmptyTag PASSED tests/AlignedSegment_test.py::TestTags::testLongTags PASSED tests/AlignedSegment_test.py::TestTags::testMDTagComplex PASSED tests/AlignedSegment_test.py::TestTags::testMDTagDeletions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagInsertions PASSED tests/AlignedSegment_test.py::TestTags::testMDTagMatchOnly PASSED tests/AlignedSegment_test.py::TestTags::testMDTagRefSkipping PASSED tests/AlignedSegment_test.py::TestTags::testMDTagSoftClipping PASSED tests/AlignedSegment_test.py::TestTags::testMissingTag PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegers PASSED tests/AlignedSegment_test.py::TestTags::testNegativeIntegersWrittenToFile PASSED tests/AlignedSegment_test.py::TestTags::testSetTag PASSED tests/AlignedSegment_test.py::TestTags::testTagParsing PASSED tests/AlignedSegment_test.py::TestTags::testTagsUpdatingFloat PASSED tests/AlignedSegment_test.py::TestCopy::testCopy PASSED tests/AlignedSegment_test.py::TestCopy::testDeepCopy PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_typecode PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_array_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_invalid_value_type PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_A PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_C PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_H PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_I PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_S PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_a PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_automated_type_detection PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_c PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_d PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_f PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_i PASSED tests/AlignedSegment_test.py::TestSetTagsGetTag::test_set_tag_with_s PASSED tests/AlignedSegment_test.py::TestEnums::test_cigar_enums_are_defined PASSED tests/AlignedSegment_test.py::TestEnums::test_sam_flags_are_defined PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_constructed_without_header PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_read_can_be_written_to_file PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_id_can_be_set PASSED tests/AlignedSegment_test.py::TestBuildingReadsWithoutHeader::test_reference_name_is_not_available PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_qualities_are_complemented PASSED tests/AlignedSegment_test.py::TestForwardStrandValues::test_sequence_is_complemented PASSED tests/AlignedSegment_test.py::TestExportImport::test_dict_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_with_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_string_export_import_without_tags PASSED tests/AlignedSegment_test.py::TestExportImport::test_to_string_without_alignment_file PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_dict PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_header PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_references_without_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderConstruction::test_header_constructed_from_text PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderSAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_contains_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_get_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_keys_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_len_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_setting_raises_error PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_values_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_name_mapping PASSED tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_text_access_works PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_CRAM [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_eurxe6zz' PASSED tests/AlignmentFileHeader_test.py::TestHeaderWriteRead::test_SAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_BAM PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_CRAM [W::sanitise_SQ_lines] Header @SQ length mismatch for ref chr1, 2147483647 vs 1575 [E::cram_index_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_check_read_write_yyjnn7yn' PASSED tests/AlignmentFileHeader_test.py::TestHeaderLargeContigs::test_SAM PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelection::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_all_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_ignore_overlaps PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_base_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_ignore_orphans PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_mapping_quality_threshold PASSED tests/AlignmentFilePileup_test.py::TestPileupReadSelectionFastafile::test_samtools_stepper_redo_baq PASSED tests/AlignmentFilePileup_test.py::TestPileupQueryPosition::testPileup PASSED tests/AlignmentFilePileup_test.py::TestPileupObjects::testIteratorOutOfScope SKIPPED tests/AlignmentFilePileup_test.py::TestPileupObjects::testPileupColumn PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testInverse PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateAll PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIteratePerContig PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateRanges PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumnBAM::testIterateTruncate PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testAccessOnClosedIterator PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStart PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testStr PASSED tests/AlignmentFilePileup_test.py::TestIteratorColumn2::testTruncate PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_depths_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_mapping_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_with_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_bases_without_reference_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_are_equal PASSED tests/AlignmentFilePileup_test.py::PileUpColumnTests::test_pileup_query_qualities_from_pileups_are_equal PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFetch::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFilename::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestBAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFile::testTags PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARflag PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARpos PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARqual PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARquery PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARrname PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testARseq PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testOpt PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestCRAMFromFileNo::testTags PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARQueryLength PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigar PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARcigarstring PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARflag PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmapq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARmrnm PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARpos PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARqual PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARquery PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARrname PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testARseq PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testOpt PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPairedBools PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testPresentOptionalFields PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testRaises PASSED tests/AlignmentFile_test.py::BasicTestSAMFromStringIO::testTags PASSED tests/AlignmentFile_test.py::TestIO::testBAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testBAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithCSIIndex PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithShortBAI PASSED tests/AlignmentFile_test.py::TestIO::testBAMWithoutAlignedSegments PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testCRAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyBAM PASSED tests/AlignmentFile_test.py::TestIO::testEmptyWithHeaderBAM PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFile PASSED tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject PASSED tests/AlignmentFile_test.py::TestIO::testHead PASSED tests/AlignmentFile_test.py::TestIO::testOpenFromFilename PASSED tests/AlignmentFile_test.py::TestIO::testReadBamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadSamWithoutTargetNames PASSED tests/AlignmentFile_test.py::TestIO::testReadingFromFileWithoutIndex PASSED tests/AlignmentFile_test.py::TestIO::testSAM2BAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2CRAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAM PASSED tests/AlignmentFile_test.py::TestIO::testSAM2SAMWithoutHeader PASSED tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile PASSED tests/AlignmentFile_test.py::TestIO::test_accessing_attributes_in_closed_file_raises_errors PASSED tests/AlignmentFile_test.py::TestIO::test_fail_read_sam_without_header PASSED tests/AlignmentFile_test.py::TestIO::test_fail_when_reading_unformatted_files PASSED tests/AlignmentFile_test.py::TestIO::test_fetch_by_tid PASSED tests/AlignmentFile_test.py::TestIO::test_header_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_with_header_without_header_check PASSED tests/AlignmentFile_test.py::TestIO::test_pass_read_sam_without_header_with_refs PASSED tests/AlignmentFile_test.py::TestIO::test_reference_name_available_after_closing_file PASSED tests/AlignmentFile_test.py::TestIO::test_write_bam_to_unknown_path_fails [E::hts_open_format] Failed to open file "missing_directory/new_file.bam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAutoDetect::testBAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testCRAM PASSED tests/AlignmentFile_test.py::TestAutoDetect::testSAM PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowBAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAM::testIterateRanges PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIteratePerContig PASSED tests/AlignmentFile_test.py::TestIteratorRowCRAMWithReferenceFilename::testIterateRanges PASSED tests/AlignmentFile_test.py::TestFloatTagBug::testFloatTagBug PASSED tests/AlignmentFile_test.py::TestLargeFieldBug::testLargeFileBug PASSED tests/AlignmentFile_test.py::TestClipping::testClipping PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_bam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_from_sam_with_until_eof_reads_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads PASSED tests/AlignmentFile_test.py::TestUnmappedReadsRetrieval::test_fetch_with_asterisk_only_returns_unmapped_reads_by_contig PASSED tests/AlignmentFile_test.py::TestContextManager::testManager PASSED tests/AlignmentFile_test.py::TestMultiThread::testSingleThreadEqualsMultithread PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBackwardsOrderOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testBadContig PASSED tests/AlignmentFile_test.py::TestExceptions::testMeaninglessCrap PASSED tests/AlignmentFile_test.py::TestExceptions::testMissingFile [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.bam" : No such file or directory [E::hts_open_format] Failed to open file "exdoesntexist.sam" : No such file or directory PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeLargeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeNewFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testOutOfRangeNegativeOldFormat PASSED tests/AlignmentFile_test.py::TestExceptions::testZeroToZero PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenBamAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsBam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenFastaAsSam PASSED tests/AlignmentFile_test.py::TestWrongFormat::testOpenSamAsBam PASSED tests/AlignmentFile_test.py::TestRegionParsing::test_dash_in_chr PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile PASSED tests/AlignmentFile_test.py::TestDeNovoConstruction::test_pass_if_reads_binary_equal PASSED tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_in_header PASSED tests/AlignmentFile_test.py::TestEmptyHeader::test_bam_without_seq_with_null_bytes_in_header PASSED tests/AlignmentFile_test.py::TestMismatchingHeader::testMismatchingHeader PASSED tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBam2 PASSED tests/AlignmentFile_test.py::TestTruncatedBAM::testTruncatedBamIterator [W::bam_hdr_read] EOF marker is absent. The input is probably truncated [E::bgzf_read_block] Failed to read BGZF block data at offset 105176 expected 17578 bytes; hread returned 17094 [E::bgzf_read] Read block operation failed with error 4 after 0 of 4 bytes PASSED tests/AlignmentFile_test.py::TestCorruptBAM::testCorruptBamIterator PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagSam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadTags PASSED tests/AlignmentFile_test.py::TestBTagBam::testReadWriteTags PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchBAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAM::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetch PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchUntilEOF PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionFalseTrue PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueFalse PASSED tests/AlignmentFile_test.py::TestDoubleFetchCRAMWithReference::testDoubleFetchWithRegionTrueTrue PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetch PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testFetchAll PASSED tests/AlignmentFile_test.py::TestRemoteFileHTTP::testView PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testBAM PASSED tests/AlignmentFile_test.py::TestLargeOptValues::testSAM PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_counts_as_expected PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_nofilter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_quality_filter PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_all PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_read_callback PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_with_coordinates_works PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_without_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_count_coverage_wrong_coordinates_fails PASSED tests/AlignmentFile_test.py::TestCountCoverage::test_counting_the_same_region_works PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_all PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_first PASSED tests/AlignmentFile_test.py::TestFindIntrons::test_total PASSED tests/AlignmentFile_test.py::TestLogging::testFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail1 PASSED tests/AlignmentFile_test.py::TestLogging::testNoFail2 PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testCount PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testIndexStats PASSED tests/AlignmentFile_test.py::TestAlignmentFileUtilityFunctions::testMate PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct PASSED tests/AlignmentFile_test.py::TestMappedUnmapped::test_counts_of_mapped_and_unmapped_are_correct_per_chromosome PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testIndex PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testSort [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestSamtoolsProxy::testView [E::hts_open_format] Failed to open file "missing_file" : No such file or directory PASSED tests/AlignmentFile_test.py::TestAlignmentFileIndex::testIndex PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexBAM [W::hts_idx_load3] The index file is older than the data file: /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/pysam_data/ex1.bam.bai PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testExplicitIndexCRAM PASSED tests/AlignmentFile_test.py::TestExplicitIndex::testRemoteExplicitIndexBAM PASSED tests/AlignmentFile_test.py::TestVerbosity::testVerbosity PASSED tests/AlignmentFile_test.py::TestSanityCheckingBAM::test_empty_read_gives_value_error PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_bam PASSED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_cram SKIPPED tests/AlignmentFile_test.py::TestLargeCigar::test_reading_writing_sam PASSED tests/StreamFiledescriptors_test.py::StreamTest::test_samtools_processing SKIPPED tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCF PASSED tests/VariantFile_test.py::TestMissingGenotypes::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamples::testVCF PASSED tests/VariantFile_test.py::TestMissingSamples::testVCFGZ PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCF [W::bcf_hdr_check_sanity] PL should be declared as Number=G PASSED tests/VariantFile_test.py::TestMissingSamplesFixed::testVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testDetectBCF PASSED tests/VariantFile_test.py::TestOpening::testDetectVCF [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestOpening::testDetectVCFGZ PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCF PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFFromPath PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFGZWithoutIndex PASSED tests/VariantFile_test.py::TestOpening::testEmptyFileVCFOnlyHeader PASSED tests/VariantFile_test.py::TestOpening::testMissingFile [E::hts_open_format] Failed to open file "missing_file.vcf" : No such file or directory PASSED tests/VariantFile_test.py::TestOpening::testMissingFileVCFGZ [E::hts_open_format] Failed to open file "missing_file.vcf.gz" : No such file or directory PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_prebuilt_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_bcf_with_tbi_index_will_produce_csi PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_csi_index PASSED tests/VariantFile_test.py::TestIndexFormatsVCF::test_vcf_with_tbi_index PASSED tests/VariantFile_test.py::TestHeader::testIterator PASSED tests/VariantFile_test.py::TestHeader::testStr PASSED tests/VariantFile_test.py::TestParsing::testAlleles PASSED tests/VariantFile_test.py::TestParsing::testAllelesVariantTypes PASSED tests/VariantFile_test.py::TestParsing::testAlt PASSED tests/VariantFile_test.py::TestParsing::testChrom PASSED tests/VariantFile_test.py::TestParsing::testChromFromPath PASSED tests/VariantFile_test.py::TestParsing::testFilter PASSED tests/VariantFile_test.py::TestParsing::testFormat PASSED tests/VariantFile_test.py::TestParsing::testId PASSED tests/VariantFile_test.py::TestParsing::testInfo PASSED tests/VariantFile_test.py::TestParsing::testPos PASSED tests/VariantFile_test.py::TestParsing::testQual PASSED tests/VariantFile_test.py::TestParsing::testRef PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleleIndices PASSED tests/VariantFile_test.py::TestParsing::testSampleAlleles PASSED tests/VariantFile_test.py::TestParsing::testSampleFormats PASSED tests/VariantFile_test.py::TestParsing::testStart PASSED tests/VariantFile_test.py::TestParsing::testStop PASSED tests/VariantFile_test.py::TestIndexFilename::testOpen PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testBase PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionFromCopy PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithLines PASSED tests/VariantFile_test.py::TestConstructionVCFGZWithoutContigs::testConstructionWithRecords PASSED tests/VariantFile_test.py::TestSettingRecordValues::testBase PASSED tests/VariantFile_test.py::TestSettingRecordValues::testGenotype [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) (0, 0) PASSED tests/VariantFile_test.py::TestSettingRecordValues::testSetQual [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestMultiThreading::testNoMultiThreadingWithIgnoreTruncation PASSED tests/VariantFile_test.py::TestMultiThreading::testSingleThreadEqualsMultithreadResult [E::idx_find_and_load] Could not retrieve index file for '/build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/tmp/pysamtests_tmp_testSingleThreadEqualsMultithreadResult_2_jxsc5z.bcf' PASSED tests/VariantFile_test.py::TestSubsetting::testSubsetting PASSED tests/VariantFile_test.py::TestVCFVersions::test_all_records_can_be_fetched [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/VariantFile_test.py::TestUnicode::test_record_with_unicode PASSED tests/VariantRecord_test.py::test_ascii_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_ascii_annotation_with_variable_length_can_be_added PASSED tests/VariantRecord_test.py::test_unicode_annotation_can_be_added PASSED tests/VariantRecord_test.py::test_set_sample_alleles PASSED tests/VariantRecord_test.py::test_repeated_new_record PASSED tests/compile_test.py::test_bam PASSED tests/compile_test.py::test_gtf PASSED tests/compile_test.py::TestBinaryCompatibility::test_alignments PASSED tests/compile_test.py::TestBinaryCompatibility::test_variants PASSED tests/faidx_test.py::TestFastaFile::testFetch PASSED tests/faidx_test.py::TestFastaFile::testFetchErrors PASSED tests/faidx_test.py::TestFastaFile::testLength PASSED tests/faidx_test.py::TestFastaFile::testOutOfRangeAccess PASSED tests/faidx_test.py::TestFastaFile::testSequenceLengths PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_and_contig_raises_exception PASSED tests/faidx_test.py::TestFastaFile::test_fetch_with_region_is_equivalent PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndex::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_abritrarily_named_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_with_explicit_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_open_file_without_index_succeeds PASSED tests/faidx_test.py::TestFastaFilePathIndexCompressed::test_raise_exception_if_index_is_missing PASSED tests/faidx_test.py::TestFastxFileFastq::testCounts PASSED tests/faidx_test.py::TestFastxFileFastq::testManager PASSED tests/faidx_test.py::TestFastxFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastq::testSequence PASSED tests/faidx_test.py::TestFastqFileFastq::testCounts PASSED tests/faidx_test.py::TestFastqFileFastq::testManager PASSED tests/faidx_test.py::TestFastqFileFastq::testMissingFile PASSED tests/faidx_test.py::TestFastqFileFastq::testSequence PASSED tests/faidx_test.py::TestFastxFileFasta::testCounts PASSED tests/faidx_test.py::TestFastxFileFasta::testManager PASSED tests/faidx_test.py::TestFastxFileFasta::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFasta::testSequence PASSED tests/faidx_test.py::TestFastxFileFastqStream::testCounts PASSED tests/faidx_test.py::TestFastxFileFastqStream::testManager PASSED tests/faidx_test.py::TestFastxFileFastqStream::testMissingFile PASSED tests/faidx_test.py::TestFastxFileFastqStream::testSequence PASSED tests/faidx_test.py::TestFastxFileWithEmptySequence::testIteration PASSED tests/faidx_test.py::TestRemoteFileFTP::testFTPView PASSED tests/faidx_test.py::TestRemoteFileFTP::test_sequence_lengths_are_available PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_can_be_created_from_scratch PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_comment_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_name_is_None PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_fail_if_quality_is_wrong_length PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_name_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_quality_can_be_modified PASSED tests/faidx_test.py::TestFastqRecord::test_fastx_record_sequence_can_be_modified PASSED tests/faidx_test.py::TestFastqProxy::test_fastq_proxy_instantiation_raises_error PASSED tests/linking_test.py::TestLinking::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithRpath::test_package_tests_pass SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_can_be_installed SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_fail_on_import SKIPPED tests/linking_test.py::TestLinkWithoutRpath::test_package_tests_pass_if_ld_library_path_set SKIPPED tests/samtools_test.py::SamtoolsTest::testStatements PASSED tests/samtools_test.py::SamtoolsTest::testUsage SKIPPED (skipping us...) tests/samtools_test.py::EmptyIndexTest::testEmptyIndex PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraArg PASSED tests/samtools_test.py::EmptyIndexTest::testEmptyIndexWithExtraFlag PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingBCFtools [E::hts_open_format] Failed to open file "nonexistent.vcf" : No such file or directory PASSED tests/samtools_test.py::ExerciseSubcommands::testFailingSamtools [E::hts_open_format] Failed to open file "nonexistent.bam" : No such file or directory PASSED tests/samtools_test.py::TestReturnType::testReturnValueData PASSED tests/samtools_test.py::TestReturnType::testReturnValueString PASSED tests/samtools_test.py::StdoutTest::testDoubleCalling PASSED tests/samtools_test.py::StdoutTest::testSaveStdout PASSED tests/samtools_test.py::StdoutTest::testWithRedirectedStdout PASSED tests/samtools_test.py::StdoutTest::testWithoutRedirectedStdout PASSED tests/samtools_test.py::PysamTest::testStatements PASSED tests/samtools_test.py::PysamTest::testUsage SKIPPED (skipping usage...) tests/tabix_test.py::TestIndexing::test_indexing_to_custom_location_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_explict_columns_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_lineskipping_works PASSED tests/tabix_test.py::TestIndexing::test_indexing_with_preset_works PASSED tests/tabix_test.py::TestCompression::testCompression PASSED tests/tabix_test.py::TestCompression::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompression::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionSam::testCompression PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionSam::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionBed::testCompression PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionBed::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestCompressionVCF::testCompression PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetCompressed PASSED tests/tabix_test.py::TestCompressionVCF::testIndexPresetUncompressed PASSED tests/tabix_test.py::TestGZFile::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testAll PASSED tests/tabix_test.py::TestIterationWithoutComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithoutComments::testHeader PASSED tests/tabix_test.py::TestIterationWithoutComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithoutComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithoutComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithoutComments::testReopening PASSED tests/tabix_test.py::TestIterationWithComments::testAll PASSED tests/tabix_test.py::TestIterationWithComments::testGetContigs PASSED tests/tabix_test.py::TestIterationWithComments::testHeader PASSED tests/tabix_test.py::TestIterationWithComments::testInvalidIntervals PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig PASSED tests/tabix_test.py::TestIterationWithComments::testPerContig2 PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigFromStart PASSED tests/tabix_test.py::TestIterationWithComments::testPerContigToEnd PASSED tests/tabix_test.py::TestIterationWithComments::testPerInterval PASSED tests/tabix_test.py::TestIterationWithComments::testRegionStrings PASSED tests/tabix_test.py::TestIterationWithComments::testReopening PASSED tests/tabix_test.py::TestIterators::testClosedFile PASSED tests/tabix_test.py::TestIterators::testClosedFileIteration PASSED tests/tabix_test.py::TestIterators::testIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsGenericCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileCompressed::testIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFile PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testClosedFileIteration PASSED tests/tabix_test.py::TestIteratorsFileUncompressed::testIteration PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooFewFields PASSED tests/tabix_test.py::TestIterationMalformattedGTFFiles::testGTFTooManyFields PASSED tests/tabix_test.py::TestBed::testRead PASSED tests/tabix_test.py::TestBed::testWrite PASSED tests/tabix_test.py::TestUnicode::testFromTabix PASSED tests/tabix_test.py::TestUnicode::testFromVCF PASSED tests/tabix_test.py::TestVCFFromTabix::testRead PASSED tests/tabix_test.py::TestVCFFromTabix::testWrite PASSED tests/tabix_test.py::TestVCFFromVCF::testConnecting PASSED tests/tabix_test.py::TestVCFFromVCF::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_11::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_11::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_11::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_11::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_13::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_13::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_13::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_13::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_6::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_6::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_6::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_6::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_issue85::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_issue85::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_10::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_10::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_10::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_10::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_22::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_22::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_22::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_22::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_18::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_18::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_18::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_18::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_16::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_16::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_16::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_16::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_5::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_5::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_5::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_5::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_23::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_23::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_23::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_23::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_24::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_24::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_24::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_24::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_2::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_2::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_2::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_2::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_9::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_9::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_9::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_9::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_21::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_21::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_21::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_21::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_3::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_3::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_3::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_3::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_4::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_4::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_4::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_4::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_8::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_8::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_8::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_8::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_7::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_7::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_7::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_7::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_15::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_15::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_15::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_15::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_vcf_v42::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_vcf_v42::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_20::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_20::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_20::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_20::testParsing PASSED tests/tabix_test.py::VCFFromTabixTest_12::testRead PASSED tests/tabix_test.py::VCFFromTabixTest_12::testWrite PASSED tests/tabix_test.py::VCFFromVCFTest_12::testConnecting PASSED tests/tabix_test.py::VCFFromVCFTest_12::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile::testParsing [W::vcf_parse] Contig 'M' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_11::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testConnecting [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::bcf_hdr_check_sanity] GL should be declared as Number=G PASSED tests/tabix_test.py::TestVCFFromVariantFile_13::testParsing [W::bcf_hrec_check] Invalid tag name: "1000g" [W::bcf_hrec_check] Invalid tag name: "GT:GL:GQ:NR" [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'MMLQ' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17_gl000205_random' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr18' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr19' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr21' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr22' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000214' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000220' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrUn_gl000225' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chrX' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_6::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'CallSetAC' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CallSetAC2' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:669442 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testConnecting [E::bcf_hdr_parse] Could not parse the header, sample line not found PASSED tests/tabix_test.py::TestVCFFromVariantFile_issue85::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_10::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_22::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'refseq.name' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'refseq.positionType' is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_18::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_16::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_5::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_23::testParsing [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testConnecting [E::bcf_hdr_parse_sample_line] Could not parse the "#CHROM.." line, either the fields are incorrect or spaces are present instead of tabs: #CHROM POS ID REF ALT QUAL FILTER INFO PASSED tests/tabix_test.py::TestVCFFromVariantFile_24::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_2::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'sumGLbyD' is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_9::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_21::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_3::testParsing [W::vcf_parse] Contig '1' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_4::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_8::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:676148 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_7::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:249843 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_15::testParsing [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_format_dict2] FORMAT 'GT' at 20:439104 is not defined in the header, assuming Type=String PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_vcf_v42::testParsing PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testConnecting [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 PASSED tests/tabix_test.py::TestVCFFromVariantFile_20::testParsing [W::bcf_hdr_register_hrec] The definition of Flag "INFO/NotCalledInValidationSamples" is invalid, forcing Number=0 [W::vcf_parse] Contig '20' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testConnecting PASSED tests/tabix_test.py::TestVCFFromVariantFile_12::testParsing [W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse_info] INFO 'DP' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'AF1' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'CI95' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'DP4' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'MQ' is not defined in the header, assuming Type=String [W::vcf_parse_info] INFO 'PV4' is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'PL' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GT' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse_format_dict2] FORMAT 'GQ' at chr1:1281168 is not defined in the header, assuming Type=String [W::vcf_parse] Contig 'chr2a' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr2b' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr4' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr5' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_cox_hap1' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6_qbl_hap2' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr6' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr7' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr8' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr9' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr10' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr11' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr12' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr13' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr14' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr15' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr16' is not defined in the header. (Quick workaround: index the file with tabix.) [W::vcf_parse] Contig 'chr17' is not defined in the header. (Quick workaround: index the file with tabix.) PASSED tests/tabix_test.py::TestIndexArgument::testFetchAll PASSED tests/tabix_test.py::TestIndexArgument::testLoadIndexWithoutTbiExtension PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testBED0v26 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testEmpty PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v23 PASSED tests/tabix_test.py::TestBackwardsCompatibility::testVCF0v26 PASSED tests/tabix_test.py::TestMultipleIterators::testDisjointIterators PASSED tests/tabix_test.py::TestMultipleIterators::testDoubleFetch PASSED tests/tabix_test.py::TestMultipleIterators::testJoinedIterators PASSED tests/tabix_test.py::TestMultipleIterators::testScope PASSED tests/tabix_test.py::TestContextManager::testManager PASSED tests/tabix_test.py::TestMultithreadTabixFile::testMultithreadEqualsSinglethread PASSED tests/tabixproxies_test.py::TestBED::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestParser::testCopy PASSED tests/tabixproxies_test.py::TestParser::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestParser::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestParser::testRead PASSED tests/tabixproxies_test.py::TestParser::testUnset PASSED tests/tabixproxies_test.py::TestParser::testWrite PASSED tests/tabixproxies_test.py::TestGTF::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGTF::testCopy PASSED tests/tabixproxies_test.py::TestGTF::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGTF::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGTF::testRead PASSED tests/tabixproxies_test.py::TestGTF::testUnset PASSED tests/tabixproxies_test.py::TestGTF::testWrite PASSED tests/tabixproxies_test.py::TestGTF::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGTF::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGTF::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGTF::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_fields PASSED tests/tabixproxies_test.py::TestGTF::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGTF::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGTF::test_setting_strand_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::testAssignmentToTargetList PASSED tests/tabixproxies_test.py::TestGFF3::testCopy PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorCompressed PASSED tests/tabixproxies_test.py::TestGFF3::testIteratorUncompressed PASSED tests/tabixproxies_test.py::TestGFF3::testRead PASSED tests/tabixproxies_test.py::TestGFF3::testUnset PASSED tests/tabixproxies_test.py::TestGFF3::testWrite PASSED tests/tabixproxies_test.py::TestGFF3::test_added_attribute_is_output PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_can_be_modified PASSED tests/tabixproxies_test.py::TestGFF3::test_asdict_contains_attributes PASSED tests/tabixproxies_test.py::TestGFF3::test_setAttribute_makes_changes PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_end_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_feature_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_fields PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_frame_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_score_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_source_to_none_produces_dot PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_start_is_one_based PASSED tests/tabixproxies_test.py::TestGFF3::test_setting_strand_to_none_produces_dot PASSED tests/test_samtools_python.py::test_idxstats_parse_split_lines PASSED tests/test_samtools_python.py::test_bedcov_split_lines PASSED tests/test_samtools_python.py::test_idxstats_parse PASSED tests/test_samtools_python.py::test_bedcov PASSED =============================== warnings summary =============================== .pybuild/cpython3_3.13_pysam/build/tests/samtools_test.py::SamtoolsTest::testStatements .pybuild/cpython3_3.13_pysam/build/tests/samtools_test.py::PysamTest::testStatements /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/tests/samtools_test.py:138: UserWarning: versions of pysam.samtools and samtools differ: 1.21 != 1.22.1 warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 964 passed, 12 skipped, 2 warnings in 313.95s (0:05:13) ============ make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() # pysam: Cython 3.1.6 is available - using cythonize if necessary # pysam: htslib mode is external # pysam: HTSLIB_CONFIGURE_OPTIONS=None running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'win32/*.[ch]' warning: no files found matching 'htslib/LICENSE' warning: no files found matching 'htslib/README' warning: no files found matching '*.[ch]' under directory 'htslib' warning: no previously-included files found matching 'htslib/*config*.h' warning: no files found matching 'htslib/configure.ac' warning: no files found matching 'htslib/m4/*.m4' warning: no files found matching 'htslib/*.in' warning: no files found matching 'htslib/configure' warning: no files found matching 'htslib/config.guess' warning: no files found matching 'htslib/config.sub' warning: no files found matching 'htslib/version.sh' warning: no files found matching 'htslib/Makefile' warning: no files found matching 'htslib/*.mk' warning: no previously-included files found matching 'htslib/config.mk' warning: no previously-included files found matching 'htslib/htscodecs.mk' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam copying samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools copying bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools running build_ext checking for riscv64-linux-gnu-gcc option to enable C99 features... riscv64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pysam-0.23.3+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c pysam/conftest_cstd.c -o build/temp.linux-riscv64-cpython-313/pysam/conftest_cstd.o riscv64-linux-gnu-gcc option to enable C99 features: none needed creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension running install_lib creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/config.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/csamtools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_stream.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/bcftools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcfaidx.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/Pileup.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/htslib_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/utils.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/config.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/samtools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/Pileup.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__pycache__/bcftools.cpython-313.pyc -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__pycache__ copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/samtools.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/py.typed -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/conftest_cstd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabix.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignmentfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/__init__.py -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools_config_vars.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/faidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_color.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_cat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_import.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_addrprg.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_flags.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamshuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdupse.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_index.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_plcmd.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_stat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_md.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_aux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_samples.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_quickcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_lpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cram_size.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reference.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/splaysort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/lz4/lz4.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools/lz4 copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/reset.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/phase.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_opts.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bamtk.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_utils.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam2depth.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_markdup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_split.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_ampliconclip.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_fastq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/padding.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/cut_target.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/coverage.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_sort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/consensus_pileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bedcov.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/samtools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/stats_isize.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/dict.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/tmp_file.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/sam_view.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_mate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/bam_rmdup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/samtools/amplicon_stats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/samtools creating /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/reheader.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/utlist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/config.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfplugin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/README -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hex.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcnv.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.sh -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/call.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/variantkey.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/rbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfisec.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfview.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/LICENSE -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gff.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconcat.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfstats.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/gvcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfmerge.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/regidx.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bin.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/str_finder.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/hclust.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfconvert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/csq.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfbuf.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tsv2vcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cols.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ploidy.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/tabix.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/HMM.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsom.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/version.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/smpl_ilist.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/convert.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mw.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/consensus.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfnorm.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/ccall.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kmin.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfroh.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfindex.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/em.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/cigar_state.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfquery.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/main.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bcftools.pysam.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/abuf.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcmp.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfannotate.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/read_consensus.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/filter.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mpileup.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/prob1.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam_sample.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/extsort.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcffilter.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfhead.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/vcfgtcheck.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/kheap.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/dist.c.pysam.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/khash_str2str.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/bam2bcf_iaux.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/edlib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/include/bcftools/mcall.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/bcftools copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/version.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/pysam_util.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libctabixproxies.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.cpython-313-riscv64-linux-gnu.so -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcutils.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamfile.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcf.pyx -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbgzf.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcbcftools.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcsamtools.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcvcf.pxd -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/cbcftools_util.h -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libchtslib.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.c -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam copying /build/reproducible-path/python-pysam-0.23.3+ds/.pybuild/cpython3_3.13_pysam/build/pysam/libcalignedsegment.pyi -> /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/config.py to config.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/bcftools.py to bcftools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/Pileup.py to Pileup.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/samtools.py to samtools.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam/include/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying pysam.egg-info to /build/reproducible-path/python-pysam-0.23.3+ds/debian/python3-pysam/usr/lib/python3.13/dist-packages/pysam-0.23.3.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds' cd tests/pysam_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' rm -fr *.bai *.csi *.fai *.gzi *.pileup* [A-Za-z]*.cram *.crai \ all.lock all.stamp *~ calDepth *.dSYM pysam_*.sam \ ex2.sam ex2.sam.gz ex1.sam ex1.fa.gz \ with_md.sam.gz \ *.fq.gz make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/pysam_data' cd tests/cbcf_data && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' rm -rf all.lock all.stamp *.gz *.tbi *.csi *.bcf make[2]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds/tests/cbcf_data' find . -name "*.pyc" -delete find . -name "*.pyxbldc" -delete find . -name "tmp_*.bam" -delete find . -name "*.bai*" -delete find . -name "*.cram*" -delete find . -name "pysam_uncompressed.bam" -delete rm -rf tests/pysam_test_work \ tests/example_htslib.gtf.gz.tbi \ tests/log.txt \ tests/test.bam \ tests/_compile_test.c \ tests/pysam_ex2.sam \ tests/__pycache__ \ pysam/calignmentfile.c \ pysam/cbcf.c \ tests/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai \ tests/pysam_data/ex1.fa.gz \ tests/pysam_data/ex1.fa.gz.gzi \ tests/pysam_data/ex1_csi.bam.csi rm -rf .pytest_cache/ dh_install -Xtest.gtf.gz find debian -name log.txt -delete find debian -name LICENSE -delete make[1]: Leaving directory '/build/reproducible-path/python-pysam-0.23.3+ds' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcalignedsegment.cpython-313-riscv64-linux-gnu.so: DWARF compression not beneficial - old size 1362966 new size 1366844 dwz: debian/python3-pysam/usr/lib/python3/dist-packages/pysam/libcbcf.cpython-313-riscv64-linux-gnu.so: DWARF compression not beneficial - old size 2207653 new size 2249463 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-pysam' in '../python3-pysam_0.23.3+ds-2_riscv64.deb'. dpkg-deb: building package 'python3-pysam-dbgsym' in '../python3-pysam-dbgsym_0.23.3+ds-2_riscv64.deb'. dpkg-genbuildinfo --build=any -O../python-pysam_0.23.3+ds-2_riscv64.buildinfo dpkg-genchanges --build=any -O../python-pysam_0.23.3+ds-2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-11-15T11:02:22Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 15 Nov 2025 11:02:26 +0000 | +------------------------------------------------------------------------------+ python-pysam_0.23.3+ds-2_riscv64.changes: ----------------------------------------- Format: 1.8 Date: Fri, 14 Nov 2025 14:10:45 +0100 Source: python-pysam Binary: python3-pysam python3-pysam-dbgsym Architecture: riscv64 Version: 0.23.3+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Changes: python-pysam (0.23.3+ds-2) unstable; urgency=medium . * skip-test-on-32-bit.patch: skip further tests. 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riscv64 Build-Date: Sat, 15 Nov 2025 11:02:18 +0000 Build-Path: /build/reproducible-path/python-pysam-0.23.3+ds Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-2), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), bcftools (= 1.22-1), binutils (= 2.45-8), binutils-common (= 2.45-8), binutils-riscv64-linux-gnu (= 2.45-8), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), comerr-dev (= 2.1-1.47.2-3+b3), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-7), cpp-15-riscv64-linux-gnu (= 15.2.0-7), cpp-riscv64-linux-gnu (= 4:15.2.0-4), cython3 (= 3.1.6+dfsg-2), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-python (= 6.20250414), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-7), g++-15-riscv64-linux-gnu (= 15.2.0-7), g++-riscv64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-7), gcc-15-base (= 15.2.0-7), gcc-15-riscv64-linux-gnu (= 15.2.0-7), gcc-riscv64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-7), libatomic1 (= 15.2.0-7), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-8), libblkid1 (= 2.41.2-4), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-7), libcom-err2 (= 1.47.2-3+b3), libcrypt-dev (= 1:4.5.1-1), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45-8), libctf0 (= 2.45-8), libcurl3t64-gnutls (= 8.17.0-2), libcurl4-gnutls-dev (= 8.17.0-2), libdb5.3t64 (= 5.3.28+dfsg2-10), libdebconfclient0 (= 0.281), libdebhelper-perl (= 13.28), libdeflate-dev (= 1.23-2), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.194-1), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.3-1), libexpat1-dev (= 2.7.3-1), libffi8 (= 3.5.2-2), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-15-dev (= 15.2.0-7), libgcc-s1 (= 15.2.0-7), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgmp-dev (= 2:6.3.0+dfsg-5), libgmp10 (= 2:6.3.0+dfsg-5), libgmpxx4ldbl (= 2:6.3.0+dfsg-5), libgnutls-dane0t64 (= 3.8.10-3), libgnutls-openssl27t64 (= 3.8.10-3), libgnutls28-dev (= 3.8.10-3), libgnutls30t64 (= 3.8.10-3), libgomp1 (= 15.2.0-7), libgprofng0 (= 2.45-8), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libhogweed6t64 (= 3.10.2-1), libhts-dev (= 1.22.1+ds2-1), libhts3t64 (= 1.22.1+ds2-1), libhtscodecs2 (= 1.6.1-2), libidn2-0 (= 2.3.8-4), libidn2-dev (= 2.3.8-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-7), libjansson4 (= 2.14-2+b3), libjs-sphinxdoc (= 8.2.3-8), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), libldap-dev (= 2.6.10+dfsg-1), libldap2 (= 2.6.10+dfsg-1), liblsan0 (= 15.2.0-7), liblzma-dev (= 5.8.1-2), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncurses6 (= 6.5+20250216-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp2-dev (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libnghttp3-dev (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-gnutls-dev (= 1.16.0-1), libngtcp2-crypto-gnutls8 (= 1.16.0-1), libngtcp2-dev (= 1.16.0-1), libp11-kit-dev (= 0.25.9-2), libp11-kit0 (= 0.25.9-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libpython3-all-dev (= 3.13.7-1), libpython3-dev (= 3.13.7-1), libpython3-stdlib (= 3.13.7-1), libpython3.13 (= 3.13.9-1), libpython3.13-dev (= 3.13.9-1), libpython3.13-minimal (= 3.13.9-1), libpython3.13-stdlib (= 3.13.9-1), libreadline8t64 (= 8.3-3), librtmp-dev (= 2.4+20151223.gitfa8646d.1-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libselinux1 (= 3.9-2), libsframe2 (= 2.45-8), libsmartcols1 (= 2.41.2-4), libsqlite3-0 (= 3.46.1-8), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.4-1), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-7), libstdc++6 (= 15.2.0-7), libsystemd0 (= 258.1-2), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-7), libtsan2 (= 15.2.0-7), libubsan1 (= 15.2.0-7), libuchardet0 (= 0.0.8-2), libudev1 (= 258.1-2), libunbound8 (= 1.24.1-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libxml2-16 (= 2.15.1+dfsg-0.3), libzstd-dev (= 1.5.7+dfsg-2), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.17.7-2), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 14.0.0), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), nettle-dev (= 3.10.2-1), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), python3 (= 3.13.7-1), python3-all (= 3.13.7-1), python3-all-dev (= 3.13.7-1), python3-autocommand (= 2.2.2-3), python3-dev (= 3.13.7-1), python3-inflect (= 7.5.0-1), python3-iniconfig (= 2.1.0-1), python3-jaraco.context (= 6.0.1-1), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-minimal (= 3.13.7-1), python3-more-itertools (= 10.8.0-1), python3-packaging (= 25.0-1), python3-pkg-resources (= 78.1.1-0.1), python3-pluggy (= 1.6.0-1), python3-pygments (= 2.18.0+dfsg-2), python3-pytest (= 8.4.2-1), python3-setuptools (= 78.1.1-0.1), python3-typeguard (= 4.4.4-1), python3-typing-extensions (= 4.15.0-1), python3-zipp (= 3.23.0-1), python3.13 (= 3.13.9-1), python3.13-dev (= 3.13.9-1), python3.13-minimal (= 3.13.9-1), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1+b2), samtools (= 1.22.1-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-5), tabix (= 1.22.1+ds2-1), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-5), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1763125845" +------------------------------------------------------------------------------+ | Package contents Sat, 15 Nov 2025 11:02:31 +0000 | +------------------------------------------------------------------------------+ python3-pysam-dbgsym_0.23.3+ds-2_riscv64.deb -------------------------------------------- new Debian package, version 2.0. size 11376764 bytes: control archive=1196 bytes. 897 bytes, 12 lines control 1469 bytes, 14 lines md5sums Package: python3-pysam-dbgsym Source: python-pysam Version: 0.23.3+ds-2 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 11896 Depends: python3-pysam (= 0.23.3+ds-2) Section: debug Priority: optional Description: debug symbols for python3-pysam Build-Ids: 09c18289108045f5289238b08322cc7989f31cd0 0daab033838a59e97eb8ffba0c62ceda1f6e6203 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./usr/lib/debug/.build-id/c7/e56df56b90f0a78f48d71a5f5a9cffc6ad8fce.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.build-id/ce/ -rw-r--r-- root/root 1625432 2025-11-14 13:10 ./usr/lib/debug/.build-id/ce/ad62082fed35f44dcebc45c8e866a289a870a5.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/debug/.dwz/riscv64-linux-gnu/ -rw-r--r-- root/root 41552 2025-11-14 13:10 ./usr/lib/debug/.dwz/riscv64-linux-gnu/python3-pysam.debug drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-11-14 13:10 ./usr/share/doc/python3-pysam-dbgsym -> python3-pysam python3-pysam_0.23.3+ds-2_riscv64.deb ------------------------------------- new Debian package, version 2.0. size 3621248 bytes: control archive=9288 bytes. 701 bytes, 16 lines control 35380 bytes, 361 lines md5sums 277 bytes, 12 lines * postinst #!/bin/sh 390 bytes, 12 lines * prerm #!/bin/sh Package: python3-pysam Source: python-pysam Version: 0.23.3+ds-2 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 34582 Depends: libc6 (>= 2.38), libhts3t64 (>= 1.22.1), zlib1g (>= 1:1.1.4), python3 (<< 3.14), python3 (>= 3.13~), python3:any Section: python Priority: optional Homepage: https://pysam.readthedocs.org/en/latest Description: interface for the SAM/BAM sequence alignment and mapping format (Python 3) Pysam is a Python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. . This package installs the module for Python 3. drwxr-xr-x root/root 0 2025-11-14 13:10 ./ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/python3/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/ -rw-r--r-- root/root 1668 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/PKG-INFO -rw-r--r-- root/root 1 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/dependency_links.txt -rw-r--r-- root/root 1 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/not-zip-safe -rw-r--r-- root/root 6 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam-0.23.3.egg-info/top_level.txt drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/lib/python3/dist-packages/pysam/ -rw-r--r-- root/root 8955 2025-06-10 10:37 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root/root 0 2025-11-14 13:10 ./usr/share/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/doc/python3-pysam/ -rw-r--r-- root/root 2833 2025-11-14 13:10 ./usr/share/doc/python3-pysam/changelog.Debian.gz -rw-r--r-- root/root 3005 2025-11-14 13:10 ./usr/share/doc/python3-pysam/copyright drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-11-14 13:10 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 211 2025-11-14 13:10 ./usr/share/lintian/overrides/python3-pysam +------------------------------------------------------------------------------+ | Post Build Sat, 15 Nov 2025 11:02:41 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 15 Nov 2025 11:02:41 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 15 Nov 2025 11:02:52 +0000 | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 493204 Build-Time: 5279 Distribution: unstable Host Architecture: riscv64 Install-Time: 26 Job: /srv/rebuilderd/tmp/rebuilderdC1G8eV/inputs/python-pysam_0.23.3+ds-2.dsc Machine Architecture: riscv64 Package: python-pysam Package-Time: 5377 Source-Version: 0.23.3+ds-2 Space: 493204 Status: successful Version: 0.23.3+ds-2 -------------------------------------------------------------------------------- Finished at 2025-11-15T11:02:22Z Build needed 01:29:37, 493204k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdC1G8eV/out checking python3-pysam-dbgsym_0.23.3+ds-2_riscv64.deb: size differs for python3-pysam-dbgsym_0.23.3+ds-2_riscv64.deb